mRNA_E-fasciculatus_F_contig1012.128.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1012.128.1
Unique NamemRNA_E-fasciculatus_F_contig1012.128.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig1012.128.1 vs. uniprot
Match: D7G3Z6_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Z6_ECTSI)

HSP 1 Score: 353 bits (907), Expect = 2.710e-117
Identity = 172/229 (75.11%), Postives = 192/229 (83.84%), Query Frame = 3
Query:  138 MGKFAFGLALAFMLSLTSGGKTGGSRMKTYKVRVTNLTFKQDFSPPMIVVHEKGSKPLFSHGVRARHAVKLMAEEGINRKIQEIATNEAGFCGFAV--AKGPLLPGKTWHGEINFNAKKCKDPVYSVVAKLDNTNDAFMGIAGSKFPKDECPSKHFPPAFDAGTEKNNERCNCMPGRACPESTRNQREVHTRGSEGFIHVHRGFQGVGDLSKEDYGWQNPVAEVVVSKA 818
            M KFAFGLALA MLSL SG K  GSRM+TYKVRVTNLTFKQDFS  +IV HEKGS+PLFS G +AR+A+ ++AEEG++  +Q IAT E GFCGFA   +KG + PGKTW G+I F+A KCKDPVYSVVAKLDNTNDAFMGIAGSKFP   CPSKHFPPAFDAG+E NNE+C CMPGRACP+ TR+ RE H R SEGFIHVHRGFQG+GDLSK DYGWQNPVA VVVSKA
Sbjct:    1 MVKFAFGLALASMLSLASGSKMRGSRMQTYKVRVTNLTFKQDFSAAIIVAHEKGSRPLFSEGAKARNAISMLAEEGLSGNVQNIATRERGFCGFAAPESKGLIFPGKTWEGKIQFDANKCKDPVYSVVAKLDNTNDAFMGIAGSKFPAGSCPSKHFPPAFDAGSETNNEKCTCMPGRACPKGTRDARERHGRNSEGFIHVHRGFQGIGDLSK-DYGWQNPVAVVVVSKA 228          
BLAST of mRNA_E-fasciculatus_F_contig1012.128.1 vs. uniprot
Match: D7G405_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G405_ECTSI)

HSP 1 Score: 344 bits (883), Expect = 6.760e-114
Identity = 168/215 (78.14%), Postives = 183/215 (85.12%), Query Frame = 3
Query:  174 MLSLTSGGKTGGSRMKTYKVRVTNLTFKQDFSPPMIVVHEKGSKPLFSHGVRARHAVKLMAEEGINRKIQEIATNEAGFCGFAVAKGPLLPGKTWHGEINFNAKKCKDPVYSVVAKLDNTNDAFMGIAGSKFPKDECPSKHFPPAFDAGTEKNNERCNCMPGRACPESTRNQREVHTRGSEGFIHVHRGFQGVGDLSKEDYGWQNPVAEVVVSKA 818
            MLSL SGG T GS MKTYKVRVTNLTFKQDFSPP+IV HEKGS+PLFS G +AR A+K MAEEG+N  ++ IAT E+GFCGFAVA+GPLLPGKTW+GEI F+  KCK+PVYSVVAKL NTNDAFMGI GSKF  D+CPSK FPPAFDAGTEKNNE+C CMPGRACP S +  RE H RGSEGFIHVHRG  GVGDLSK DYGW NPVAEVVVSKA
Sbjct:    1 MLSLASGGSTSGSSMKTYKVRVTNLTFKQDFSPPIIVAHEKGSRPLFSMGGKARPAIKRMAEEGVNGMVKVIATRESGFCGFAVAEGPLLPGKTWNGEITFDTNKCKEPVYSVVAKLTNTNDAFMGIDGSKF-LDKCPSKRFPPAFDAGTEKNNEKCTCMPGRACPASPKT-RENHGRGSEGFIHVHRGIDGVGDLSKADYGWNNPVAEVVVSKA 213          
BLAST of mRNA_E-fasciculatus_F_contig1012.128.1 vs. uniprot
Match: D7G413_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G413_ECTSI)

HSP 1 Score: 304 bits (778), Expect = 3.170e-98
Identity = 152/204 (74.51%), Postives = 169/204 (82.84%), Query Frame = 3
Query:  216 MKTYKVRVTNLTFKQDFSPPMIVVHEKGSKPLFSHGVRARHAVKLMAEEGINRKIQEIATNEAGFCGFAVAKGPLLPGKTWHGEINFNAKKCKDPVYSVVAKLDNTNDAFMGIAGSKFPKDECPSKHFPPAFDAGTEKNNERCNCMPGRACPESTRNQREVHTRGSEGFIHVHRGFQGVGDLSKEDYGWQNPVAEVVVSKA*GE 827
