mRNA_E-fasciculatus_F_contig1172.1362.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
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Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1172.1362.1 vs. uniprot
Match: D7G8A8_ECTSI (Ankyrin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G8A8_ECTSI) HSP 1 Score: 502 bits (1293), Expect = 7.120e-173 Identity = 340/365 (93.15%), Postives = 345/365 (94.52%), Query Frame = 1
Query: 139 MTASGVRARACTAAAPSLALLLLLLLGSERYTPSCLGFSLSAAPTSAVRSPAARPATAPVGRRGQSSSSSSSCCRVDVSCVPGRTCSALAA--SGEGEGSSVGPSAGGSGDIFDALMAGDMDFITKYVEAGGDCSVQDSIGDTPLMLAVESELTPAVRMLIKEGGANANVASKTTXXXXXXXXXXXXXXXXXXXXXXXXXAELELRNNKGETALSLACFWGNEDAVEYLLNAGADPNSRNDAGERPGDSFDSVFVPQVVENFFTADEDNDRASAAGQEDIMFDDDDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPAEKEDASLAGEEGGDGEAEEEVLGPRETILKMLEEARAEAALETK 1227
MTAS V ARACT APSLALLLLLLLGSERYTPSCLGFSLS APTSAVRSPAARPATAPVGRRG+SSSS CRVDVSCVPGRTCSALAA GEGEGSS GPSAGGSGDIFDALMAGDMDFITKYVEAGGDCSVQDSIGDTPLMLAVESELTPAVRMLIKEGGANAN+ASKTTXXXXXXXXXXXXXXXXXXXXXXXXX ELELRNNKG+TALSLACFWGNEDAVEYLLNAGADPNSRNDAGERPGDSFDSVFVPQVVENFFTADEDN+RASAAGQEDIMFDDDDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX PA KEDASLAGEEGGDGE EEEVLGPRE IL+MLEEARAEA LE K
Sbjct: 2 MTASSVTARACTTGAPSLALLLLLLLGSERYTPSCLGFSLSVAPTSAVRSPAARPATAPVGRRGKSSSS----CRVDVSCVPGRTCSALAAFGGGEGEGSSAGPSAGGSGDIFDALMAGDMDFITKYVEAGGDCSVQDSIGDTPLMLAVESELTPAVRMLIKEGGANANLASKTTXXXXXXXXXXXXXXXXXXXXXXXXXXELELRNNKGDTALSLACFWGNEDAVEYLLNAGADPNSRNDAGERPGDSFDSVFVPQVVENFFTADEDNERASAAGQEDIMFDDDDEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEPAGKEDASLAGEEGGDGEPEEEVLGPRENILQMLEEARAEATLEAK 362
BLAST of mRNA_E-fasciculatus_F_contig1172.1362.1 vs. uniprot
Match: A0A835ZGL3_9STRA (Ankyrin repeat-containing domain protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZGL3_9STRA) HSP 1 Score: 119 bits (299), Expect = 5.300e-27 Identity = 78/145 (53.79%), Postives = 105/145 (72.41%), Query Frame = 1
Query: 463 DIFDALMAGDMDFITKYVEAGGDCSVQDSIGDTPLMLAVESELTPAVRMLIKEGGANANVASKTTXXXXXXXXXXXXXXXXXXXXXXXXXAELELRNNKGETALSLACFWGNEDAVEYLLNAGADPNSRNDAGERPGDSFDSVFV 897
DIFDA++ GD + + +Y+ GGD +++DSIGD+PLMLA E++ T +++L+ EGGA+ N + XXXXXXXXXXXXXXXXXXXXXX +G+TAL++AC WGN D +YLL+ GADPN N G+R GD F++VFV
Sbjct: 75 DIFDAILEGDAESVARYIAHGGDVNIRDSIGDSPLMLAAENDFTDIIKLLVHEGGADINGKAGAGMETXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGDTALNVACHWGNVDTAQYLLDRGADPNCANHDGKRAGDEFETVFV 219
BLAST of mRNA_E-fasciculatus_F_contig1172.1362.1 vs. uniprot
