mRNA_E-fasciculatus_F_contig1173.1368.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1173.1368.1 vs. uniprot
Match: A0A6H5KTW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTW3_9PHAE) HSP 1 Score: 991 bits (2561), Expect = 0.000e+0 Identity = 551/670 (82.24%), Postives = 572/670 (85.37%), Query Frame = 1
Query: 22 PKLASRHERESMVVRGLLRDVGFRTVADGXXXXXXXXXXKVLSEEATAVKGHGQGIKGDFGASNKSEVDMFEVLSEERVQLCLTLEHAADTISVYLGVSPESWPVGMVPGFSAVQVEGVCRRLSGNGKSVYLAVARAGGGTVQVLSLALPPPPENLPALGWLAPPRPPSVRGVGSTTFVGHQPGHLASIPVPACQATTATXXXXXXXXXXXXXASTAFLNSSDDSVRSDGVGHIAPSAPLLLFPRPTTRPVTSSAGDDAGHHGINTRKIIRGDSGGAGCSGHESVEPVVMASGRGVIRATRGGRVVLLDTHPADAPPSPPPKDTISGEGGDSGASVAAAAAGSWTCPGGNGVAVMKQARVGDGSVPPPPLSSRENASAGRNAATVAVRDRGMDVFPKASSKETSTRAQPAFPGQVSEPVLRAPRRSVLQPSAAMEAPGASSGSSRTLGTMCKRGILVRATRRLSCLSVVGVRFAKAATWCKNCGPVREKDLSFGRCWGRCDVSSNWEVRWEGSANIDDGTAQALVLLDGEDVVKLLKLSTVARNDIEEAARRHGPVSFSGQSRGHSKSALASAVGPAPPPALAXXXXXXXXXXGQASCSSKAGHVSASCVQTFPRGGGSRGG-YGSAVVDVMGEGMETLTLPKLVLQGSGLKAVDARGEAYAVLARLGEL 2028
PKLAS HERESMVVRGLLR VGFRTVADG KVL TAVK G GIKGD GAS SEVDMFEVLSEERVQLCLTLEHAAD ISVYLGVSPE+WPVGMVPGF VQVEGVCRRLSGNGKSVYLAVARAGGGTV+VLSLALPPPPENLPALGW APP PPSVRGV STT +GH+PG+LAS+PVPACQATTATXXXXXXXXXXXXX F+NSSDDSVRSD VGH SAPLLLFPRP TRPV+S A DDA H GINT + IRG SGG GCSGHESV+PVVMASGRGVIRATRGGRVVLLDTHPADAPPSPPP DTIS +GGD+GASVA AAAGSW CP GNG A K+ARVGDGSVPP PLSSREN SAGR AATV VRD GMD+ PKASSKE ST A+ GQVSEPVLR P RSV Q AAMEAPGA+S SS TLG M KRGILVRAT SCLSVVGVRFAKAATWCKNCGPVREKDLS GRCWGRCDVSSNWEVRWEGSANIDDGTAQ LVLLDGEDVVKLLKLST+AR+DIEEAARRHGPVSFSGQS GHS SALASAVG APP ALA G+ASCSS+AGHVSASCVQ FPRGGGSRGG YGSAVVDVMGEGMETLTLPKLVL GSGL+ VDARGEAYAVLARLGEL
Sbjct: 1981 PKLASGHERESMVVRGLLRYVGFRTVADGGGNGRRRQ--KVLPAAVTAVKDQGHGIKGDLGASTTSEVDMFEVLSEERVQLCLTLEHAADKISVYLGVSPEAWPVGMVPGFCTVQVEGVCRRLSGNGKSVYLAVARAGGGTVRVLSLALPPPPENLPALGWSAPPHPPSVRGVSSTTRLGHEPGYLASMPVPACQATTATXXXXXXXXXXXXXXX--FMNSSDDSVRSDRVGHTPSSAPLLLFPRPRTRPVSSFARDDADHSGINTSQRIRGSSGGWGCSGHESVDPVVMASGRGVIRATRGGRVVLLDTHPADAPPSPPPNDTISCDGGDNGASVADAAAGSWACPEGNGGAAWKRARVGDGSVPPFPLSSRENTSAGRRAATVPVRDLGMDLIPKASSKEVSTWAELTLAGQVSEPVLRVPPRSVSQQPAAMEAPGATSSSSSTLGAMFKRGILVRATTNFSCLSVVGVRFAKAATWCKNCGPVREKDLSMGRCWGRCDVSSNWEVRWEGSANIDDGTAQGLVLLDGEDVVKLLKLSTIARDDIEEAARRHGPVSFSGQSGGHSNSALASAVGAAPPTALAQARAALAAAAGRASCSSRAGHVSASCVQAFPRGGGSRGGGYGSAVVDVMGEGMETLTLPKLVLHGSGLEVVDARGEAYAVLARLGEL 2646
BLAST of mRNA_E-fasciculatus_F_contig1173.1368.1 vs. uniprot
Match: D7G4W4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4W4_ECTSI) HSP 1 Score: 447 bits (1150), Expect = 5.910e-148 Identity = 238/279 (85.30%), Postives = 246/279 (88.17%), Query Frame = 1