            M+TYKVRVTNLTFKQDFSPP+IV HEKGS PLFS G +AR A+K MAEEG+NR I+ IAT E GFCGFA A+GPLLPGKTW+GEI F+A KCK PVYSVVAKL NTNDAFMGI GSKF  D+ PSK FPPAFDAGTEKNNE+C C+ GRACP S + +  +  RGSEGFIHVHRG  GVGDLS+ DY W+NPVAEVVVSK  GE
Sbjct:    1 METYKVRVTNLTFKQDFSPPIIVAHEKGS-PLFSKGRKARGAIKRMAEEGVNRFIEIIATREDGFCGFAAAEGPLLPGKTWNGEITFDANKCKRPVYSVVAKLTNTNDAFMGIDGSKF-LDKRPSKLFPPAFDAGTEKNNEKCTCIRGRACPASPKPRENLGGRGSEGFIHVHRGINGVGDLSQADYDWKNPVAEVVVSKVEGE 202          
BLAST of mRNA_E-fasciculatus_F_contig1012.128.1 vs. uniprot
Match: D7G3Z4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Z4_ECTSI)

HSP 1 Score: 302 bits (774), Expect = 1.250e-96
Identity = 156/213 (73.24%), Postives = 171/213 (80.28%), Query Frame = 3
Query:  180 SLTSGGKTGGSRMKTYKVRVTNLTFKQDFSPPMIVVHEKGSKPLFSHGVRARHAVKLMAEEGINRKIQEIATNEAGFCGFAVAKGPLLPGKTWHGEINFNAKKCKDPVYSVVAKLDNTNDAFMGIAGSKFPKDECPSKHFPPAFDAGTEKNNERCNCMPGRACPESTRNQREVHTRGSEGFIHVHRGFQGVGDLSKEDYGWQNPVAEVVVSKA 818
            S T+  + G SR    KVRVTNLTFKQDFSPP+IV HEKGS  LF  G +AR A+KLMAE+G NR I  IAT E GFCGFA A+GPLLPGKTW+GEI F+  KCK+PVYSVVAKL NTNDAFMGI GSKF  D+ PSK FPPAFDAGTEKNNE+C CMPGRACP S ++ RE H  GSEGFIHVHRG  GVGDLSK DYGW+NPVAEVVVSKA
Sbjct:   60 SRTTIDRGGTSRDDKGKVRVTNLTFKQDFSPPIIVAHEKGSH-LFPVGGKARPAIKLMAEDGNNRNIMAIATREGGFCGFAAAEGPLLPGKTWNGEITFDTDKCKEPVYSVVAKLTNTNDAFMGIDGSKF-LDKHPSKLFPPAFDAGTEKNNEKCTCMPGRACPASPKS-RENHGLGSEGFIHVHRGINGVGDLSKADYGWKNPVAEVVVSKA 269          
BLAST of mRNA_E-fasciculatus_F_contig1012.128.1 vs. uniprot
Match: D7FIE5_ECTSI (Spondin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIE5_ECTSI)

HSP 1 Score: 189 bits (480), Expect = 1.830e-53
Identity = 103/219 (47.03%), Postives = 132/219 (60.27%), Query Frame = 3
Query:  174 MLSLTSGGKTGGSRMKT--YKVRVTNLTFKQDFSPPMIVVHEKGSKPLFSHGVRARHAVKLMAEEGINRKIQEIATNE---AGFCGFAVAKGPLLPGKTWHGEINFNAKKCKDPVYSVVAKLDNTNDAFMGIAGSKFPKDECPSKHFPPAFDAGTEKNNERCNCMPGRACPESTRNQREVHTRGSEGFIHVHRGFQGVGDLSKEDYGWQNPVAEVVVSK 815
            M SL S     G    T  +KVRV NLT+ Q FSPP+IV H K    LF  G  A  A+KLMAE+G N  + E++ +       CG  VA+GP+ PG+TW G+++ +   C +PVYSVV  L NTNDAF+GI           +K FPPAFDAGTE N+ERC+ +PG  CP  + N +       EG+IHVHRG  GVGDL +  Y W+NPVAE+ + K
Sbjct:   10 MASLVSLANASGKDYNTVPFKVRVRNLTYLQPFSPPLIVAHTK-DVALFKEGFPANDAIKLMAEDGDNSALLELSESSDVAPYICGVVVAEGPVFPGETWRGQLDVDPYICPNPVYSVVTMLINTNDAFVGIDSDTLELGS--TKAFPPAFDAGTEVNDERCSNIPGPGCPAGSGNNQNGP---GEGYIHVHRGVHGVGDLEEASYDWRNPVAEIYIQK 222          
BLAST of mRNA_E-fasciculatus_F_contig1012.128.1 vs. uniprot
Match: D7G4K4_ECTSI (Spondin domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=D7G4K4_ECTSI)

HSP 1 Score: 189 bits (479), Expect = 2.200e-53
Identity = 108/230 (46.96%), Postives = 137/230 (59.57%), Query Frame = 3
