mRNA_E-fasciculatus_F_contig10117.125.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10117.125.1
Unique NamemRNA_E-fasciculatus_F_contig10117.125.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10117.125.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10117contigE-fasciculatus_F_contig10117:2837..3615 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size181
Cds size180
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927513.267284-CDS-E-fasciculatus_F_contig10117:2836..29361622927513.267284-CDS-E-fasciculatus_F_contig10117:2836..2936Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10117 2837..2936 -
1695995572.8703086-CDS-E-fasciculatus_F_contig10117:2836..29361695995572.8703086-CDS-E-fasciculatus_F_contig10117:2836..2936Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10117 2837..2936 -
1622927513.2814274-CDS-E-fasciculatus_F_contig10117:3535..36151622927513.2814274-CDS-E-fasciculatus_F_contig10117:3535..3615Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10117 3536..3615 -
1695995572.882115-CDS-E-fasciculatus_F_contig10117:3535..36151695995572.882115-CDS-E-fasciculatus_F_contig10117:3535..3615Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10117 3536..3615 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10117.125.1prot_E-fasciculatus_F_contig10117.125.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10117 2837..3615 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10117.125.1

>prot_E-fasciculatus_F_contig10117.125.1 ID=prot_E-fasciculatus_F_contig10117.125.1|Name=mRNA_E-fasciculatus_F_contig10117.125.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=60bp
SNCGLTDDDIPDLAGCIDHAGGAIKELSLNNNRLTAAIFSWLDDNGQPLL
GGMRDLERL*
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mRNA from alignment at E-fasciculatus_F_contig10117:2837..3615-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10117.125.1 ID=mRNA_E-fasciculatus_F_contig10117.125.1|Name=mRNA_E-fasciculatus_F_contig10117.125.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=779bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10117:2837..3615- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCCAACTGCGGACTGACGGACGACGATATCCCGGATCTTGCTGGCTGCAT
CGATCATGCCGGAGGAGCCATCAAAGAACTGTGAGTCTATGCGCAACGTC
TGTATGCTTTACACATGCGGTGTTTGAAGCGAAATTCACCAAAGGGGTTG
CAAAGGTATGGCAGCAGAGCAGCTCACCGTCTCGGCGAAGATCTTGTACG
ACAGTGTGCAGATATCGAGAATGCGCACTTTCCCTTCCCAGGCCCCAAGC
ATTACCTGGTCCACTTCCTTGTTCTCTCCTGGACATTTTTTAACGTCTCT
CCTGGACATTTTGTCACTAGATACGTGACCTCTTACGCGACGAGCGTGGT
CGAGAACAACAGAAGGCTCTACCATATTTCTTTCGGTGTACGGCCATGGT
AGTTCCTGTAGCGGTTGCAACCATATGGTGGTCTGCCGAGGACGAGCTTG
TACTTCATATGTATCGAGCGGACTTACAGGGTCACTAAGTTTTCGTATAG
CGCATGCCATGCTTTACAGCGTATTGACTGTCGCGAGTCTGACGGTATGC
CAGCTAGTGCTTCTTTTGTCATTTGGAGGACGCCGATCCTGCTTATTTGA
GACCTCCGCGATCATGACAACGGTTCCACATGTACCGTTTCGCCTTTTTT
GCCGTTTCGTTGACGCTATTACCGCCAAGGTCCCTAAACAACAACCGCCT
CACGGCCGCTATCTTCTCGTGGCTGGATGACAACGGCCAGCCTCTTCTAG
GCGGGATGCGCGACCTAGAACGCCTGTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10117:2837..3615-

>mRNA_E-fasciculatus_F_contig10117.125.1 ID=mRNA_E-fasciculatus_F_contig10117.125.1|Name=mRNA_E-fasciculatus_F_contig10117.125.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=360bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10117:2837..3615- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCCAACTGCGGACTGACGGACGACGATATCCCGGATCTTGCTGGCTGCAT
CGATCATGCCGGAGGAGCCATCAAAGAACTTCCAACTGCGGACTGACGGA
CGACGATATCCCGGATCTTGCTGGCTGCATCGATCATGCCGGAGGAGCCA
TCAAAGAACTGTCCCTAAACAACAACCGCCTCACGGCCGCTATCTTCTCG
TGGCTGGATGACAACGGCCAGCCTCTTCTAGGCGGGATGCGCGACCTAGA
ACGCCTGTGAGTCCCTAAACAACAACCGCCTCACGGCCGCTATCTTCTCG
TGGCTGGATGACAACGGCCAGCCTCTTCTAGGCGGGATGCGCGACCTAGA
ACGCCTGTGA
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