mRNA_E-fasciculatus_F_contig11742.1378.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig11742.1378.1 vs. uniprot
Match: D8LT62_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT62_ECTSI) HSP 1 Score: 448 bits (1153), Expect = 1.130e-149 Identity = 303/382 (79.32%), Postives = 306/382 (80.10%), Query Frame = 1
Query: 4 TLLETRRELTRQTERLQDALDSANEDRRVTQGELERVRDVFENEVAGLKEELRAVTTEIDASRRAATRAKAEAEQATALHETARAEVRLTAERADEAVAAVARATRDGATALEETRRMYEERVEASQADRDARVKSAEERAXXXXXXXXXXXXXXQAASKELARLQVSVEERLSQNEKRVLAEAQKQFDLELAELRERIDAVQKTTDSKEAQSREYLASLEDLRLRSTAELRDFGRELAAAGEELEKSRNSARNSEGKASKLQADLGVLQRVTEGLRQRLEEAERNKRQANELHSSNTSKLQAQHGSELKDMERRLSEAREACRAAEKTTKENEERVSALRQVHLQSLRLLESTVGQALGDAVASARQIGSGTGDLAFAGGE 1149
TLLETRRELTRQTERL AVTTEIDASRRAATRAKAEAEQATALHETARAEVRLTAERADEAVAAVARATRDGATALEETRRMYEERVEASQADRDARVKSAEERAXXXXXXXXXXX QAASKELARLQVSVEER+SQNEKRV+ EAQKQFDLELAELRERIDAVQK T+SKEAQSREYLASLEDLRLRSTAELRDFGRELAAAGEELEKSRNSARNSEGKASKLQADLGV QRVTEG GSELKDMERRLSEAR ACRAAEKT KENEERVSALRQVHL SLRLLESTVGQALGDAVASARQIGSGTGDLAFAGGE
Sbjct: 306 TLLETRRELTRQTERLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVTTEIDASRRAATRAKAEAEQATALHETARAEVRLTAERADEAVAAVARATRDGATALEETRRMYEERVEASQADRDARVKSAEERAXXXXXXXXXXXAVRQAASKELARLQVSVEERISQNEKRVVVEAQKQFDLELAELRERIDAVQKITESKEAQSREYLASLEDLRLRSTAELRDFGRELAAAGEELEKSRNSARNSEGKASKLQADLGVQQRVTEGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGSELKDMERRLSEARAACRAAEKTAKENEERVSALRQVHLHSLRLLESTVGQALGDAVASARQIGSGTGDLAFAGGE 687
BLAST of mRNA_E-fasciculatus_F_contig11742.1378.1 vs. uniprot
Match: A0A6H5KCD5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCD5_9PHAE) HSP 1 Score: 421 bits (1083), Expect = 3.010e-144 Identity = 280/343 (81.63%), Postives = 286/343 (83.38%), Query Frame = 1
Query: 121 VFENEVAGLKEELRAVTTEIDASRRAATRAKAEAEQATALHETARAEVRLTAERADEAVAAVARATRDGATALEETRRMYEERVEASQADRDARVKSAEERAXXXXXXXXXXXXXXQAASKELARLQVSVEERLSQNEKRVLAEAQKQFDLELAELRERIDAVQKTTDSKEAQSREYLASLEDLRLRSTAELRDFGRELAAAGEELEKSRNSARNSEGKASKLQADLGVLQRVTEGLRQRLEEAERNKRQANELHSSNTSKLQAQHGSELKDMERRLSEAREACRAAEKTTKENEERVSALRQVHLQSLRLLESTVGQALGDAVASARQIGSGTGDLAFAGGE 1149
+FENEVAGLKEELRAV T ALHETARAEVRLTAERADEAVAAV RATRDGATALEETRRMYEERVEASQADRDARVKSAEERAXXXXXXXXXXXXXXQAASKELARLQVSVEERL+QNEKRV+AEAQKQFDLEL ELRERIDAVQ+ T+SKEAQSREYLASLE+LRLRSTAELRDFGRELAAAGEELEKSRNSARNSEGKASKLQADLGV QRV EGL QHGSELKDMERRLSEAR ACRAAEK KENEERVSALRQVHL SLRLLESTVGQALGDAVASARQIGSGTGDLAFAGGE
Sbjct: 1 MFENEVAGLKEELRAVIT--------------------ALHETARAEVRLTAERADEAVAAVTRATRDGATALEETRRMYEERVEASQADRDARVKSAEERAXXXXXXXXXXXXXXQAASKELARLQVSVEERLAQNEKRVVAEAQKQFDLELVELRERIDAVQRITESKEAQSREYLASLEELRLRSTAELRDFGRELAAAGEELEKSRNSARNSEGKASKLQADLGVQQRVAEGLXXXXXXXXXXXXXXXXXXXXXXXXXXXQHGSELKDMERRLSEARAACRAAEKNAKENEERVSALRQVHLHSLRLLESTVGQALGDAVASARQIGSGTGDLAFAGGE 323