Query:  138 MGKFAFGLALAFMLSLTSGGKTGGSRMKTYKVRVTNLTFKQDFSPPMIVVHEKGSKPLFSHGVRARHAVKLMAEEGINRKIQEIATNE---AGFCGFAVAKGPLLPGKTWHGEINFNAKKCKDPVYSVVAKLDNTNDAFMGIAGSKFPKDECPSKHFPPAFDAGTEKNNERCNCMPGRACPESTRNQREVHTRGSEGFIHVHRGFQGVG-DLSKEDYGWQNPVAEVVVSK 815
            M KF  G ALA +LSL        +    +KVRV NLT+ Q FSP ++V H      LF  G+ A  A+KLMAE+G N  + E+A ++      CG    +GP+ PG+TW G +  +   C DPVYSVV+ L NTNDAF+GI           SK FPPAFDAGTE NNE C  +PG ACP  + N  +V     E FIHVHRGF GVG DL + +Y W+NPVAEV +++
Sbjct:    1 MVKFTAGFALASVLSL--------AHATDFKVRVRNLTYLQPFSPMLVVAHTN-DVALFKEGLPASDAIKLMAEDGDNSALLELAASDDVAPYICGAVAGEGPVFPGETWRGTLTIDESACPDPVYSVVSMLINTNDAFVGIDSDDL-NVYGSSKVFPPAFDAGTEANNELCTHIPGPACPADSGNMEDVP---GEEFIHVHRGFHGVGPDLGEANYDWRNPVAEVFIAR 217          
BLAST of mRNA_E-fasciculatus_F_contig1012.128.1 vs. uniprot
Match: D7G4K3_ECTSI (Spondin domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4K3_ECTSI)

HSP 1 Score: 163 bits (413), Expect = 6.180e-44
Identity = 94/198 (47.47%), Postives = 117/198 (59.09%), Query Frame = 3
Query:  231 VRVTNLTFKQDFSPPMIVVHEKGSKPLFSHGVRARHAVKLMAEEGINRKIQEIATNE---AGFCGFAVAKGPLLPGKTWHGEINFNAKKCKDPVYSVVAKLDNTNDAFMGIAGSKFPKDECPSKHFPPAFDAGTEKNNERCNCMPGRACPESTRNQREVHTRGSEGFIHVHRGFQGVG-DLSKEDYGWQNPVAEVVVS 812
            VRV NLT+ Q FSP  +V H      +F  G  A  AVK+MAE+G N  + E+  +E      CG  + + PL PG TW G +  +   C D  YSVV+ L NTNDAF+GI  ++    E   K FPPAFDAGTE NNE C  +PG ACP  + N  +      EGFI V RGF GVG DL + +Y W+NPVAEVVV+
Sbjct:    9 VRVRNLTYLQPFSPMFVVAHTNDVS-IFREGFPASDAVKIMAEDGDNSALVELLASEDVEPYICGGVMGEAPLFPGDTWRGVMTVDESICPDAQYSVVSMLINTNDAFVGIDSNRLVGTE---KVFPPAFDAGTEANNELCTHIPGPACPADSGNMEDGP---GEGFISVSRGFHGVGPDLGEANYDWRNPVAEVVVA 199          
BLAST of mRNA_E-fasciculatus_F_contig1012.128.1 vs. uniprot
Match: A0A2K2H8D6_9DELT (Spondin domain-containing protein n=1 Tax=Geothermobacter hydrogeniphilus TaxID=1969733 RepID=A0A2K2H8D6_9DELT)

HSP 1 Score: 126 bits (316), Expect = 7.870e-30
Identity = 78/227 (34.36%), Postives = 116/227 (51.10%), Query Frame = 3
Query:  135 KMGKFAFGLALAFMLSLTSGGKTGGSRMKTYKVRVTNLTFKQDFSPPMIVVHEKGSKPLFSHGVRARHAVKLMAEEGINRKIQEIATNEAGFCGFAVAKGPLLPGKTWHGEINFNAKKCKDPVYSVVAKLDNTNDAFMGIAGSKFPKDECPSKHFPPAFDAGTEKNNERCNCMPGRACPESTRNQREVHTRGSEGFIHVHRGFQGVGDLSKEDYGWQNPVAEVVVSK 815
            K  +   G+ +A +LSL + G       K Y+V +TNLT KQ  +PP+++ H++G + +F  G  A   +  +AE G  + +  +          AVA GP+LPG +   ++    K  +    SVV  L  TNDAF  + G +   D   +     A+DAG+E N E+C  +PG  C    R      T G+EGFIHVH G  G+GDL++    W+NPV  V + K
Sbjct:    2 KNSRMLTGVCVAILLSLVTSGLALADGGKMYQVTITNLTQKQVITPPLLISHKRGFE-VFRIGQAASDELVALAEGGDTQPLAAVLGTRDDVLDLAVAGGPILPGTSTTMQVRTRGKFNR---LSVVGMLATTNDAFFALQGVRGRSDRQIALTAV-AYDAGSEANTEQCAHIPGPPCGSQVR-----MTTGAEGFIHVHNGIHGIGDLNRAAMDWRNPVVRVTIEK 218          
BLAST of mRNA_E-fasciculatus_F_contig1012.128.1 vs. uniprot
Match: A0A433PQD1_9FUNG (Spondin domain-containing protein n=1 Tax=Endogone sp. FLAS-F59071 TaxID=2340872 RepID=A0A433PQD1_9FUNG)

HSP 1 Score: 120 bits (302), Expect = 8.380e-28
Identity = 86/205 (41.95%), Postives = 114/205 (55.61%), Query Frame = 3
Query:  219 KTYKVRVTNLTFKQDFSPPMIVVHEKGSKPLFSHGVRARHAVKLMAEEGINRKIQEIATNEA-GFCGFAVAKGPLLPGKTWHGEINFNAKKCKDPVYSVVAKLDNTNDAFMGIAGSKFPKDECPSKHFP-PAFDAGTEKNNERCNCMPGRACPESTRNQREVHTRG-SEGFIHVHRGFQGVGDLSKE----DYGWQNPVAEVVVS 812
            KT+ + V NL + Q FSP + V+HE  S  LF  G  A  A++ +AE G   K   +  +   G CG++VA G  LP  T+ G +  + K C +P  S+V  L  TNDAF GI  +  P     SK F  PA+DAGTE+NNE C  + G  CP S      + T G  EGF+HVHRG  G+ ++SK     DY W+NPVA + VS
Sbjct:   26 KTFDITVQNLAYLQPFSPVLAVIHEP-SIYLFQLGTPASAALRAVAEGGDPSKFVALFQDGLEGICGWSVAPGKTLPSTTYKGTVTIS-KPCTNPHISIVNMLGITNDAFTGI--NTIPLYGELSKRFEVPAYDAGTEENNEDCQYVFG--CPGSP----NLDTPGLGEGFVHVHRGVHGL-NVSKPGLSVDYDWRNPVAYITVS 219          
BLAST of mRNA_E-fasciculatus_F_contig1012.128.1 vs. uniprot
Match: A0A3B1BGY3_9ZZZZ (Spondin domain-containing protein n=1 Tax=hydrothermal vent metagenome TaxID=652676 RepID=A0A3B1BGY3_9ZZZZ)

HSP 1 Score: 116 bits (290), Expect = 3.360e-26
Identity = 75/222 (33.78%), Postives = 112/222 (50.45%), Query Frame = 3
Query:  162 ALAFMLSLTSG---GKTGGSRMKTYKVRVTNLTFKQDFSPPMIVVHEKGSKPLFSHGVRARHAVKLMAEEGINRKIQEIATNEAGFCGFAVAKGPLLPGKTWHGEINFNAKKCKDPVY-SVVAKLDNTNDAFMGIAGSKFPKDECPSKHFPPAFDAGTEKNNERCNCMPGRACPESTRNQREVHTRGSEGFIHVHRGFQGVGDLSKEDYGWQNPVAEVVVSK 815
            ++ + LS+ S         S  K Y V +TN+T  Q F+P M+  H+KG   +F  G  A + +  +AE G N+ +Q+   N       A + G L PG++    +    K      Y SV + L  TNDAF+ I G + PK    S    P +DAG+E N+E C  +PG  C     +  +    G EGF+H+H G  GVGDL+   + W+NP A+VV+ +
Sbjct:    7 SMLYFLSIASAVLAAPVQASDTKMYDVTITNITRGQTFTPIMVATHKKGQY-IFKLGDPASNELATIAESGNNQPLQDALLNSGAAYDTASSTGLLAPGES----VTVRVKAKGSFKYTSVASMLIPTNDAFIAINGVRAPKGHHASMLVSPTYDAGSEMNDELCANIPGPHCGGEGISAGD----GGEGFVHIHAGIHGVGDLAPAIFDWRNPTAKVVIKR 219          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1012.128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3Z6_ECTSI2.710e-11775.11Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G405_ECTSI6.760e-11478.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G413_ECTSI3.170e-9874.51Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7G3Z4_ECTSI1.250e-9673.24Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
D7FIE5_ECTSI1.830e-5347.03Spondin domain-containing protein n=1 Tax=Ectocarp... [more]
D7G4K4_ECTSI2.200e-5346.96Spondin domain-containing protein n=3 Tax=Ectocarp... [more]
D7G4K3_ECTSI6.180e-4447.47Spondin domain-containing protein n=1 Tax=Ectocarp... [more]
A0A2K2H8D6_9DELT7.870e-3034.36Spondin domain-containing protein n=1 Tax=Geotherm... [more]
A0A433PQD1_9FUNG8.380e-2841.95Spondin domain-containing protein n=1 Tax=Endogone... [more]
A0A3B1BGY3_9ZZZZ3.360e-2633.78Spondin domain-containing protein n=1 Tax=hydrothe... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1012contigE-fasciculatus_F_contig1012:3509..7327 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score192.2
Seed ortholog evalue2.7e-46
Seed eggNOG ortholog2880.D7FIE5
EggNOG OGs28TMI@1,2S5Q9@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorysignal peptide
Exons7
Model size1541
Cds size684
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927513.5604324-UTR-E-fasciculatus_F_contig1012:3508..36341622927513.5604324-UTR-E-fasciculatus_F_contig1012:3508..3634Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1012 3509..3634 +
1695995573.0384793-UTR-E-fasciculatus_F_contig1012:3508..36341695995573.0384793-UTR-E-fasciculatus_F_contig1012:3508..3634Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1012 3509..3634 +
1622927513.5737734-UTR-E-fasciculatus_F_contig1012:4104..41151622927513.5737734-UTR-E-fasciculatus_F_contig1012:4104..4115Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1012 4105..4115 +
1695995573.0589375-UTR-E-fasciculatus_F_contig1012:4104..41151695995573.0589375-UTR-E-fasciculatus_F_contig1012:4104..4115Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1012 4105..4115 +
1622927513.6510298-UTR-E-fasciculatus_F_contig1012:6607..73271622927513.6510298-UTR-E-fasciculatus_F_contig1012:6607..7327Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1012 6608..7327 +
1695995573.121453-UTR-E-fasciculatus_F_contig1012:6607..73271695995573.121453-UTR-E-fasciculatus_F_contig1012:6607..7327Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1012 6608..7327 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927513.5850859-CDS-E-fasciculatus_F_contig1012:4115..42081622927513.5850859-CDS-E-fasciculatus_F_contig1012:4115..4208Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1012 4116..4208 +
1695995573.0685508-CDS-E-fasciculatus_F_contig1012:4115..42081695995573.0685508-CDS-E-fasciculatus_F_contig1012:4115..4208Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1012 4116..4208 +
1622927513.5959666-CDS-E-fasciculatus_F_contig1012:4524..45901622927513.5959666-CDS-E-fasciculatus_F_contig1012:4524..4590Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1012 4525..4590 +
1695995573.0763283-CDS-E-fasciculatus_F_contig1012:4524..45901695995573.0763283-CDS-E-fasciculatus_F_contig1012:4524..4590Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1012 4525..4590 +
1622927513.6077325-CDS-E-fasciculatus_F_contig1012:4816..49031622927513.6077325-CDS-E-fasciculatus_F_contig1012:4816..4903Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1012 4817..4903 +
1695995573.0842342-CDS-E-fasciculatus_F_contig1012:4816..49031695995573.0842342-CDS-E-fasciculatus_F_contig1012:4816..4903Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1012 4817..4903 +
1622927513.6203957-CDS-E-fasciculatus_F_contig1012:5216..53581622927513.6203957-CDS-E-fasciculatus_F_contig1012:5216..5358Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1012 5217..5358 +
1695995573.0935626-CDS-E-fasciculatus_F_contig1012:5216..53581695995573.0935626-CDS-E-fasciculatus_F_contig1012:5216..5358Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1012 5217..5358 +
1622927513.6312416-CDS-E-fasciculatus_F_contig1012:5793..58861622927513.6312416-CDS-E-fasciculatus_F_contig1012:5793..5886Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1012 5794..5886 +
1695995573.1030679-CDS-E-fasciculatus_F_contig1012:5793..58861695995573.1030679-CDS-E-fasciculatus_F_contig1012:5793..5886Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1012 5794..5886 +
1622927513.6410804-CDS-E-fasciculatus_F_contig1012:6404..66071622927513.6410804-CDS-E-fasciculatus_F_contig1012:6404..6607Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1012 6405..6607 +
1695995573.1122947-CDS-E-fasciculatus_F_contig1012:6404..66071695995573.1122947-CDS-E-fasciculatus_F_contig1012:6404..6607Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1012 6405..6607 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1012.128.1prot_E-fasciculatus_F_contig1012.128.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1012 4116..6607 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1012.128.1

>prot_E-fasciculatus_F_contig1012.128.1 ID=prot_E-fasciculatus_F_contig1012.128.1|Name=mRNA_E-fasciculatus_F_contig1012.128.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=228bp
MGKFAFGLALAFMLSLTSGGKTGGSRMKTYKVRVTNLTFKQDFSPPMIVV
HEKGSKPLFSHGVRARHAVKLMAEEGINRKIQEIATNEAGFCGFAVAKGP
LLPGKTWHGEINFNAKKCKDPVYSVVAKLDNTNDAFMGIAGSKFPKDECP
SKHFPPAFDAGTEKNNERCNCMPGRACPESTRNQREVHTRGSEGFIHVHR
GFQGVGDLSKEDYGWQNPVAEVVVSKA*
back to top

mRNA from alignment at E-fasciculatus_F_contig1012:3509..7327+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1012.128.1 ID=mRNA_E-fasciculatus_F_contig1012.128.1|Name=mRNA_E-fasciculatus_F_contig1012.128.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3819bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1012:3509..7327+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTCGAACCCTCGCCCTCCCCCGCTTGTCACAAACAACAGAGACTCAACAT TACATCTCAACAGCCAAGCCTAATCACCGTTCGGCACCAGACCCAACTCA GGCGGAACATCACGCCAACGGCAAAGGTAAGGCGCGTGGTACGACGTATG GACACGTGTTGAGTATCCAGTTCGAACCGCTCCGACGGTGTACGAGTGGT TCGCAAGTCAGCCAGAGACAGCAGTGCAATCGACACCAGGAGTAGTCCAT