Match: D8LP11_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LP11_ECTSI) HSP 1 Score: 65.5 bits (158), Expect = 3.180e-8 Identity = 41/148 (27.70%), Postives = 64/148 (43.24%), Query Frame = 1
Query: 454 GSGDIFDALMAGDMDFITKYVEAGGDCSVQDSIGDTPLMLAVESELTPAVRMLIKEGGANANVASKTTXXXXXXXXXXXXXXXXXXXXXXXXXAELELRNNKGETALSLACFWGNEDAVEYLLNA-GADPNSRNDAGERPGDSFDSVF 894
G ++FD + D+D + +YVE GG V D++GDT L++A + V++L A N A + N++G+TALSLA FWG D ++ LL+ D N G+R G+ +
Sbjct: 76 GEKNLFDCIREEDVDTLRRYVERGGPVHVADTLGDTSLLVAASTGNAEVVKILCGAPDAAVNYPCFHGGETPLMAACTQGHLAVTEFLVKEAGANVNATNHRGDTALSLAAFWGRLDCLKLLLSLPDTDTEILNVQGKRAGEGMQELM 223
BLAST of mRNA_E-fasciculatus_F_contig1172.1362.1 vs. uniprot
Match: A0A812IYA1_SYMMI (Hypothetical protein n=2 Tax=Symbiodinium TaxID=2949 RepID=A0A812IYA1_SYMMI) HSP 1 Score: 56.2 bits (134), Expect = 1.930e-5 Identity = 28/56 (50.00%), Postives = 35/56 (62.50%), Query Frame = 1
Query: 760 GETALSLACFWGNEDAVEYLLNAGADPNSRNDAGERPGDSFDSVFVPQVVENFFTA 927
G TAL +ACF GNED VE+LL A ADP+SRN+ G P +V+E+F A
Sbjct: 114 GSTALGVACFCGNEDMVEFLLLASADPDSRNNRGHTPVQLARHTHTRRVLEDFVGA 169
BLAST of mRNA_E-fasciculatus_F_contig1172.1362.1 vs. uniprot
Match: A0A812V9A4_9DINO (Ank2 protein n=2 Tax=unclassified Symbiodinium TaxID=279888 RepID=A0A812V9A4_9DINO) HSP 1 Score: 58.2 bits (139), Expect = 3.460e-5 Identity = 29/56 (51.79%), Postives = 36/56 (64.29%), Query Frame = 1
Query: 760 GETALSLACFWGNEDAVEYLLNAGADPNSRNDAGERPGDSFDSVFVPQVVENFFTA 927
G TAL +ACF GNED VE+LL AGADP+SRN+ G P +V+E+F A
Sbjct: 531 GSTALGVACFCGNEDMVEFLLLAGADPDSRNNRGHTPLHLARHAHTQRVLEDFVGA 586 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1172.1362.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1172.1362.1 >prot_E-fasciculatus_F_contig1172.1362.1 ID=prot_E-fasciculatus_F_contig1172.1362.1|Name=mRNA_E-fasciculatus_F_contig1172.1362.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=364bp MTASGVRARACTAAAPSLALLLLLLLGSERYTPSCLGFSLSAAPTSAVRSback to top mRNA from alignment at E-fasciculatus_F_contig1172:6707..10118+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1172.1362.1 ID=mRNA_E-fasciculatus_F_contig1172.1362.1|Name=mRNA_E-fasciculatus_F_contig1172.1362.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3412bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1172:6707..10118+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1172:6707..10118+ >mRNA_E-fasciculatus_F_contig1172.1362.1 ID=mRNA_E-fasciculatus_F_contig1172.1362.1|Name=mRNA_E-fasciculatus_F_contig1172.1362.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2184bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1172:6707..10118+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |