mRNA_E-fasciculatus_F_contig1010.117.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1010.117.1
Unique NamemRNA_E-fasciculatus_F_contig1010.117.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1010.117.1 vs. uniprot
Match: D8LIG3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIG3_ECTSI)

HSP 1 Score: 541 bits (1393), Expect = 5.730e-190
Identity = 288/344 (83.72%), Postives = 299/344 (86.92%), Query Frame = 1 
Query:   64 ITATSMLCCLTCSLPGLSFVVSPPTRLRRRWSALPKARRLTTHASLNQFGTGRPRGAARARGGGFFLRQRAGITSRRRIHRWDWAVRSKDSPRGVSSSRDAASDQEEDDVLSFEEFEKEFLSAAPSRDGWNRGTDGAVDSAGAATGINWRLLVEDILVQPLFLGVFAVLAKPALCRQVKSSLSVTIHGAGLGILGSLPLFAYGLFLETRRDWAWVRTAQATTERAVLTLFGSKRQVTKVAAVSIPLSMLVGASEECGFRGFLPLILATHTSLPTAAIVVLSGIFCGMLHAVSLAYFVNATLNGIFFHCLLLSTGNIFVPMVAHAVHNSFALVHCHFKTSGEQLA 1095
            ++A SMLCCLTCSLPGLSFVVSPP R                HAS N FGT R R AARARGGG+FLRQRAGI SRRRI RWDWAVRSKD PRGVSSSRDAASDQE DDVLSFEEFEK  LSAAPSRDGW R  DGAVDSAGA TGINWRLLVEDILVQPLF G+FAVLAKPA+  QVKSSLSVT+HGA +GILGSLPLFAYGLFLETRRDW WVR AQATTERAVL LFGSKRQVTKVAAVSIPLSMLV ASEECGFRG LPLILATHTSLPTAAIVVLSGIFCG+LHAVSLAYF+NATLNGIFFHCLLLSTGNIFVPMVAHAVHN+FALVHCH KTSG + A
Sbjct:    1 MSAASMLCCLTCSLPGLSFVVSPPIRFN-------------PHASPNHFGTRRQRRAARARGGGYFLRQRAGICSRRRIRRWDWAVRSKDLPRGVSSSRDAASDQE-DDVLSFEEFEKALLSAAPSRDGWYRSADGAVDSAGARTGINWRLLVEDILVQPLFFGIFAVLAKPAMRGQVKSSLSVTLHGACVGILGSLPLFAYGLFLETRRDWGWVRKAQATTERAVLKLFGSKRQVTKVAAVSIPLSMLVSASEECGFRGLLPLILATHTSLPTAAIVVLSGIFCGVLHAVSLAYFLNATLNGIFFHCLLLSTGNIFVPMVAHAVHNAFALVHCHIKTSGGEPA 330
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1010.117.1 vs. uniprot
Match: D8LIG1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIG1_ECTSI)

HSP 1 Score: 195 bits (496), Expect = 2.840e-54
Identity = 109/207 (52.66%), Postives = 132/207 (63.77%), Query Frame = 1 
Query:  460 GTDGAVDSAGAATGINWRLLVEDILVQPLFLGVFAVLAKPALCRQVKSSLSVTIHGAGLGILGSLPLFAYGLFLETRRDWAWVRTAQATTERAVLTLFGSKRQVTKVAAVSIPLSMLVGASEECGFRGFLPLILATHTSLPTAAIVVLSGIFCGMLHAVSLAYFVNATLNGIFFHCLLLSTGNIFVPMVAHAVHNSFALVHCHFKTS 1080
            G  GAVD      GI+W  LV     Q  F+G+F ++A  A+  QV S+  V+     LG+ G +PL  YGL L+   +W WVR     T    L LFGSKRQ+ KV  V IPLSMLVG  EEC FRGFLPLILA  T LP AAIV LS    G LHA ++AYF+ ATL+G+FFH L LSTGNIFVP+VAHAV+++ ALV  H K +
Sbjct:  170 GRGGAVD---VPPGISWVALVAVAATQLAFVGLFVLVASAAMREQVVSACMVSPAATALGVAGMVPLLGYGLLLDRWTEWEWVRKIDEATSEVALQLFGSKRQLGKVTGVVIPLSMLVGLCEECAFRGFLPLILAAKTGLPMAAIVGLSATIFGSLHAATVAYFLTATLSGMFFHGLFLSTGNIFVPIVAHAVYDAIALVRYHVKVT 373
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1010.117.1 vs. uniprot
Match: A0A6H5JG43_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG43_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 1.710e-49
Identity = 85/93 (91.40%), Postives = 89/93 (95.70%), Query Frame = 1 
Query:  805 MLVGASEECGFRGFLPLILATHTSLPTAAIVVLSGIFCGMLHAVSLAYFVNATLNGIFFHCLLLSTGNIFVPMVAHAVHNSFALVHCHFKTSG 1083
            M+V  SEECGFRGFLPLILATHTSLPTAAIVVLSGIFCG+LHAVSLAYF+NATLNGIFFHCLLLSTGNI VPMVAHAVHN+FALVHCH KTSG
Sbjct:    1 MIVSVSEECGFRGFLPLILATHTSLPTAAIVVLSGIFCGVLHAVSLAYFLNATLNGIFFHCLLLSTGNILVPMVAHAVHNAFALVHCHLKTSG 93
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1010.117.1 vs. uniprot
Match: A0A6H5JEH8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEH8_9PHAE)

