mRNA_E-fasciculatus_F_contig1012.129.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1012.129.1
Unique NamemRNA_E-fasciculatus_F_contig1012.129.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1012.129.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1012contigE-fasciculatus_F_contig1012:11373..12654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size294
Cds size294
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1012.129.1prot_E-fasciculatus_F_contig1012.129.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1012 11373..12654 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927513.5001535-CDS-E-fasciculatus_F_contig1012:11372..114291622927513.5001535-CDS-E-fasciculatus_F_contig1012:11372..11429Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1012 11373..11429 -
1695995573.0082748-CDS-E-fasciculatus_F_contig1012:11372..114291695995573.0082748-CDS-E-fasciculatus_F_contig1012:11372..11429Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1012 11373..11429 -
1622927513.5123065-CDS-E-fasciculatus_F_contig1012:11723..117771622927513.5123065-CDS-E-fasciculatus_F_contig1012:11723..11777Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1012 11724..11777 -
1695995573.0180097-CDS-E-fasciculatus_F_contig1012:11723..117771695995573.0180097-CDS-E-fasciculatus_F_contig1012:11723..11777Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1012 11724..11777 -
1622927513.5237248-CDS-E-fasciculatus_F_contig1012:12471..126541622927513.5237248-CDS-E-fasciculatus_F_contig1012:12471..12654Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1012 12472..12654 -
1695995573.0279508-CDS-E-fasciculatus_F_contig1012:12471..126541695995573.0279508-CDS-E-fasciculatus_F_contig1012:12471..12654Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1012 12472..12654 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1012.129.1

>prot_E-fasciculatus_F_contig1012.129.1 ID=prot_E-fasciculatus_F_contig1012.129.1|Name=mRNA_E-fasciculatus_F_contig1012.129.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=98bp
RLSLAYTLEEQGEYLATAGNFSASCSAYSEASEVFRQCSVILPSEPESLL
RLWVTAQRAYEVGSNRQPPGTEALETCVQLCVRVQKPESAAGENTGPG
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mRNA from alignment at E-fasciculatus_F_contig1012:11373..12654-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1012.129.1 ID=mRNA_E-fasciculatus_F_contig1012.129.1|Name=mRNA_E-fasciculatus_F_contig1012.129.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1282bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1012:11373..12654- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGCTTAGCCTTGCGTACACTCTGGAGGAACAGGGAGAATACCTGGCGAC
AGCGGGGAACTTCTCGGCAAGCTGCTCGGCGTATTCAGAAGCCTCGGAGG
TATTTCGGCAATGCTCCGTTATTCTGCCTTCGGAGCCAGAGTCTCTCCTG
CGGCTGTGGGTCACCGCACAACGGGCATACGAGGTAAAACTCTTAGGTGC
TGTGGGGGGCAAGTGGCTCCAACCGCAGGACAGCATTCCCAAGCTATCTG
GCAGGAAAACGTGTTAGTCTGATGCCTAGCCCGCGGTTTGAAGGTCGGCG
AACGTTTCGGAGAGTTAATCTGGCACCCCCACTGGGTACGAAAAGAAGCT
CAGACTTTTGGTGTACACGCTAAACGTTTTTTCGGGAATCGGTAGGGAGT
CAGCAAGAGGCTGATACACGGCGCCATAATCCGATAAATCACATATGTTC
GCAACTGCATAATAATCTCCTCCATTCCACACGTGCACCTAAATTTCAAC
TGGCTTGACGCGACGGCGAAGACCATTGGGTTGTTTCCACGCTAACCGCA
CCCCTGTAAAACATTGTACCCAGGATGAACCCAAGCGGTGCGAACATGAT
CATTTCGCAGTGGTTAAGAAAGTGCTATGCAAAGGTTAAGAACATTGACA
TCACCGCGGGTATTGTAGTGGGGATCGAGGTAGAACACGATGACATCATG
TACCGTCGGTCGTTATCTCCGCTTCGTTTCCTCTCGGGAGAGGATCCGCT
CGGGACAAGGGTAAGTCGTCGGTTCAATACTTAGGTTGGCCTACGTTTCG
TCCACTCCTCGCTCAATCTCCTTCGCCCACGTAGCCATGTTGAGCATTGT
TTGCCTCGTCCACTACACTACTTTCAGGTGGGGTCCAACAGACAGCCGCC
TGGAACTGAGGCGCTCGAAACCTGCGTGCAGGTGAGAAACTACTCATCGG
TTGATCAAGCTGGCACGAGTAAGTTAGTTCTGGATAGGATGGATGTTTTC
CTATATCACCCTTAGACGGAAGTTCCTTGAGAAGCGCTGCACGTTTGCTA
TCGATGTGCCTAGAATCGCCTGTGTCTAGAGATGTTTGAGGAATGTCACT
GACAGGGCATTGACATGAGGACCCCATCTGTGCCCCAAGAGCGAGAAATA
CGGGCTAGCCAAGAACACGCCACCCACAGGCCGTGTCAAAAACAACAACC
CTTGCCGTGGAATCACACTGTACAGCTTTGTGTCAGGGTGCAAAAACCGG
AAAGCGCTGCGGGAGAAAATACTGGTCCTGGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1012:11373..12654-

>mRNA_E-fasciculatus_F_contig1012.129.1 ID=mRNA_E-fasciculatus_F_contig1012.129.1|Name=mRNA_E-fasciculatus_F_contig1012.129.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=588bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1012:11373..12654- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGCTTAGCCTTGCGTACACTCTGGAGGAACAGGGAGAATACCTGGCGAC
AGCGGGGAACTTCTCGGCAAGCTGCTCGGCGTATTCAGAAGCCTCGGAGG
TATTTCGGCAATGCTCCGTTATTCTGCCTTCGGAGCCAGAGTCTCTCCTG
CGGCTGTGGGTCACCGCACAACGGGCATACGAGAGGCTTAGCCTTGCGTA
CACTCTGGAGGAACAGGGAGAATACCTGGCGACAGCGGGGAACTTCTCGG
CAAGCTGCTCGGCGTATTCAGAAGCCTCGGAGGTATTTCGGCAATGCTCC
GTTATTCTGCCTTCGGAGCCAGAGTCTCTCCTGCGGCTGTGGGTCACCGC
ACAACGGGCATACGAGGTGGGGTCCAACAGACAGCCGCCTGGAACTGAGG
CGCTCGAAACCTGCGTGCAGGTGGGGTCCAACAGACAGCCGCCTGGAACT
GAGGCGCTCGAAACCTGCGTGCAGCTTTGTGTCAGGGTGCAAAAACCGGA
AAGCGCTGCGGGAGAAAATACTGGTCCTGGCCTTTGTGTCAGGGTGCAAA
AACCGGAAAGCGCTGCGGGAGAAAATACTGGTCCTGGC
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