mRNA_E-fasciculatus_F_contig11731.1370.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11731.1370.1
Unique NamemRNA_E-fasciculatus_F_contig11731.1370.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11731.1370.1 vs. uniprot
Match: D8LEV6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEV6_ECTSI)

HSP 1 Score: 177 bits (448), Expect = 1.720e-43
Identity = 115/126 (91.27%), Postives = 119/126 (94.44%), Query Frame = 1 
Query:   91 SPLSMHSASPLALGPHGSRSSPQSGPKGGEEGRGSAVAGDGDSAXXXXXXXXXXXXXXXXXXXQRAPVITDQLISLKAEFLELHDMLMESDFQWEESQRFCEVLKLQLDQLMLVPHRHRDTLASPI 468
            SPLSMHSASPLALGPHGSRSSP SG KGGEEGRGSA AGDGDS  XXXXXXXXXXXXXXXXXX R PVITD+LISLKAEFLELHDMLMESDFQWEESQRFCEVLKLQLDQLMLVPHRHR+++ASPI
Sbjct: 1122 SPLSMHSASPLALGPHGSRSSPVSGQKGGEEGRGSAAAGDGDSVAXXXXXXXXXXXXXXXXXX-RPPVITDRLISLKAEFLELHDMLMESDFQWEESQRFCEVLKLQLDQLMLVPHRHRESMASPI 1246
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11731.1370.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LEV6_ECTSI1.720e-4391.27Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11731contigE-fasciculatus_F_contig11731:1920..3584 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1665
Cds size438
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11731.1370.1prot_E-fasciculatus_F_contig11731.1370.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11731 1953..2390 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927684.5044081-UTR-E-fasciculatus_F_contig11731:1919..19521622927684.5044081-UTR-E-fasciculatus_F_contig11731:1919..1952Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11731 1920..1952 +
1695995649.1506395-UTR-E-fasciculatus_F_contig11731:1919..19521695995649.1506395-UTR-E-fasciculatus_F_contig11731:1919..1952Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11731 1920..1952 +
1622927684.5408764-UTR-E-fasciculatus_F_contig11731:2390..35841622927684.5408764-UTR-E-fasciculatus_F_contig11731:2390..3584Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11731 2391..3584 +
1695995649.1699371-UTR-E-fasciculatus_F_contig11731:2390..35841695995649.1699371-UTR-E-fasciculatus_F_contig11731:2390..3584Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11731 2391..3584 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927684.5286567-CDS-E-fasciculatus_F_contig11731:1952..23901622927684.5286567-CDS-E-fasciculatus_F_contig11731:1952..2390Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11731 1953..2390 +
1695995649.160007-CDS-E-fasciculatus_F_contig11731:1952..23901695995649.160007-CDS-E-fasciculatus_F_contig11731:1952..2390Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11731 1953..2390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11731.1370.1