HSP 1 Score: 172 bits (437), Expect = 4.410e-46
Identity = 108/256 (42.19%), Postives = 153/256 (59.77%), Query Frame = 1 
Query:  388 DVLSFEEFEKEFLSAA---------PSRDGWNRGT-DGAVDSAGAAT---------------GINWRLLVEDILVQPLFLGVFAVLAKPALCRQVKSSLSVTIHGAGLGILGSLPLFAYGLFLETRRDWAWVRTAQ--ATTERAVLTLFGSKRQVTKVAAVSIPLSMLVGASEECGFRGFLPLILATHTSLPTAAIVVLSGIFCGMLHAVSLAYFVNATLNGIFFHCLLLSTGNIFVPMVAHAVHNSFALVHCHFK 1074
            + LS EEFE    SAA         P+ DG   G+ +GA D++ A T               GINW  ++  ++ Q LFLG FA LA PA+  Q++SS  ++  G GLG  G++P+F YGL+L T+ +W W++  +  A  +   L LFG +RQV +VA VS+PL+MLV   EEC +RG +PL+L   T LP AA+V +S +FCG  HA +L   ++A + G++ HCLLLST +I VP+VAHAV ++   V  H K
Sbjct:   83 EALSREEFEA--WSAAXXXXXXXXXPTGDGRRTGSANGASDASDATTSVCVEEVYSSRASPAGINWTSILLSVVDQVLFLGFFAWLATPAIREQLRSSFVLSFPGIGLGAAGAVPMFVYGLYLGTQ-NWPWLKRHEQKAAADIKDLNLFGRRRQVARVAVVSVPLAMLVALCEECVYRGLVPLLLVAKTGLPVAAVVGISAVFCGARHAGTLGSAIDAAVLGMYVHCLLLSTRSILVPIVAHAVFDAILFVVGHLK 335
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1010.117.1 vs. uniprot
Match: A0A835ZC13_9STRA (CAAX protease self-immunity-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZC13_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 1.300e-14
Identity = 62/189 (32.80%), Postives = 93/189 (49.21%), Query Frame = 1 
Query:  529 ILVQPLFLGVFAVLAKPALCRQVKSSLSVTIHGAGLGILGSLPLFAYGLFLETRRDWAWVRTAQATTERAVLTLFGSKRQVTKVAAVSIPLSMLVGASEECGFRGFLPLILATHTSLPTAAIVVLSGIFCGMLHAVSLAYFVNATLNGIFFHCLLLSTGNIFVPMVAHAVHNSFALVHCHFKTSGEQLA 1095
            +LV    L   A+    AL   + S++S+T    G G+LG+LP+      LE  + W WV+     T   ++TL G           ++ + +  G  EE  FRG L   L  + S  T A V  S +  G+LHAV+  Y V A + G +F  L L +GN+ VP+VAHAV++  A++    +  GE  A
Sbjct:    1 VLVSQWLLVPIALAIAKALSLDILSTVSITGMDIGYGVLGALPVAGVMALLEITQ-WGWVQRISERTRTFLITLLGKDGGGIFGLFFALGVGIAAGVGEELMFRGLLQGGLQRYLS--TEAAVAASAVVFGLLHAVTPMYAVCAGITGAYFSLLWLWSGNLVVPIVAHAVYDIGAMLLLSLQLRGESSA 186
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1010.117.1 vs. uniprot
Match: A0A7H4GRI0_9GAMM (CPBP family intramembrane metalloprotease n=1 Tax=Wenzhouxiangella sp. AB-CW3 TaxID=2771012 RepID=A0A7H4GRI0_9GAMM)