TTTCGCTCGCCGAAGGCAGTGAGTGAGGGTTGTGTCGCTTCCAACCTGTC CACATACAACAATGTCTCCTGACCCAGGTGGTGCGGACGTGAGCATCCAT CAGCTCGTAAGACACTTGCCGATATGTGTACACGTACAAGCTGAAAACAG CGTTTTTCGGCTGAACACAACTTTTGAACGTTGGTTTGCACGTTCTGGCT CGACAAGAAGACCCGCATGCACAGTGAACGACGTGGAATACACCAATTTG AGAGGGATACGAGTCTGTCCCCACCTCCTGCCTCACTCACCTGCCTCGCT TTGTTTCGTTTGTTCCTTCATTGTGTCGACCATATCGCACCTATAGTCAA CAGGAAGATGGGTAAGTTTGCGTTCGGTCTCGCTCTGGCATTCATGCTCT CCCTCACCAGCGGTGGCAAGACGGGCGGCAGCCGCATGAAGACATACAAG GCGAGCTGTCATGGTCATGTTGTGTGTGAGGAAGACAGAGGAGGCCAATC ACCGTATAGTACGTCGAGCTGCTCAGAGAGTCGAACCATGGTGTACAATA GTCTCCCGGGTCCACAAACTATGGCAGCAACATGAAGAGGCAAAACAATA CTTCCGTGAACAAGCGCTGTCGACAGCCGTGCCGGTAGCTGTCCCCGCAA CCCGTATAGCTTGGTCATGTTTGCACCTCCCGTACTGTTCGGTCATGTCT GTTCCCAGCCAACGTTCTTGTCCGCCCCGCCGCCCTCTCCAAACACCGCC CGTCAACATCGTTCAGGTTCGAGTGACGAACTTGACTTTCAAGCAGGACT TCTCGCCCCCCATGATCGTGGTGCATGAAAAGGTTGGTGCCCATGTCCTG AACGCCATGGACCTGTTCTTCGTGTGGCTCGAAGCGCTTCCCGATCAGTT GACCAGTCAAGTGATCGTGTGTGGGGGGAACAAATGAGCTGTCTCGGAAT GTTGTGCCCCACCTCCTGTCAACGAATCATGAATGCTTCACGTGACAGCC CCCGCAACGGCGCGACTGTTTTCGTTTCTCGTACCCGTTCTCCCTCTTTG CTCACCAGGGTAGCAAGCCTCTTTTCTCCCATGGTGTGAGGGCGAGACAC GCAGTCAAGCTAATGGCAGAAGAGGGCATCAACCGGAAGATACAGGTATG TCGGTGGTTGGTTTCACAAGGAATTCATCGCGTCGTGTCAACCGCCAATT GCCGTGGTAGTCCACATGATTGGGTCCTCGCTCTTACCTGCGTACCTCTC ATTCTTTCAGACAGCGTCAGTCGAGATTTGTTTCCGTGTTCTTGCCCGGG CCGGACTCAATATCGAGCGCGGGACGGTATTATCACCGGAGCTACTCTGA CACTTGAAATGACTGTGCCCGCTATGAAACCAACCTATGAAACGCAACAC CCATACACGTTCCACCGTTTCTACGCCCCTCTCAAAACGACGGGTGATGC ACGCGCAGGAAATCGCAACGAACGAGGCCGGCTTCTGTGGCTTTGCCGTT GCCAAGGGCCCCCTCTTGCCCGGGAAAACATGGCATGGCGAAATCAACTT CAACGCGAAGAAGTGCAAGGACCCCGTCTACTCGGTGGTGGCCAAGCTCG GTAAGGTTTCGAAGCACGAAAGGCGAAGGATGTACCCACCGTTAGACTAT AGCTGATTCACAAAAGTGAATTTCAATCCATATGAAAAGCCTGCGGGCGT GTGAATGTTGCGAATGAGGCGCAACACTGTCCAGTGGAATGTGGCCTTTG CTCCCGAGTGACTTGTGCATTTCAGTGGCACGAGACTGTTTACCTGTGGT TCGTCACGCCATACTCGTCAAATCTGACCGAACACCACCTCATCCCGCTT GGTGGGTCAAGTCTACTACACAGGTACGCCTTCACCCTGTCCGATGATCG CGCTGCACTCATTGATACATCTCCTCCCCCCCGGCCGTGGTCTGCGACAT GGCGTGTACTTAAACCTGTGTTCGATGAAGCCGATCACGAAGCCCACCTT CCGATCTCCGCGACTGTTATTTGCTTTTTGCACAGACAACACCAACGACG CCTTCATGGGAATCGCTGGTTCCAAATTCCCCAAGGATGAGTGCCCGTCG AAGCACTTTCCTCCCGCCTTTGATGCCGGTAAGGAACAGGAGAATTTCAC ACAAACGCAGTTGACATGAACTGATTGCGCGTGCAATTCCAAAGCATGGG TTCTTGTCGAAGGCATACCCCCATACGTGCCGCGCTCGCCAAGTAAAATA CTCCACAGTTGCAACCGACGGCATTGTCTCTTCCGCTGAATGTACGCATT TGATGCTGTGTTGTTCGCAACTTTGTTTTTTGTGATCACATCACGTTCTG CGTATAACTGTTGTGCACATGGATCCTTCATACGTGTCCCTTGTCGCGAT CTGCTCGCCGACGCGCCCCGGCCCGAATTGCTGAGCGTTTTCTCTGGCGA GCTTGCATCATTTCTTCACTCCAATCGCAGCCAAGCAGTCGAGATTCCTT GTCGCCAATGCTGCCAGTCGTAGCCATGCTGCAGTGTCTATGACACCTCA TCATGCCACAACAATGCACACGAGCTGGCGTCGACGACGTGCGACCACAG CATAGAGCCCATTCACAACACCTCGTCGCCCCGTCCCCTCCCAAAGGCAC CGAGAAGAACAACGAGAGGTGTAACTGCATGCCGGGCCGGGCATGTCCCG AAAGCACCAGGAATCAACGGGAAGTTCACACAAGAGGTTCAGAGGGCTTC ATCCACGTGCACCGAGGCTTCCAAGGCGTGGGAGATCTCTCCAAAGAGGA CTATGGCTGGCAAAACCCGGTGGCCGAGGTTGTGGTCTCTAAGGCCTGAG GCGAAGAAGGCAGCGGAACAGTGCTTCAACCACTACTGTTGTTACAGCCT GTCGGGGCAGCGTAGAGTGCGGCGTCGCGTGATCGCACAGTCGACGAATG GGCGAGGTTAGGCCTCAGACGTACGGTGGTGGTCCCCTTGTACTCTGGCT GTCGTTTCCTTCATGGCAAGTGCTGCCCGTCGTTGATTCGGAGGAAGTGG TCGAACCGATGGGTAGAGCATTCGCGTATGACGTGTCGCACGACATTGCC CGTTCGTGCCGAACGCGGGGTTGGAGGGAAGGTGTGGTTGACTTTTCAAG GATGAGTTTTCTCCTCAATGTGGCGTTGGCTTGTGCGTAGACAGTGCTGC TGCGATAGGGCAGTTGCGTTTGTATGTTGGGCGTTGCGGACGAAGTCCTG TGGTCGTTGGAGGGTTCGTCGTTCCGCAGCTGCCGTGTTGGGTGGTGGAG TATGCATAGGAGGAATGAAAGCGAGTCGCTGTGAATTTCTAGGAAAACCG TACTACACTAGACGTTTTGTAGCCGTAGCCCCTTGCACCTACCATCAATC AGCACCTTTGGCCTGAACCTGACTGCGTTTACCCCGCGCAAAGAAAGCCA AATACTGTAGTGGTCGATATGATGCTGCACTCTACGCGTCTATGTAGGCG AGTAGAAATTGCTTGTGTCCACGCTTTCGATACTGAATGCTAGTGTTATG GAAAGAAAATACACACACA
back to top

Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1012:3509..7327+

>mRNA_E-fasciculatus_F_contig1012.128.1 ID=mRNA_E-fasciculatus_F_contig1012.128.1|Name=mRNA_E-fasciculatus_F_contig1012.128.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1368bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1012:3509..7327+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGTAAGTTTGCGTTCGGTCTCGCTCTGGCATTCATGCTCTCCCTCAC
CAGCGGTGGCAAGACGGGCGGCAGCCGCATGAAGACATACAAGATGGGTA
AGTTTGCGTTCGGTCTCGCTCTGGCATTCATGCTCTCCCTCACCAGCGGT
GGCAAGACGGGCGGCAGCCGCATGAAGACATACAAGGTTCGAGTGACGAA
CTTGACTTTCAAGCAGGACTTCTCGCCCCCCATGATCGTGGTGCATGAAA
AGGTTCGAGTGACGAACTTGACTTTCAAGCAGGACTTCTCGCCCCCCATG
ATCGTGGTGCATGAAAAGGGTAGCAAGCCTCTTTTCTCCCATGGTGTGAG
GGCGAGACACGCAGTCAAGCTAATGGCAGAAGAGGGCATCAACCGGAAGA
TACAGGGTAGCAAGCCTCTTTTCTCCCATGGTGTGAGGGCGAGACACGCA
GTCAAGCTAATGGCAGAAGAGGGCATCAACCGGAAGATACAGGAAATCGC
AACGAACGAGGCCGGCTTCTGTGGCTTTGCCGTTGCCAAGGGCCCCCTCT
TGCCCGGGAAAACATGGCATGGCGAAATCAACTTCAACGCGAAGAAGTGC
AAGGACCCCGTCTACTCGGTGGTGGCCAAGCTCGGAAATCGCAACGAACG
AGGCCGGCTTCTGTGGCTTTGCCGTTGCCAAGGGCCCCCTCTTGCCCGGG
AAAACATGGCATGGCGAAATCAACTTCAACGCGAAGAAGTGCAAGGACCC
CGTCTACTCGGTGGTGGCCAAGCTCGACAACACCAACGACGCCTTCATGG
GAATCGCTGGTTCCAAATTCCCCAAGGATGAGTGCCCGTCGAAGCACTTT
CCTCCCGCCTTTGATGCCGACAACACCAACGACGCCTTCATGGGAATCGC
TGGTTCCAAATTCCCCAAGGATGAGTGCCCGTCGAAGCACTTTCCTCCCG
CCTTTGATGCCGGCACCGAGAAGAACAACGAGAGGTGTAACTGCATGCCG
GGCCGGGCATGTCCCGAAAGCACCAGGAATCAACGGGAAGTTCACACAAG
AGGTTCAGAGGGCTTCATCCACGTGCACCGAGGCTTCCAAGGCGTGGGAG
ATCTCTCCAAAGAGGACTATGGCTGGCAAAACCCGGTGGCCGAGGTTGTG
GTCTCTAAGGCCTGAGCACCGAGAAGAACAACGAGAGGTGTAACTGCATG
CCGGGCCGGGCATGTCCCGAAAGCACCAGGAATCAACGGGAAGTTCACAC
AAGAGGTTCAGAGGGCTTCATCCACGTGCACCGAGGCTTCCAAGGCGTGG
GAGATCTCTCCAAAGAGGACTATGGCTGGCAAAACCCGGTGGCCGAGGTT
GTGGTCTCTAAGGCCTGA
back to top