>prot_E-fasciculatus_F_contig11731.1370.1 ID=prot_E-fasciculatus_F_contig11731.1370.1|Name=mRNA_E-fasciculatus_F_contig11731.1370.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=146bp
MPPGGGGGGGGGGGGGPRESPLSMHSASPLALGPHGSRSSPQSGPKGGEE
GRGSAVAGDGDSAAAAQGGESNGWGGGGGGRRQRAPVITDQLISLKAEFL
ELHDMLMESDFQWEESQRFCEVLKLQLDQLMLVPHRHRDTLASPI*
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mRNA from alignment at E-fasciculatus_F_contig11731:1920..3584+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11731.1370.1 ID=mRNA_E-fasciculatus_F_contig11731.1370.1|Name=mRNA_E-fasciculatus_F_contig11731.1370.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1665bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11731:1920..3584+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTCGCGCCCCCGCCGCCACACCGGGGGTCTCCGATGCCACCGGGGGGGGG
GGGGGGCGGCGGTGGCGGCGGCGGCGGCGGCCCGCGAGAGTCCCCCCTCT
CGATGCACTCTGCGTCGCCCCTGGCGCTCGGCCCGCACGGCTCGCGGTCT
TCGCCACAGTCTGGTCCGAAAGGAGGGGAAGAAGGGAGGGGTTCCGCGGT
GGCGGGTGACGGGGATAGTGCGGCGGCGGCGCAGGGCGGCGAAAGCAATG
GGTGGGGCGGGGGCGGCGGAGGCAGGCGGCAGCGGGCTCCGGTGATCACG
GACCAGCTGATTTCACTCAAGGCGGAGTTCTTGGAGCTGCACGACATGCT
CATGGAGAGCGACTTCCAGTGGGAGGAGAGCCAGCGGTTCTGCGAGGTGC
TCAAGCTGCAGCTCGACCAGCTGATGCTCGTGCCTCACCGCCACCGCGAC
ACCCTGGCGTCACCGATTTGATGTGGATGGATGTCGAGAGTGGTGTGGAA
TATTTTTAAGCTCATCCGGTATCAGAGCAGCGGCGGTAACAGTAGCGAGA
AGGAAGGAGTGTTCGTGATGGGGACGGGGGGGGGCTTGCCGCTAGCGCTG
TGATCGTGAGCAGCAACAAATAGCAGCGAAGGAGCGCGAAACGTACATAG
AAAAGAAGGTGATGGAGGATGAGGGCATAGAATGGTCGCGCTATCGCATG
TATGCGAGACCTGAACGCTCTGTGTTGTATGTTCTGGTACATTGGCGTGG
GAATCCTATACTAGAAGAGTCTGAAGCCGAGCCGGGCGAAGTGACGGATG
CTGCGTGGTAGGTTGACGGCATTGTTTCTGGACTTTTGGTCCAAGCTGCG
GAAGAAGAGTAGAAAAAAAAGGGTGCTTTGTTTCCTGTTTGCCGGATGTA
TCACGAGTCTCCGGGGGCGGAAAAATGCCAAGAACTGCTGTGACGGTGTG
CGTGGTGAAGTCAGTCAGCGGCGAGGGTGTTCGCGCGCGCCTGCCTTTCC
ACGAAAAGTGTTCGGTAGTGGGTCGTTGGAGGGATGTGCGCGGTCAACTA
TCTCTACCGCCACCACCCTCCTTTGACTCTTTCACCTTCTGATTGGACGA
TTTCAAACGTGGTGTTTCGATGTGTCGGGGCGATGAACCGCTCGAGCGAT
CGATCCTGTGCTTGCTTCCTTCCTGTTTGCCTGCGTGCGTGAATTTTGAA
GTGTTTTTACAGGGTCGGTTGTCGCTATAGCACTATGTACGATGATGATG
ATGATGGTGGTTGGATACATGGCGAACGCATGTTTTGTGCAGGCTCGCCG
GACGAGTGCGTTGTTTACGGGACAACAATCGGTTGGCTCCCTTGTGAGGT
CCGACTTGGTACAACAACAGTCGTTGGTTGCGCATGAAAGTGTTGTCTCG
ACAGCAGCAATGGCATGGAGTCGCATCACCCAAGTTGGCGTACAGTAGGT
AAACACACACGAATGAATTCAGGTGCAGGTACCAGAACACTGCTTTCTTC
GCCTATTTTGCTGCCGTGCTCCCCCCGTCTCTGCGTCATGTAGCCGTGCG
CTTGGGTGTGTATACCTCCGGCGTCCCACCGGCGTCCCACCGGCGTCCCA
CTACGTCTGAAGGGTTTGGAGTGCTTCTTAAACGTTGACGATTGATTTGT
CATGCTACATCAAGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11731:1920..3584+

>mRNA_E-fasciculatus_F_contig11731.1370.1 ID=mRNA_E-fasciculatus_F_contig11731.1370.1|Name=mRNA_E-fasciculatus_F_contig11731.1370.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=876bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11731:1920..3584+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCACCGGGGGGGGGGGGGGGCGGCGGTGGCGGCGGCGGCGGCGGCCC
GCGAGAGTCCCCCCTCTCGATGCACTCTGCGTCGCCCCTGGCGCTCGGCC
CGCACGGCTCGCGGTCTTCGCCACAGTCTGGTCCGAAAGGAGGGGAAGAA
GGGAGGGGTTCCGCGGTGGCGGGTGACGGGGATAGTGCGGCGGCGGCGCA
GGGCGGCGAAAGCAATGGGTGGGGCGGGGGCGGCGGAGGCAGGCGGCAGC
GGGCTCCGGTGATCACGGACCAGCTGATTTCACTCAAGGCGGAGTTCTTG
GAGCTGCACGACATGCTCATGGAGAGCGACTTCCAGTGGGAGGAGAGCCA
GCGGTTCTGCGAGGTGCTCAAGCTGCAGCTCGACCAGCTGATGCTCGTGC
CTCACCGCCACCGCGACACCCTGGCGTCACCGATTTGAATGCCACCGGGG
GGGGGGGGGGGCGGCGGTGGCGGCGGCGGCGGCGGCCCGCGAGAGTCCCC
CCTCTCGATGCACTCTGCGTCGCCCCTGGCGCTCGGCCCGCACGGCTCGC
GGTCTTCGCCACAGTCTGGTCCGAAAGGAGGGGAAGAAGGGAGGGGTTCC
GCGGTGGCGGGTGACGGGGATAGTGCGGCGGCGGCGCAGGGCGGCGAAAG
CAATGGGTGGGGCGGGGGCGGCGGAGGCAGGCGGCAGCGGGCTCCGGTGA
TCACGGACCAGCTGATTTCACTCAAGGCGGAGTTCTTGGAGCTGCACGAC
ATGCTCATGGAGAGCGACTTCCAGTGGGAGGAGAGCCAGCGGTTCTGCGA
GGTGCTCAAGCTGCAGCTCGACCAGCTGATGCTCGTGCCTCACCGCCACC
GCGACACCCTGGCGTCACCGATTTGA
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