HSP 1 Score: 69.7 bits (169), Expect = 3.510e-10
Identity = 60/189 (31.75%), Postives = 97/189 (51.32%), Query Frame = 1 
Query:  544 LFLGVFAVLAKPALCRQVK----SSLSVTIHGAGLGILGSLPLFAYGLFLETRRDWAWVRTAQATTERAVLTLFGSKRQVTKVAAVSIPLSMLVGASEECGFRGF----LPLILATHTSLPTAAIVVLSGIFCGMLHAVSLAYFVNATLNGIFFHCLLLSTGNIFVPMVAHAVHNSFALVHCHFKTSGE 1086
            +F G   VLA  ALC        +S+  ++    L +  ++PL    LF+    +WAW R   A   + +  LF   R+  + + V +  + L G  EE  FRGF    L L+L    +L  AA++       G++HAV+ AYF+ ATL G +   + L+TGN+ VP++ HA+++  A+ +  FK + E
Sbjct:   10 IFQGGLVVLAV-ALCLLFGLTPWASMEWSLPALALAVTLTVPLLLPLLFMR-HLNWAWAREIHAVVNQLIKLLF---RRAPRGSVVLV--AALAGIGEELLFRGFIQDGLDLLLGPIPALLIAAVLF------GLVHAVTRAYFIIATLMGAYLGWIYLATGNLLVPILIHALYDWIAIRYYLFKLTTE 185
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1010.117.1 vs. uniprot
Match: A0A2E3A4H5_9BACT (Uncharacterized protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A2E3A4H5_9BACT)

HSP 1 Score: 67.4 bits (163), Expect = 3.650e-9
Identity = 57/183 (31.15%), Postives = 94/183 (51.37%), Query Frame = 1 
Query:  514 LLVEDILVQPLFLGVFAVLAKPALCRQVKSSLSVTIHGAGLGILGSLPLFAYGLFLETRRDWAWVRTAQATTERAVLTLFGSKRQVTKVAAVSIP------LSMLVGASEECGFRGFLPLILATHTSLPTAAIVVLSGIFCGMLHAVSLAYFVNATLNGIFFHCLLLSTGNIFVPMVAHAVHN 1044
            L++E +LV    L  +     P L     + +S    G   G+  SLP+ AY +F  +    A+ R   A  +R    ++   R++   A + +P      L M  G  EEC FRG L  ++   TS P A  ++L+G+  G+LHA++ AYF+ AT+  I+F  L+  TGN+  P++AH +++
Sbjct:   17 LILETVLVVIATLVSYLFFDTPLL-----NPISFDREGLLTGVAASLPMVAYFVFSLS----AFGRNL-APLKR----IYDLLRRMLARALIEMPTWQIVLLGMSAGIGEECLFRGVLQPVVEGWTSTPAA--ILLTGLIFGLLHALTPAYFILATILSIYFGFLVYYTGNLMTPILAHGLYD 183
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1010.117.1 vs. uniprot
Match: A0A5B9Q9G7_9BACT (CAAX amino terminal protease self-immunity n=1 Tax=Bythopirellula goksoeyrii TaxID=1400387 RepID=A0A5B9Q9G7_9BACT)

HSP 1 Score: 64.3 bits (155), Expect = 2.760e-8
Identity = 53/179 (29.61%), Postives = 85/179 (47.49%), Query Frame = 1 
Query:  550 LGVFAVLAKPALCRQVKSSLSVTIHGAGLGILGSLPLFAYGLFLETRRDWAWVRTAQATTERAVLTLFGSKRQVTKVAAVSIPLSMLVGASEECGFRGFLPLILATHTSLPTAAIVVLSGIFCGMLHAVSLAYFVNATLNGIFFHCLLLSTGNIFVPMVAHAVHNSFALVHCHFKTSGE 1086
            LG   VL        ++  LS T+     GI+ SLP+    L      DW  +   +   E  V  LF     +       + +S+  G  EE  FRG L  +  + T+L     V+L+ +  G+ HA+S AYF+ AT+ G++F  L  +  ++  P+VAHA ++  ALV+  ++  GE
Sbjct:   19 LGFLGVLVAWLGSISLQGRLSFTLDSVLRGIVASLPMILL-LLAAYEVDWKPLAKLRRNVEHVVRELFAGCGWME-----FLLVSLAAGLGEEILFRGALQPLFISWTTLWIG--VILTALLFGLAHAMSTAYFLAATVIGLYFGWLAWAYEDLVAPIVAHAFYDFVALVYVSYRARGE 189
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1010.117.1 vs. uniprot
Match: A0A5Q4GZ09_9GAMM (CPBP family intramembrane metalloprotease n=1 Tax=Wenzhouxiangella sp. TaxID=1979961 RepID=A0A5Q4GZ09_9GAMM)

HSP 1 Score: 62.8 bits (151), Expect = 9.160e-8
Identity = 50/167 (29.94%), Postives = 81/167 (48.50%), Query Frame = 1 
Query:  544 LFLGVFAVLAKPALCRQVKSSLSVTIHGAGLGILGSLPLFAYGLFLETRRDWAWVRTAQATTERAVLTLFGSKRQVTKVAAVSIPLSMLVGASEECGFRGFLPLILATHTSLPTAAIVVLSGIFCGMLHAVSLAYFVNATLNGIFFHCLLLSTGNIFVPMVAHAVHN 1044
            L L V AV+        +   +  T+      +LG+LPL   G +L  R  WAW+R  +   +  V  LF      T         ++L G  EE  FRG +   L+     P  A++  S +F G +HA++ AYFV AT+ G++   + L TGN+ +P++ H +++
Sbjct:   23 LGLAVLAVMLGWVFGLDLFGRIEFTLAALNWSVLGTLPLLLAGWWLF-RSSWAWMRELKRLVQEMVTLLFRDAPPGTVFLV-----ALLAGVGEELLFRGVVQGGLSGLIG-PWGALLAASLLF-GAMHALTRAYFVVATIMGLYLGLIYLWTGNLLIPILIHFLYD 181
[Close]
BLAST of mRNA_E-fasciculatus_F_contig1010.117.1 vs. uniprot
Match: UPI001963FA39 (CPBP family intramembrane metalloprotease n=1 Tax=Amphritea pacifica TaxID=2811233 RepID=UPI001963FA39)

