mRNA_E-fasciculatus_F_contig1173.1367.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1173.1367.1
Unique NamemRNA_E-fasciculatus_F_contig1173.1367.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1173.1367.1 vs. uniprot
Match: D8LQ43_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ43_ECTSI)

HSP 1 Score: 67.0 bits (162), Expect = 9.880e-13
Identity = 36/55 (65.45%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 VVATPSCVWRRMLVTWPAINRALAAAATIHPVPPHYFSPQALRQGGCQWLPASAR 165
            V+ATPS VWRRM+VTWPAINR L         P + F  QALRQGGCQWLP SAR
Sbjct:    5 VLATPSYVWRRMVVTWPAINRGLQQRRC----PTNDF--QALRQGGCQWLPTSAR 53
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1173.1367.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ43_ECTSI9.880e-1365.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1173contigE-fasciculatus_F_contig1173:9623..11172 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_006210.1
Exons2
Model size334
Cds size135
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1173.1367.1prot_E-fasciculatus_F_contig1173.1367.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1173 9656..11006 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927684.2214165-UTR-E-fasciculatus_F_contig1173:9622..96551622927684.2214165-UTR-E-fasciculatus_F_contig1173:9622..9655Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1173 9623..9655 +
1695995648.9689062-UTR-E-fasciculatus_F_contig1173:9622..96551695995648.9689062-UTR-E-fasciculatus_F_contig1173:9622..9655Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1173 9623..9655 +
1622927684.2549508-UTR-E-fasciculatus_F_contig1173:11006..111721622927684.2549508-UTR-E-fasciculatus_F_contig1173:11006..11172Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1173 11007..11172 +
1695995648.9940958-UTR-E-fasciculatus_F_contig1173:11006..111721695995648.9940958-UTR-E-fasciculatus_F_contig1173:11006..11172Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1173 11007..11172 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927684.2325428-CDS-E-fasciculatus_F_contig1173:9655..97031622927684.2325428-CDS-E-fasciculatus_F_contig1173:9655..9703Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1173 9656..9703 +
1695995648.9774683-CDS-E-fasciculatus_F_contig1173:9655..97031695995648.9774683-CDS-E-fasciculatus_F_contig1173:9655..9703Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1173 9656..9703 +
1622927684.2444136-CDS-E-fasciculatus_F_contig1173:10919..110061622927684.2444136-CDS-E-fasciculatus_F_contig1173:10919..11006Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1173 10920..11006 +
1695995648.9859328-CDS-E-fasciculatus_F_contig1173:10919..110061695995648.9859328-CDS-E-fasciculatus_F_contig1173:10919..11006Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1173 10920..11006 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1173.1367.1

>prot_E-fasciculatus_F_contig1173.1367.1 ID=prot_E-fasciculatus_F_contig1173.1367.1|Name=mRNA_E-fasciculatus_F_contig1173.1367.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=45bp
MLVTWPAINRALAAAATIHPVPPHYFSPQALRQGGCQWLPASAR*
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mRNA from alignment at E-fasciculatus_F_contig1173:9623..11172+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1173.1367.1 ID=mRNA_E-fasciculatus_F_contig1173.1367.1|Name=mRNA_E-fasciculatus_F_contig1173.1367.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1550bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1173:9623..11172+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCGTCGCAACACCCAGCTGCGTCTGGAGGAGGATGCTGGTGACGTGGCC
GGCCATCAACAGGGCCCTTGCAGCAGCGGCGGTGCCCGACGTGAGTATCC
TGTTGTTGCTAGACAGACAAGGTTGCGGTTCCTGGTACCGCCTTGTCTAG
CCCGTACTGGCTGTTCCTGTGGTTGCTGGTGCTGTGCCTTGTGGTACTCT
TAGATACTACAAGTGCTGCTTTTCCTGCCAAAGAAACTGCTGTTTCCTGC
AGAGAAAACATTTTAACGATCAGCATGTACAATATGCTGTACAGAGTGCA
CGCCTCCATTTTGAAGTCGCCGTGCCTCTACTCCAACAAAGATACCAAGG
CCGTCTCGCTGCTGTCCTTGGCTATGTTGACCCTCTAAATGCTTGCTTAG
CTGTATATGCTATGCACTATGATCTGCTGTACGTGCAACCGATGCTGTAT
TTTGGCAGCGTGGTCAATTTTGTTGTCGATGCACTCTTTTCTCTTTTGTG
TTTGGCACCGTGCGCAATACATGGCGCCAAATACCACACCCCCGAAGCAC
CGTTTCTCCGTGACGAGAGAAGGGTACTTAGAGAGATGAAGTTGATTTTT
TATAGTCCTCCACAGCAGCCCTCTGCCTGTAGTGTCCGCTGTTGCGAAAA
CCGAACATGATTTATTGTGGAGGAATCGAGCGTCAAAAAGAATCGTGACC
CATAGAGCAGCAGTTGCGAGCAGCCCTCGAGAGATGCAGATGACATTCGG
CGGGCACATGTGTGGTCATGCAGCGTAAGAAGTAGTACCCGCAACATGCG
ATCTACCGCAGCCGCCACATAACCTCAACTACTACGGTAGCACCACGGCA
CAAGTTGAAAGCCTACGCGCACCGGTCGAGTATGCCACGGACTCCGCGCC
GGAGCCGTTGAACCCCGTCTTGCTCCCGAAATGAAAGGGCTTGGGAAGCC
TAACATAGTTTGCCTCCAAACCGCTCCACTTCTTCCCCCCGCCTTGCCAA
CGAAGTTTAGCAACCTTGGATCTTCCTTAGCTCCACGATCTGTCGCGTCG
GACCCGCTCCTTTCGCACGGCACTGTACGCGCCTGTATGGGTGCCCTCCT
AGCGGCTGTCGTCCCTGCTGCCGTGTCTGCTGCCGTTTCTGTTGCCGCTA
TGCGGCCAACCGATGCTTGAGGCCATCCAGATACTGTTGCCGTGCACCGG
TTCCACAACTCTACAAGTAGTGGCTGTACCGATCAAGGGTGTGTTTCAAA
AAATATTACTGGTGACTTGAGACTTTCACCACCAACACAATGCCTAGACT
ATACATCCCGTGCCGCCACATTATTTTTCACCACAGGCTCTACGGCAAGG
CGGATGCCAATGGCTGCCGGCTAGCGCACGGTGACACAGAGGGGTGCAGT
TGGTTTATCTCGAGAATTTGCCCATCAACGTGATCGGATGGGGAACGCAC
TCGGTGGAGGAGATGTTGGGTGGGGCGGAGAGCGGCACTGACCGCATCTC
TGCCGGAGAGGGGGTTCCGCTCCTCGAGCCAACGGCGTTGGCCGCTACCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1173:9623..11172+

>mRNA_E-fasciculatus_F_contig1173.1367.1 ID=mRNA_E-fasciculatus_F_contig1173.1367.1|Name=mRNA_E-fasciculatus_F_contig1173.1367.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=270bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1173:9623..11172+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCTGGTGACGTGGCCGGCCATCAACAGGGCCCTTGCAGCAGCGGCGAT
GCTGGTGACGTGGCCGGCCATCAACAGGGCCCTTGCAGCAGCGGCGACTA
TACATCCCGTGCCGCCACATTATTTTTCACCACAGGCTCTACGGCAAGGC
GGATGCCAATGGCTGCCGGCTAGCGCACGGTGAACTATACATCCCGTGCC
GCCACATTATTTTTCACCACAGGCTCTACGGCAAGGCGGATGCCAATGGC
TGCCGGCTAGCGCACGGTGA
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