Query: 1195 MDVFPKASSKETSTRAQPAFPGQVSEPVLRAPRRSVLQPSAAMEAPGASSGSSRTLGTMCKRGILVRATRRLSCLSVVGVRFAKAATWCKNCGPVREKDLSFGRCWGRCDVSSNWEVRWEGSANIDDGTAQALVLLDGEDVVKLLKLSTVARNDIEEAARRHGPVSFSGQSRGHSKSALASAVGPAPPPALAXXXXXXXXXXGQASCSSKAGHVSASCVQTFPRGGGSRGG-YGSAVVDVMGEGMETLTLPKLVLQGSGLKAVDARGEAYAVLARLGEL 2028
MD+ PKASSKE ST A+ PGQVSEPVLRAP RSV Q AAMEAPGA+S SS TLGTM K GILVRAT SCLSVV VRFAKAATWCKNCGPVREKDLSFGRCWGRCDVSSNWEVRWEGSANIDDGTAQALVLLDGEDVVKLLK+ST+ARN IEEAARRHGPVSFSGQS GHS SALASAVGPAPPPALA G+ASCSS+AGHVSASCVQTFPRGGGSRGG YGSAVVDVMGEGMETLTLPKLVLQGSGL+ VDARGEAYAVLARLGEL
Sbjct: 1 MDLIPKASSKEVSTWAEQTLPGQVSEPVLRAPPRSVSQQPAAMEAPGATSSSSPTLGTMFKHGILVRATTNFSCLSVVCVRFAKAATWCKNCGPVREKDLSFGRCWGRCDVSSNWEVRWEGSANIDDGTAQALVLLDGEDVVKLLKISTIARNGIEEAARRHGPVSFSGQSGGHSNSALASAVGPAPPPALAQARAALAAAAGRASCSSRAGHVSASCVQTFPRGGGSRGGGYGSAVVDVMGEGMETLTLPKLVLQGSGLEVVDARGEAYAVLARLGEL 279
BLAST of mRNA_E-fasciculatus_F_contig1173.1368.1 vs. uniprot
Match: D7G4W5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4W5_ECTSI) HSP 1 Score: 73.2 bits (178), Expect = 1.880e-9 Identity = 41/59 (69.49%), Postives = 41/59 (69.49%), Query Frame = 1
Query: 19 GPKLASRHERESMVVRGLLRDVGFRTVADGXXXXXXXXXXKVLSEEATAVKGHGQGIKG 195
GPKLAS HERESMVVRGLLRDVGFRTVADG K L TAVKG G GIKG
Sbjct: 786 GPKLASGHERESMVVRGLLRDVGFRTVADGGGDGRRRQ--KALPAAVTAVKGQGHGIKG 842 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1173.1368.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1173.1368.1 >prot_E-fasciculatus_F_contig1173.1368.1 ID=prot_E-fasciculatus_F_contig1173.1368.1|Name=mRNA_E-fasciculatus_F_contig1173.1368.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=659bp MVVRGLLRDVGFRTVADGGGGGGRRRQQKVLSEEATAVKGHGQGIKGDFGback to top mRNA from alignment at E-fasciculatus_F_contig1173:13776..19629- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1173.1368.1 ID=mRNA_E-fasciculatus_F_contig1173.1368.1|Name=mRNA_E-fasciculatus_F_contig1173.1368.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=5854bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1173:13776..19629- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1173:13776..19629- >mRNA_E-fasciculatus_F_contig1173.1368.1 ID=mRNA_E-fasciculatus_F_contig1173.1368.1|Name=mRNA_E-fasciculatus_F_contig1173.1368.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=3954bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1173:13776..19629- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |