mRNA_E-fasciculatus_F_contig11728.1365.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11728.1365.1
Unique NamemRNA_E-fasciculatus_F_contig11728.1365.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11728.1365.1 vs. uniprot
Match: D7FZV3_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZV3_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 5.940e-29
Identity = 71/106 (66.98%), Postives = 73/106 (68.87%), Query Frame = 1 
Query:    1 NYVAIAELETEVSHAHEDRLVREKQLLATIKDLNEERESEKIRLEEKLATLDVELTAIKEYQENSQIYEQTLKDMEAKVAGCKDAFNEEMALLNSQLEEEWETGRR 318
            NYVAIAELE +                              IRL EKL TLDVELTAIKEYQENSQIYEQTLKDMEAK+AGCKDAFNEEMALLNSQLEEEWETGRR
Sbjct:   89 NYVAIAELEAQ------------------------------IRLGEKLGTLDVELTAIKEYQENSQIYEQTLKDMEAKIAGCKDAFNEEMALLNSQLEEEWETGRR 164
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11728.1365.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZV3_ECTSI5.940e-2966.98Flagellar associated protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11728contigE-fasciculatus_F_contig11728:341..2293 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size321
Cds size318
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11728.1365.1prot_E-fasciculatus_F_contig11728.1365.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11728 342..2293 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927684.1023633-CDS-E-fasciculatus_F_contig11728:341..4461622927684.1023633-CDS-E-fasciculatus_F_contig11728:341..446Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11728 342..446 -
1695995648.9119809-CDS-E-fasciculatus_F_contig11728:341..4461695995648.9119809-CDS-E-fasciculatus_F_contig11728:341..446Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11728 342..446 -
1622927684.1144533-CDS-E-fasciculatus_F_contig11728:1094..11841622927684.1144533-CDS-E-fasciculatus_F_contig11728:1094..1184Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11728 1095..1184 -
1695995648.9234517-CDS-E-fasciculatus_F_contig11728:1094..11841695995648.9234517-CDS-E-fasciculatus_F_contig11728:1094..1184Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11728 1095..1184 -
1622927684.1256661-CDS-E-fasciculatus_F_contig11728:1680..17701622927684.1256661-CDS-E-fasciculatus_F_contig11728:1680..1770Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11728 1681..1770 -
1695995648.9350295-CDS-E-fasciculatus_F_contig11728:1680..17701695995648.9350295-CDS-E-fasciculatus_F_contig11728:1680..1770Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11728 1681..1770 -
1622927684.1362317-CDS-E-fasciculatus_F_contig11728:2260..22931622927684.1362317-CDS-E-fasciculatus_F_contig11728:2260..2293Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11728 2261..2293 -
1695995648.9438329-CDS-E-fasciculatus_F_contig11728:2260..22931695995648.9438329-CDS-E-fasciculatus_F_contig11728:2260..2293Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11728 2261..2293 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11728.1365.1

>prot_E-fasciculatus_F_contig11728.1365.1 ID=prot_E-fasciculatus_F_contig11728.1365.1|Name=mRNA_E-fasciculatus_F_contig11728.1365.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=106bp
NYVAIAELETEVSHAHEDRLVREKQLLATIKDLNEERESEKIRLEEKLAT
LDVELTAIKEYQENSQIYEQTLKDMEAKVAGCKDAFNEEMALLNSQLEEE
WETGRR
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mRNA from alignment at E-fasciculatus_F_contig11728:341..2293-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11728.1365.1 ID=mRNA_E-fasciculatus_F_contig11728.1365.1|Name=mRNA_E-fasciculatus_F_contig11728.1365.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1953bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11728:341..2293- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AACTACGTCGCAATCGCCGAGCTTGAAACTGAGGTACGAGAAAGGGGGCA
ACAGGTTACGCTAGCATAAACTCTCGCAAGTTCCAGAGAGGGACGCCCCT
ACCTGTGTTTGTACGAATAGGTGTAGAGAAATATAGGTAACATGCTGAGT
GAACTTCCACCCACGGTCGAGGAAATTCGTTCTGGGCAAGAACGCAACGT
ATTGGCCTCCCCCAGATTCCCAATCCTTAGTATGCCTCTCTCTCGGTTCA
TATTGTAATGCTGTACAGTTCTCCTACTCCACGCTGTCACATTAGCGTGC
TTCCCCTGTACTTGACGCATGCACTCTTTCTGTGGACAGAATTCCTGCCT
GGCCGATGGAACGTGTCTAGAGAGAACAAAATCTGGGTGGTAAGAGGTTT
ACAGGGTACATACGAGAACAATACTCAATGGAAACGTGTGACATACGCAA
AGGGCATGTGGTTCGTGCTAGACTCTATTTACACAACACTTCCAATGCCG
TCCCTAAAACGGCTCGTACCCAGGTGTCGCACGCTCACGAGGACAGGCTA
GTGCGGGAAAAACAGCTTCTCGCTACGATAAAGGACCTGAACGAAGAGCG
CGAGAGCGAAAAGGTACGATATTCTGTTAGGTTTGTGTATCTTTCTGCCC
CGCCAACAGACCAACGGAAACATTGTCAGTCGCGCCGTGGACGGAGCCGA
GAGACACCAATTTTTGCATACCTGTCAAAGACGCGCGCATTTCAATGCAA
ATCAGCATGGTGAGTTGCCTAACGATCTAGTAAGTAGGCACCACGGCTGT
GTCACGCGCTCTGCATAGGGTGATTGGTGCACGAATCCCAGCAGGCACTA
CCCTGTGCGGGCCCACCGTTACCCGAAGCAGGCCTCCTTTGGGGTTGACG
CCCCTGACGCACCGCAAATCATGATCGTATCCTCAGGCACCGAAGCGTTG
GCCGCGGCAAAGGCAACCCCAACCAGTGTGCGGGCATTTTCTCCATGAGA
GCCTCGTATTTCCACCGTTCTACCCTTTGCCGTAGTTTTCCAGCAGCTAC
ACAACCATGATAAAACCCCATGACCACCTCGTGCACTATCGTCCATTAAT
CCCTGCTAGATACGGCTGGAGGAGAAACTGGCGACCCTGGATGTCGAGCT
CACGGCTATCAAAGAGTATCAAGAAAACTCACAAATCTACGAGCAGACGG
TACGACTACCTTGAAGGCGGTGTCGCCCTGGTGGTTAGATGGTTTGGACC
GGTCGTGCGTCCTGCAATGTAATACCCTGCGGCTTTGGGTGGAAGCGCCT
GCATTGAGGCACCGATATCGCTGACAGCATTCGCTGAGGCACCCGCAACG
GGTGTTGTTCTTGGTGAAGTTGCCAGTTCCCTAACCTTTCTGATGAGCTC
TCCCCGCTTGGTTCCGGACGGCGTAGGTTAATCATCTCATCAACATGTGT
TCCTGTTCGACCCTGCTAGAGGGACTCTTTATATCATTGTCGCACGCCGG
AACACCAGCAGGGAAACCGAACGTGTTCGTCTTGCTACTTGCTGGGAGTA
TGGGTTGGAACACGCTCGTCGTCTGCAGGGCATGTTTTGCTCACCACACT
CAGTGCCGGGAGCGGGTTCGTACCCGTAGCAATTTCTGTGGTTTCCCAGT
CAGAAAAGGCACCGATGGGCTGCAACACCTCGAGTGCCCCTTATCTTCAT
CGCTCTGGTGAACACAGTTGATCCAACACGACACTAGCAGTATGCCCGAA
CTACGTTTTTACGGTGCACGTCTCGACGCGTGTCTCAAGCTTGCTTTCTT
ATATCGTCAATCGCATTTTTTGGCCGTGATACTGTTCGCCAACGCAGTTG
AAGGACATGGAGGCCAAAGTAGCTGGTTGCAAGGACGCCTTCAATGAAGA
GATGGCCTTGCTGAACTCCCAGCTGGAGGAGGAGTGGGAAACTGGCCGCC
GAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11728:341..2293-

>mRNA_E-fasciculatus_F_contig11728.1365.1 ID=mRNA_E-fasciculatus_F_contig11728.1365.1|Name=mRNA_E-fasciculatus_F_contig11728.1365.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=636bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11728:341..2293- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AACTACGTCGCAATCGCCGAGCTTGAAACTGAGAACTACGTCGCAATCGC
CGAGCTTGAAACTGAGGTGTCGCACGCTCACGAGGACAGGCTAGTGCGGG
AAAAACAGCTTCTCGCTACGATAAAGGACCTGAACGAAGAGCGCGAGAGC
GAAAAGGTGTCGCACGCTCACGAGGACAGGCTAGTGCGGGAAAAACAGCT
TCTCGCTACGATAAAGGACCTGAACGAAGAGCGCGAGAGCGAAAAGATAC
GGCTGGAGGAGAAACTGGCGACCCTGGATGTCGAGCTCACGGCTATCAAA
GAGTATCAAGAAAACTCACAAATCTACGAGCAGACGATACGGCTGGAGGA
GAAACTGGCGACCCTGGATGTCGAGCTCACGGCTATCAAAGAGTATCAAG
AAAACTCACAAATCTACGAGCAGACGTTGAAGGACATGGAGGCCAAAGTA
GCTGGTTGCAAGGACGCCTTCAATGAAGAGATGGCCTTGCTGAACTCCCA
GCTGGAGGAGGAGTGGGAAACTGGCCGCCGATTGAAGGACATGGAGGCCA
AAGTAGCTGGTTGCAAGGACGCCTTCAATGAAGAGATGGCCTTGCTGAAC
TCCCAGCTGGAGGAGGAGTGGGAAACTGGCCGCCGA
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