mRNA_E-fasciculatus_F_contig11729.1366.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11729.1366.1
Unique NamemRNA_E-fasciculatus_F_contig11729.1366.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11729.1366.1 vs. uniprot
Match: D8LFZ4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFZ4_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 5.960e-27
Identity = 49/49 (100.00%), Postives = 49/49 (100.00%), Query Frame = 1 
Query:    1 FADHLKNTEYKWPFWKHWCNVVELQPDNAQRVFVSNVLAALVKLSYTDR 147
            FADHLKNTEYKWPFWKHWCNVVELQPDNAQRVFVSNVLAALVKLSYTDR
Sbjct:  536 FADHLKNTEYKWPFWKHWCNVVELQPDNAQRVFVSNVLAALVKLSYTDR 584
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BLAST of mRNA_E-fasciculatus_F_contig11729.1366.1 vs. uniprot
Match: A0A836C9J1_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9J1_9STRA)

HSP 1 Score: 70.5 bits (171), Expect = 7.060e-13
Identity = 29/49 (59.18%), Postives = 38/49 (77.55%), Query Frame = 1 
Query:    1 FADHLKNTEYKWPFWKHWCNVVELQPDNAQRVFVSNVLAALVKLSYTDR 147
            FA+HLK+TE+KWPFW+HW  V++ Q D+ QR+FV   L  LV+LSY DR
Sbjct:  501 FANHLKDTEFKWPFWQHWAGVLQEQRDHPQRMFVEMALDMLVRLSYRDR 549
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11729.1366.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LFZ4_ECTSI5.960e-27100.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A836C9J1_9STRA7.060e-1359.18Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11729contigE-fasciculatus_F_contig11729:641..796 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score111.3
Seed ortholog evalue1.4e-22
Seed eggNOG ortholog2880.D8LFZ4
Preferred nameNCBP1
KEGG koko:K12882,ko:K13288
KEGG Pathwayko03008,ko03013,ko03015,ko03040,map03008,map03013,map03015,map03040
KEGG ModuleM00399
GOsGO:0000003,GO:0000184,GO:0000243,GO:0000245,GO:0000339,GO:0000340,GO:0000375,GO:0000377,GO:0000394,GO:0000398,GO:0000956,GO:0001101,GO:0001558,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0005739,GO:0005829,GO:0005844,GO:0005845,GO:0005846,GO:0006139,GO:0006351,GO:0006353,GO:0006354,GO:0006366,GO:0006368,GO:0006369,GO:0006370,GO:0006379,GO:0006396,GO:0006397,GO:0006401,GO:0006402,GO:0006403,GO:0006405,GO:0006406,GO:0006417,GO:0006446,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006950,GO:0006970,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0008104,GO:0008150,GO:0008152,GO:0008334,GO:0008380,GO:0008543,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009301,GO:0009314,GO:0009416,GO:0009452,GO:0009628,GO:0009648,GO:0009719,GO:0009725,GO:0009737,GO:0009791,GO:0009889,GO:0009892,GO:0009893,GO:0009987,GO:0010033,GO:0010228,GO:0010467,GO:0010468,GO:0010556,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0014070,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016073,GO:0016246,GO:0016441,GO:0016458,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019439,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0023052,GO:0030307,GO:0030422,GO:0031047,GO:0031050,GO:0031053,GO:0031123,GO:0031124,GO:0031323,GO:0031325,GO:0031326,GO:0031440,GO:0031442,GO:0031503,GO:0031974,GO:0031981,GO:0032268,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0033036,GO:0033120,GO:0033993,GO:0034248,GO:0034470,GO:0034518,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0034655,GO:0034660,GO:0035194,GO:0035195,GO:0035196,GO:0036260,GO:0040008,GO:0040029,GO:0042221,GO:0042795,GO:0042886,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043331,GO:0043484,GO:0043900,GO:0043901,GO:0043903,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044260,GO:0044265,GO:0044270,GO:0044271,GO:0044344,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045069,GO:0045071,GO:0045184,GO:0045927,GO:0045935,GO:0046483,GO:0046700,GO:0046907,GO:0048024,GO:0048026,GO:0048518,GO:0048519,GO:0048522,GO:0048525,GO:0048571,GO:0048573,GO:0048574,GO:0048608,GO:0048731,GO:0048856,GO:0050657,GO:0050658,GO:0050684,GO:0050685,GO:0050789,GO:0050792,GO:0050794,GO:0050896,GO:0051028,GO:0051098,GO:0051099,GO:0051128,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051246,GO:0051252,GO:0051254,GO:0051641,GO:0051649,GO:0051716,GO:0060255,GO:0061458,GO:0065003,GO:0065007,GO:0065009,GO:0070013,GO:0070727,GO:0070848,GO:0070887,GO:0070918,GO:0071166,GO:0071310,GO:0071359,GO:0071363,GO:0071407,GO:0071426,GO:0071427,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071774,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0097305,GO:0097659,GO:0098781,GO:0098787,GO:0098789,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901575,GO:1901576,GO:1901698,GO:1901699,GO:1901700,GO:1903311,GO:1903313,GO:1903900,GO:1903901,GO:1905214,GO:1905216,GO:1990904,GO:2000112
EggNOG free text desc.primary miRNA processing
EggNOG OGsKOG1104@1,KOG1104@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03009,ko03019,ko03041
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size156
Cds size156
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927684.17385-CDS-E-fasciculatus_F_contig11729:640..7961622927684.17385-CDS-E-fasciculatus_F_contig11729:640..796Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11729 641..796 -
1695995648.9570396-CDS-E-fasciculatus_F_contig11729:640..7961695995648.9570396-CDS-E-fasciculatus_F_contig11729:640..796Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11729 641..796 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11729.1366.1prot_E-fasciculatus_F_contig11729.1366.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11729 641..796 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11729.1366.1

>prot_E-fasciculatus_F_contig11729.1366.1 ID=prot_E-fasciculatus_F_contig11729.1366.1|Name=mRNA_E-fasciculatus_F_contig11729.1366.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=52bp
FADHLKNTEYKWPFWKHWCNVVELQPDNAQRVFVSNVLAALVKLSYTDRY
L*
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mRNA from alignment at E-fasciculatus_F_contig11729:641..796-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11729.1366.1 ID=mRNA_E-fasciculatus_F_contig11729.1366.1|Name=mRNA_E-fasciculatus_F_contig11729.1366.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=156bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11729:641..796- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCGCCGACCACCTCAAGAACACGGAGTACAAGTGGCCTTTCTGGAAGCA
CTGGTGTAACGTGGTGGAGCTGCAACCGGACAATGCTCAGAGGGTGTTCG
TGTCGAACGTCCTGGCTGCGCTGGTGAAGCTGAGCTACACCGACAGGTAC
TTGTAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11729:641..796-

>mRNA_E-fasciculatus_F_contig11729.1366.1 ID=mRNA_E-fasciculatus_F_contig11729.1366.1|Name=mRNA_E-fasciculatus_F_contig11729.1366.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=312bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11729:641..796- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TTCGCCGACCACCTCAAGAACACGGAGTACAAGTGGCCTTTCTGGAAGCA
CTGGTGTAACGTGGTGGAGCTGCAACCGGACAATGCTCAGAGGGTGTTCG
TGTCGAACGTCCTGGCTGCGCTGGTGAAGCTGAGCTACACCGACAGGTAC
TTGTAGTTCGCCGACCACCTCAAGAACACGGAGTACAAGTGGCCTTTCTG
GAAGCACTGGTGTAACGTGGTGGAGCTGCAACCGGACAATGCTCAGAGGG
TGTTCGTGTCGAACGTCCTGGCTGCGCTGGTGAAGCTGAGCTACACCGAC
AGGTACTTGTAG
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