mRNA_E-fasciculatus_F_contig1174.1376.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1174.1376.1
Unique NamemRNA_E-fasciculatus_F_contig1174.1376.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1174.1376.1 vs. uniprot
Match: D7FXD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXD8_ECTSI)

HSP 1 Score: 348 bits (893), Expect = 9.560e-112
Identity = 177/192 (92.19%), Postives = 185/192 (96.35%), Query Frame = 1 
Query:  352 MVKFSEDSPFLQDQGDGQPNALCSQHVRSLELLKAIVQVDTVLAGFLVLSVVGKDHEQITKDEEKVQMVLQVVTASVFLAAIAHTVVLMVCTGWRYTLAWYDPLFPAGFSAVGMFLLYLTIADAILIRLRPQEDLHTVGYWMIIIFGLMCPMALAGPTATLQMILHKFENEDEARSDVLCTSSRLSATRPIA 927
            MVKFSEDSPFLQD GDGQP+A+CSQH+RSL+LLKAIVQVDT+LAGFLVLSVVGK+HEQITKDEEKVQMVLQVVTASVFLAAIAHTVVLMVCTGWRYTLAWYDPLFPAGFSAVGMFLLYLTIADAILIRLRPQEDLHTVGYWMIIIFGLMCPMALAGPTATLQMILHKFE ++EA  D L  SSRLSATRPIA
Sbjct:    1 MVKFSEDSPFLQDDGDGQPSAICSQHIRSLDLLKAIVQVDTILAGFLVLSVVGKNHEQITKDEEKVQMVLQVVTASVFLAAIAHTVVLMVCTGWRYTLAWYDPLFPAGFSAVGMFLLYLTIADAILIRLRPQEDLHTVGYWMIIIFGLMCPMALAGPTATLQMILHKFERDNEAGLDAL-GSSRLSATRPIA 191
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1174.1376.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FXD8_ECTSI9.560e-11292.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1174contigE-fasciculatus_F_contig1174:7197..12052 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-18_000040.1
Exons4
Model size2538
Cds size579
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1174.1376.1prot_E-fasciculatus_F_contig1174.1376.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1174 8805..10431 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927685.254816-UTR-E-fasciculatus_F_contig1174:7196..88041622927685.254816-UTR-E-fasciculatus_F_contig1174:7196..8804Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1174 7197..8804 -
1695995649.4922283-UTR-E-fasciculatus_F_contig1174:7196..88041695995649.4922283-UTR-E-fasciculatus_F_contig1174:7196..8804Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1174 7197..8804 -
1622927685.3153358-UTR-E-fasciculatus_F_contig1174:10431..105861622927685.3153358-UTR-E-fasciculatus_F_contig1174:10431..10586Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1174 10432..10586 -
1695995649.5382957-UTR-E-fasciculatus_F_contig1174:10431..105861695995649.5382957-UTR-E-fasciculatus_F_contig1174:10431..10586Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1174 10432..10586 -
1622927685.329947-UTR-E-fasciculatus_F_contig1174:11856..120521622927685.329947-UTR-E-fasciculatus_F_contig1174:11856..12052Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1174 11857..12052 -
1695995649.5519145-UTR-E-fasciculatus_F_contig1174:11856..120521695995649.5519145-UTR-E-fasciculatus_F_contig1174:11856..12052Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1174 11857..12052 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927685.270972-CDS-E-fasciculatus_F_contig1174:8804..91821622927685.270972-CDS-E-fasciculatus_F_contig1174:8804..9182Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1174 8805..9182 -
1695995649.5028799-CDS-E-fasciculatus_F_contig1174:8804..91821695995649.5028799-CDS-E-fasciculatus_F_contig1174:8804..9182Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1174 8805..9182 -
1622927685.2861276-CDS-E-fasciculatus_F_contig1174:9563..96501622927685.2861276-CDS-E-fasciculatus_F_contig1174:9563..9650Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1174 9564..9650 -
1695995649.5140498-CDS-E-fasciculatus_F_contig1174:9563..96501695995649.5140498-CDS-E-fasciculatus_F_contig1174:9563..9650Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1174 9564..9650 -
1622927685.2999468-CDS-E-fasciculatus_F_contig1174:10317..104311622927685.2999468-CDS-E-fasciculatus_F_contig1174:10317..10431Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1174 10318..10431 -
1695995649.5246968-CDS-E-fasciculatus_F_contig1174:10317..104311695995649.5246968-CDS-E-fasciculatus_F_contig1174:10317..10431Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1174 10318..10431 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1174.1376.1

>prot_E-fasciculatus_F_contig1174.1376.1 ID=prot_E-fasciculatus_F_contig1174.1376.1|Name=mRNA_E-fasciculatus_F_contig1174.1376.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=193bp
MVKFSEDSPFLQDQGDGQPNALCSQHVRSLELLKAIVQVDTVLAGFLVLS
VVGKDHEQITKDEEKVQMVLQVVTASVFLAAIAHTVVLMVCTGWRYTLAW
YDPLFPAGFSAVGMFLLYLTIADAILIRLRPQEDLHTVGYWMIIIFGLMC
PMALAGPTATLQMILHKFENEDEARSDVLCTSSRLSATRPIA*
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mRNA from alignment at E-fasciculatus_F_contig1174:7197..12052-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1174.1376.1 ID=mRNA_E-fasciculatus_F_contig1174.1376.1|Name=mRNA_E-fasciculatus_F_contig1174.1376.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4856bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1174:7197..12052- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAACAAAGGGCTACATATATACGTACCAGCAGCGTCATCAGCAGCAGGAG
GAGACCTTGCCCTATTTTTCATTTTCACCTCTCCGCCCTGGCGAGAACCC
AAGGCATTGCATCAGAACACGACTCCCCCTGCCTCGCTGGAGCATCCACT
GCAGGCCACGCCTCATGTGCTGCGTGGAAATCGACTACAATCAGAGGTGA
GCAGCAAGGAACGGCGGTACAGCCGCGGGGGGCTGTGTATATGCAGGCAG
CAAAATCTTCAACGTGGTGTGTGTGCGGAGAGACACACCTACTGGTTGCC
TTGCGGGCTGCGGCTGGTGCGTGCATGTGCCCAAAACAGAACAACCACAC
CAACGGCAACGCCAGCAACGCCGAGCAACGGCTGTACGCATTTCTCCCCT
CTCTGGCGGCGTGGATGTCTTGCTGCAGCAGGGGAATCTATTGGCTGGCT
TCGGCCCACGTGGTCCAAAGCGCTACAAGTATCAAACGCCGAGTTGCCCT
CACACCGTCCCTGGGATCGGAACGCTTGCTTGAAGCAGAGACTTTTGAGT
TGTGCCGAGAGGCAGCAGTGTCTTCCCCTCGCGGCCCAGGGCCCAGGATG
GTATCGAATACCACGCTGCACTGACGCACACCGCAGAAGCAACAGCAGAA
GCAAAGCAACAGCAAAGCAACAGCGAGAGAGAGCAGCACCCGCGACAACA
CAACACAGAAACAAACCATGCGCGGGCTGGTGTGCGCATGCAGTTTTCGA
TCGAATGCTGCTGTATCTCTCCGGCGAAAGTTCCCACGGCTCTGAACCGT
CTAGGCTCGGAATACTACTGTATGTATACTGCTGTTAACAGCAGGTGGCT
GCAGGTGGGCCTGTTGTCGTTTAGAGCTGGTAACCAAGAAGTTCGACTTG
AACGAGCTCGGGCGCAGCTTTTTAGTGAAGGACTCTACGTTGTGCGCATG
TTAGAAAAGCGAAACTAGGGGGGCAAAAGTTGTGCCTCGAGGTGCCACTG
AGACAGCGCAGTAGGGCAGGACGCCAGACGTAACAACAGCAGTTGGACGT
GCGTGGATATTCAGTCGTTATTCTGACAGGTGGTTGTGCGAGACGGAGTA
ACCACACAGCACCCTGGCGGGTGATGGATGGCGCAGGAGGTGGGGTCCGG
TTGGGTCGTACCTGTCGAAGACATCAAATCCTCATGAGGCTTATTCAGAT
TTGAGTTTCTTTATCGGATGCACTGGCTGTGCTGTCCCAAGTTCATCATG
TGTCGCCGACACAAATATTTCCCGGAACATTGGGCAGTCTTCCACTGGAA
GGTTTCTGTTCCTCCAGCGCCTCCGCCTAACTCACGCACGGCCCTGGCCT
GCTTCTGAATTTCAGTTGTATAGCAGGGTACCCATGCATACTACTTTTCT
CACGAGCAGCGGATCTTTTCCTCGTTCTTGTTTCCCGTTTTTGCTTCTTC
GGCCGGTTTCTCGAAGGGGATTCGTTTCTTTCCCTTGAAGAGTGCGGAGG
AGGAGAAGGAGGAGGAGGAGGAGGTACGGGCTCCGTGGCCTAGTGCAAGT
CCCTCGCAGGCGACTGACGGCAAGGGATCTTCGTTTTTTGCGGACACGAC
CTACCTAGAAATATCTAGCCCATGGTGAAGTTTTCGGAGGACAGTCCTTT
CCTGCAGGACCAAGGAGATGGGCAGCCGAACGCCCTCTGCTCGCAGCACG
TCAGGAGCTTGGAGCTGCTCAAGGCGATCGTTCAGGTTAACGTGTTTTCT
TGTTTTTTATAGGCCGTTTTCTGCATGGTACTGGTCCCCGTTCTCGCATG
TCCGCTCAAGCCGAATTGTGCGAGTCCTGCGTTGCAGACTGCTGCTTTGT
TCGGAGTGAGCAGTACACTTGTTCTGTGCGTGTAGTGGTAAGAGTGCTAA
GCCGTAGCTTCGTGACGCCAAGAATCTTAAGCAGGGTTCGGTACATCCAG
AAACCAACAAAGCCTTCTGTTGTGCGCGAGAGAGGTGAACTAGGGCTTCA
AACAATCGGGCGTCGCCGCGCCGTAGAGATGTAGGGCCAGCTATTCAACA
CCCAAAGACAAAGGAAGCAATCCCGCGCTACTCGGACCAGTAGGGGAGGG
AATCTGTGACGGTTACCAATACCTTTTGAACTGCCCAAAGGGTGGGTCGT
GTTCATTTTCTCACTTTCGCACGAGTGGTGGCCGACGTTTTGGCCAATAG
AGCAAAGCCTGCGCTGGCAGCGCCAAGCCTCCGCGGACAGGGGTTGCTTT
TTGCGGACATGGGAAACATGTTGTGTTGTGCGTGGGTGTGCTCGGACTCC
ACCGCTGCATCACAGGGGCCTTTATTATCAACGCTTGCGGTGTGAACACC
CGGGCTGCTCGCTTCTCTCCGTGGCACTGCTGTGCGGCGTTCTCACCCCC
AGGTTGACACCGTTCTCGCTGGATTTCTTGTGCTGTCCGTGGTGGGCAAG
GACCATGAGCAGATCACGAAAGACGAGGAGAAGGTTCAGGTCAGAACGCA
AGAGTTGTTTTGCTCCATTCGTGCTTTGCTACCGAGGAACCGTCCCATTT
CTGCTGTTTAGGCCCATGTACAAGAGTCGGCGGTGGTTTTCTTGTTGACA
CCGCGGAAGCGAACAACTGGGTCTGCGCAACCGTTTGTCGCTGTGCCCAG
TGCTAAACACGGAACACGGTAGGCCAGCGGTTCACGACCGTTTCAACAGC
ATCCGGCTCTGAGCGTCATGTGTAGGTAGTCCCGGGTGCCCAATGTCGAA
GACGCAACTCTTCGTCGTCACCTTCCGTCTCTTCATAGAGAAGAAATGCC
AACGCCATCAATTGACGAGCCATACACCAAGGAAAGAGTGCCCCACCTGT
GCAACTCCCGGATCCCCCAGATGGTACTGCAGGTTGTGACCGCATCGGTG
TTTCTGGCGGCGATCGCGCACACCGTGGTGCTGATGGTGTGCACAGGTTG
GAGGTATACCCTGGCCTGGTACGATCCCCTGTTCCCGGCGGGTTTCTCAG
CCGTAGGCATGTTCCTGCTGTACTTAACGATCGCCGACGCGATCCTGATC
CGGCTGCGACCCCAGGAAGACCTGCACACGGTAGGGTACTGGATGATCAT
CATCTTTGGCCTGATGTGCCCGATGGCCTTGGCGGGTCCTACTGCTACGC
TGCAGATGATTCTACACAAGTTCGAGAATGAAGATGAGGCGCGCTCTGAC
GTGTTGTGTACAAGCTCGAGGCTGTCGGCGACCCGCCCCATTGCGTAGCG
CGACAGATCACAGACGCCTCACGTGGGTGGTTGTTTGATTTGGTCAGGGC
GTCAAGCCATGCGCATCATCTTCTTGGTGGCATCTTTTAGCGTTGGGGCG
CAGGCGCAGTGTGTCGCCCGGCACCCGTAGACACCACAGGATGGGGGGGG
TGATGTTACGAGGCCAGCGTCGCGACCGTGTCGAGCATCAAATGGCAGCC
GACGCCTGCCTCCGTCTCTCTGGAAAGGAACCTTCCTGGCGCGACCTCTG
TGCCTGCTTGTCATCGGTCTGCATCTTTGTCGCTGTCCTGCTGCCGACTT
GGTTCTGGGTTCGTTTCTCGGAGTACAAAATAACTCAATGATTGTCAGCC
TTTTTCTTGTCCTGCGACCACATCGATTGTGGGCGATGCACAACCGCGTG
CAATTGCCAAGCGTGCTTTGTTTGTGTATTTATCACTGTCCATTAACTTG
TGACTGGGAGGGTATCAATCTCGAGTTTGATGCTGGAGTATTCGTTTGGT
CTGCCCAACGCGCACGCAACGCGCCGAAAACGTAGCCCTCTGGGTCGTTG
CGCTAGGGGTTCACTCCAAGTCATCTGCATGTCATGCCTTATAGTCTATT
TTTGCACACGGCCATCATGGCCTATATTGCTATGGTTTATTTACGTTCAA
CTTACAACTTATCGGGATGTTGGGTGAAATGTAGATGGCGGGATACGCTC
CGTAGGACGTCAGGGACGCCGCAAAAGAGCAGCCAGTTTGCGCGGTGGGT
CAATGTTGTTTTGTTCGTGCATGGACCGTAGTTGGGAGTGATACCGCTGT
TGCGATTTGCGCTTGCACCCCTTTATTTATATTATTGTAGGTTATTTCTT
GTTGCTGTTCAAATGTGAAAGAAAGTCCGTTCTTGGTGTCAAATCGATTA
CCGTCTCGTGTGGCTTCATTTGGGTGGATCTTGTTGTACAAAAAACAAGA
AGCGAGTGCGATGGTTTTGCCAGACGCAAGACGTCACGAAGCCGGTCGTC
TCATGGTGTCATCCTTTTGAGACATGGGTGCTTTTTCCTTAGGAAATCCG
TTTTTCGAAGATTTTGCGGTGTTGGTGTATAGCATCAAACAACGCGACCC
ACCGAACACTCGTGTTGGGCATATGTAGCAGGGTCATCCTCCTGCCCACC
GGCGAAGGCCCGCAAGTGCGGCCAGGGATTACGAATCGATTGGGCCGTTT
GTAGTAAACTACGAAGATACCAGCGTGGTTTCGAAGCGATCCTCTCCCGC
TCGTGGGGGACTCAGTATCGCACGTTCGTATTAAGAGAGCGGACTTTTCC
AGACGCAGGGTGTCTTGTTCCCTGGATGTAGGTCAGGTAGCATTGTCATT
GTACAGTAGTCTCTCCTTTGTTGGCTGGATCCCGGAGTGTACAGGGGTGC
AATAGGGCCCAATAGGGAGGGAGGGGCGGAGAAGATGCTGACGATCATGT
AACCCGCCGCCATCTGTCAATCTACGTTGTTAGGTATAGGGAGTAATCTC
TTTTGCCTAGCACAGCACGGGCACCGATATGCATTTGCCCCAATGCTCAC
GTTGTACGCAACACAGAGGCAAACGAGTGTCGCACTTCAACAACCTACCA
GAAGAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1174:7197..12052-

>mRNA_E-fasciculatus_F_contig1174.1376.1 ID=mRNA_E-fasciculatus_F_contig1174.1376.1|Name=mRNA_E-fasciculatus_F_contig1174.1376.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1158bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1174:7197..12052- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGAAGTTTTCGGAGGACAGTCCTTTCCTGCAGGACCAAGGAGATGG
GCAGCCGAACGCCCTCTGCTCGCAGCACGTCAGGAGCTTGGAGCTGCTCA
AGGCGATCGTTCAGATGGTGAAGTTTTCGGAGGACAGTCCTTTCCTGCAG
GACCAAGGAGATGGGCAGCCGAACGCCCTCTGCTCGCAGCACGTCAGGAG
CTTGGAGCTGCTCAAGGCGATCGTTCAGGTTGACACCGTTCTCGCTGGAT
TTCTTGTGCTGTCCGTGGTGGGCAAGGACCATGAGCAGATCACGAAAGAC
GAGGAGAAGGTTCAGGTTGACACCGTTCTCGCTGGATTTCTTGTGCTGTC
CGTGGTGGGCAAGGACCATGAGCAGATCACGAAAGACGAGGAGAAGGTTC
AGATGGTACTGCAGGTTGTGACCGCATCGGTGTTTCTGGCGGCGATCGCG
CACACCGTGGTGCTGATGGTGTGCACAGGTTGGAGGTATACCCTGGCCTG
GTACGATCCCCTGTTCCCGGCGGGTTTCTCAGCCGTAGGCATGTTCCTGC
TGTACTTAACGATCGCCGACGCGATCCTGATCCGGCTGCGACCCCAGGAA
GACCTGCACACGGTAGGGTACTGGATGATCATCATCTTTGGCCTGATGTG
CCCGATGGCCTTGGCGGGTCCTACTGCTACGCTGCAGATGATTCTACACA
AGTTCGAGAATGAAGATGAGGCGCGCTCTGACGTGTTGTGTACAAGCTCG
AGGCTGTCGGCGACCCGCCCCATTGCGTAGATGGTACTGCAGGTTGTGAC
CGCATCGGTGTTTCTGGCGGCGATCGCGCACACCGTGGTGCTGATGGTGT
GCACAGGTTGGAGGTATACCCTGGCCTGGTACGATCCCCTGTTCCCGGCG
GGTTTCTCAGCCGTAGGCATGTTCCTGCTGTACTTAACGATCGCCGACGC
GATCCTGATCCGGCTGCGACCCCAGGAAGACCTGCACACGGTAGGGTACT
GGATGATCATCATCTTTGGCCTGATGTGCCCGATGGCCTTGGCGGGTCCT
ACTGCTACGCTGCAGATGATTCTACACAAGTTCGAGAATGAAGATGAGGC
GCGCTCTGACGTGTTGTGTACAAGCTCGAGGCTGTCGGCGACCCGCCCCA
TTGCGTAG
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