BLAST of mRNA_E-fasciculatus_F_contig11742.1378.1 vs. uniprot
Match: A0A836CKE5_9STRA (Leucine rich repeat protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKE5_9STRA) HSP 1 Score: 170 bits (431), Expect = 1.590e-43 Identity = 150/364 (41.21%), Postives = 215/364 (59.07%), Query Frame = 1
Query: 13 ETRRELTRQTERLQDALDSANEDRRVTQGELERVRDVFENEVAGLKEELRAVTTEIDASRRAATRAKAEAEQATALHETARAEVRLTAERADEAVAAVARATRDGATALEETRRMYEERVEASQADRDARVKSAEERAXXXXXXXXXXXXXXQAASKELARLQVSVEERLSQNEKRVLAEAQKQFDLELAELRERIDAVQKTTDSKEAQSREYLASLEDLRLRSTAELRDFGRELAAAGEELEKSRNSARNSEGKASKLQADLGVLQRVTEGLRQRLEEAERNKRQANELHSSNTSKLQAQHGSELKDMERRLSEAREACRAAEKTTKENEERVSALRQVHLQSLRLLESTVGQALGDAVASAR 1104
ET+R L RQ ERLQ A+D ANEDRR Q + E R + E+A EE R + TE+D + R R + +Q A +TA AEVRL ER DE A ARA +G A+EET XXXXXXXXXXXXXX +ELARLQV +EE++++ E+ V E + ++D E+ EL ERI++VQK + +E + + A L+ R +S AELR+ +EL ++L+ +R +R +EGKA+KL D+GVLQR E L+ + + ER+++ E H +T KLQAQH SE++ +ER+L EAR A A E + E ++A R H ++L +L+ ++ Q+L +A +AR
Sbjct: 298 ETKRGLERQVERLQAAVDGANEDRRSEQRQSELARSSLDKELAETVEEARRLQTELDRALRNGKRLQTLTDQLQASLDTAHAEVRLLHERVDEHAALAARAASEGRAAVEETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRELARLQVLLEEKVAEAERSVRDEQRNRYDAEVKELVERIESVQKMRELQEGELKGLTAQLDAQRSQSAAELRELNKELLRYRDQLDAAREGSRAAEGKAAKLSTDVGVLQRKAEVLQSKCDSLERDRQHTAEAHQGSTDKLQAQHASEVRALERQLQEARAAISALEGKLTDCAEEMAAARAQHTRTLGVLDKSIAQSLAEAFEAAR 661 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11742.1378.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig11742.1378.1 >prot_E-fasciculatus_F_contig11742.1378.1 ID=prot_E-fasciculatus_F_contig11742.1378.1|Name=mRNA_E-fasciculatus_F_contig11742.1378.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=266bp MYEERVEASQADRDARVKSAEERARAAEHERQRAEAARQAASKELARLQVback to top mRNA from alignment at E-fasciculatus_F_contig11742:401..4231+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig11742.1378.1 ID=mRNA_E-fasciculatus_F_contig11742.1378.1|Name=mRNA_E-fasciculatus_F_contig11742.1378.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3831bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11742:401..4231+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11742:401..4231+ >mRNA_E-fasciculatus_F_contig11742.1378.1 ID=mRNA_E-fasciculatus_F_contig11742.1378.1|Name=mRNA_E-fasciculatus_F_contig11742.1378.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1596bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11742:401..4231+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |