mRNA_E-fasciculatus_F_contig11738.1373.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11738.1373.1
Unique NamemRNA_E-fasciculatus_F_contig11738.1373.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11738.1373.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11738contigE-fasciculatus_F_contig11738:123..914 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size645
Cds size234
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11738.1373.1prot_E-fasciculatus_F_contig11738.1373.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11738 492..872 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927684.7563746-UTR-E-fasciculatus_F_contig11738:122..4911622927684.7563746-UTR-E-fasciculatus_F_contig11738:122..491Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11738 123..491 +
1695995649.2904572-UTR-E-fasciculatus_F_contig11738:122..4911695995649.2904572-UTR-E-fasciculatus_F_contig11738:122..491Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11738 123..491 +
1622927684.8669083-UTR-E-fasciculatus_F_contig11738:872..9141622927684.8669083-UTR-E-fasciculatus_F_contig11738:872..914Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11738 873..914 +
1695995649.3179047-UTR-E-fasciculatus_F_contig11738:872..9141695995649.3179047-UTR-E-fasciculatus_F_contig11738:872..914Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11738 873..914 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927684.7692704-CDS-E-fasciculatus_F_contig11738:491..6811622927684.7692704-CDS-E-fasciculatus_F_contig11738:491..681Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11738 492..681 +
1695995649.3008373-CDS-E-fasciculatus_F_contig11738:491..6811695995649.3008373-CDS-E-fasciculatus_F_contig11738:491..681Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11738 492..681 +
1622927684.7808216-CDS-E-fasciculatus_F_contig11738:828..8721622927684.7808216-CDS-E-fasciculatus_F_contig11738:828..872Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11738 829..872 +
1695995649.3095777-CDS-E-fasciculatus_F_contig11738:828..8721695995649.3095777-CDS-E-fasciculatus_F_contig11738:828..872Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11738 829..872 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11738.1373.1

>prot_E-fasciculatus_F_contig11738.1373.1 ID=prot_E-fasciculatus_F_contig11738.1373.1|Name=mRNA_E-fasciculatus_F_contig11738.1373.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=78bp
MALSSLALSRRARSASASAGDQGTLTPAEHQAETRYTRARVDDVENRVDF
VEAQLASLTQRQPGKQGGFSQRGRHHR*
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mRNA from alignment at E-fasciculatus_F_contig11738:123..914+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11738.1373.1 ID=mRNA_E-fasciculatus_F_contig11738.1373.1|Name=mRNA_E-fasciculatus_F_contig11738.1373.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=792bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11738:123..914+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTTCGTAGAACCGCCTATAAAACTGCCCCCACCACAGCGAGAGAGGACCC
GTGGATGGATCGTTGGTACCCGTGCGGTCTTGGTGGCTGTGTTTGAGCTT
CTCTCGACGGCTACCTGATTTCGTTGTTCGTTCTTGGAACACACGAGCAC
CCGGTGTAGGTTGTGCGAAAGGTGACCGAACTAGAAGGGTTTCCCCAACG
GAGTCCCGTGCAACGGACCGGTCGCGATACGTCGGGTGCCATAAATTGTC
GTGCCACCCTTCGTCGTGCTCGCGCTCGGGTTGTTCGGGCTAATCGAAAC
GGCATGTCCAGATGACTGCATTTCGCTGTTCCTTTGGCGCACCAGTTGGA
ATGTTCGAGCGTCTTACGAATGGCGCTGAGTTCTCTTGCCCTCTCTCGTC
GTGCCCGTTCTGCCTCAGCCTCTGCTGGAGATCAGGGGACGCTCACCCCC
GCTGAACACCAAGCGGAAACACGATATACCCGAGCTCGTGTGGACGATGT
CGAAAACCGGGTGGACTTTGTGGAGGCACAACTTGCTTCCCTTACCCAAA
GGCAGCCAGGCAAGCACACATGCACAGCTTGGCATCTCAACACGATGTTT
GCACTGAGAGCAGTCGTACTCGCGTTTGCAGCTGCACGCCGCACACCGAC
GCAACCGCCAAGCTCGTCATGCCCGACTAACTGTCTTCGGTATCGACCGT
TCGCAGGGAAACAAGGGGGCTTTTCACAGCGCGGACGCCACCATCGCTGA
CGTGATTCGACAACTACGGAAGCTTGGCATGGCGAAGAGTGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11738:123..914+

>mRNA_E-fasciculatus_F_contig11738.1373.1 ID=mRNA_E-fasciculatus_F_contig11738.1373.1|Name=mRNA_E-fasciculatus_F_contig11738.1373.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=468bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11738:123..914+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCGCTGAGTTCTCTTGCCCTCTCTCGTCGTGCCCGTTCTGCCTCAGC
CTCTGCTGGAGATCAGGGGACGCTCACCCCCGCTGAACACCAAGCGGAAA
CACGATATACCCGAGCTCGTGTGGACGATGTCGAAAACCGGGTGGACTTT
GTGGAGGCACAACTTGCTTCCCTTACCCAAAGGCAGCCAGATGGCGCTGA
GTTCTCTTGCCCTCTCTCGTCGTGCCCGTTCTGCCTCAGCCTCTGCTGGA
GATCAGGGGACGCTCACCCCCGCTGAACACCAAGCGGAAACACGATATAC
CCGAGCTCGTGTGGACGATGTCGAAAACCGGGTGGACTTTGTGGAGGCAC
AACTTGCTTCCCTTACCCAAAGGCAGCCAGGGAAACAAGGGGGCTTTTCA
CAGCGCGGACGCCACCATCGCTGAGGAAACAAGGGGGCTTTTCACAGCGC
GGACGCCACCATCGCTGA
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