HSP 1 Score: 62.4 bits (150), Expect = 1.260e-7
Identity = 46/149 (30.87%), Postives = 77/149 (51.68%), Query Frame = 1 
Query:  619 IHGAGL--GILGSLPLFAYGLFLETRRDWAWVRTAQATTERAVLTLFGSKRQVTKVAAVSIPLSMLVGASEECGFRGFLPLILATHTSLPTAAIVVLSGIFCGMLHAVSLAYFVNATLNGIFFHCLLLSTGNIFVPMVAHAVHNSFALV 1059
            + GAG+  G+L +LPL    L      D+  V      ++  +  LF     +T      I      G  EE  FRG +  +LATH +  +   V+++ +  G++H++SLAY ++ATL GI+   LLL   N+ VP++ H++++   LV
Sbjct:   45 LSGAGVIQGVLATLPLLLLVL-CAAALDFRPVERLFRLSQERISRLFRGTPLLTLALVAGI-----AGLGEEALFRGVIQTLLATHLNALSG--VLIAAVLFGLVHSLSLAYAISATLIGIYLGWLLLCFDNLLVPIMTHSLYDFIVLV 185
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1010.117.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
D8LIG3_ECTSI5.730e-19083.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LIG1_ECTSI2.840e-5452.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JG43_9PHAE1.710e-4991.40Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEH8_9PHAE4.410e-4642.19Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZC13_9STRA1.300e-1432.80CAAX protease self-immunity-domain-containing prot... [more]
A0A7H4GRI0_9GAMM3.510e-1031.75CPBP family intramembrane metalloprotease n=1 Tax=... [more]
A0A2E3A4H5_9BACT3.650e-931.15Uncharacterized protein n=1 Tax=Planctomycetes bac... [more]
A0A5B9Q9G7_9BACT2.760e-829.61CAAX amino terminal protease self-immunity n=1 Tax... [more]
A0A5Q4GZ09_9GAMM9.160e-829.94CPBP family intramembrane metalloprotease n=1 Tax=... [more]
UPI001963FA391.260e-730.87CPBP family intramembrane metalloprotease n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1010contigE-fasciculatus_F_contig1010:11535..14810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue3e-10
Seed eggNOG ortholog159749.K0TIM6
EggNOG free text desc.CAAX protease self-immunity
EggNOG OGs2E4JX@1,2SBFQ@2759,2XCVU@2836
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionCAAX amino terminal protease
Ec32 orthologEc-18_003780.1
Exons6
Model size1426
Cds size1152
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1010.117.1prot_E-fasciculatus_F_contig1010.117.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1010 11797..14798 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927512.4686897-UTR-E-fasciculatus_F_contig1010:11534..117961622927512.4686897-UTR-E-fasciculatus_F_contig1010:11534..11796Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1010 11535..11796 -
1695995572.3666627-UTR-E-fasciculatus_F_contig1010:11534..117961695995572.3666627-UTR-E-fasciculatus_F_contig1010:11534..11796Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1010 11535..11796 -
1622927512.5563748-UTR-E-fasciculatus_F_contig1010:14798..148101622927512.5563748-UTR-E-fasciculatus_F_contig1010:14798..14810Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1010 14799..14810 -
1695995572.4444509-UTR-E-fasciculatus_F_contig1010:14798..148101695995572.4444509-UTR-E-fasciculatus_F_contig1010:14798..14810Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1010 14799..14810 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927512.4800007-CDS-E-fasciculatus_F_contig1010:11796..118861622927512.4800007-CDS-E-fasciculatus_F_contig1010:11796..11886Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1010 11797..11886 -
1695995572.3782742-CDS-E-fasciculatus_F_contig1010:11796..118861695995572.3782742-CDS-E-fasciculatus_F_contig1010:11796..11886Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1010 11797..11886 -
1622927512.491117-CDS-E-fasciculatus_F_contig1010:12271..124241622927512.491117-CDS-E-fasciculatus_F_contig1010:12271..12424Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1010 12272..12424 -
1695995572.3960257-CDS-E-fasciculatus_F_contig1010:12271..124241695995572.3960257-CDS-E-fasciculatus_F_contig1010:12271..12424Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1010 12272..12424 -
1622927512.5042071-CDS-E-fasciculatus_F_contig1010:12625..127781622927512.5042071-CDS-E-fasciculatus_F_contig1010:12625..12778Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1010 12626..12778 -
1695995572.40573-CDS-E-fasciculatus_F_contig1010:12625..127781695995572.40573-CDS-E-fasciculatus_F_contig1010:12625..12778Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1010 12626..12778 -
1622927512.515318-CDS-E-fasciculatus_F_contig1010:13011..131931622927512.515318-CDS-E-fasciculatus_F_contig1010:13011..13193Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1010 13012..13193 -
1695995572.4142075-CDS-E-fasciculatus_F_contig1010:13011..131931695995572.4142075-CDS-E-fasciculatus_F_contig1010:13011..13193Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1010 13012..13193 -
1622927512.528665-CDS-E-fasciculatus_F_contig1010:13763..141701622927512.528665-CDS-E-fasciculatus_F_contig1010:13763..14170Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1010 13764..14170 -
1695995572.4241557-CDS-E-fasciculatus_F_contig1010:13763..141701695995572.4241557-CDS-E-fasciculatus_F_contig1010:13763..14170Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1010 13764..14170 -
1622927512.5441992-CDS-E-fasciculatus_F_contig1010:14631..147981622927512.5441992-CDS-E-fasciculatus_F_contig1010:14631..14798Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1010 14632..14798 -
1695995572.4343941-CDS-E-fasciculatus_F_contig1010:14631..147981695995572.4343941-CDS-E-fasciculatus_F_contig1010:14631..14798Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1010 14632..14798 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1010.117.1

>prot_E-fasciculatus_F_contig1010.117.1 ID=prot_E-fasciculatus_F_contig1010.117.1|Name=mRNA_E-fasciculatus_F_contig1010.117.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=384bp
MPPCPFCPRLACSPMKTITATSMLCCLTCSLPGLSFVVSPPTRLRRRWSA
LPKARRLTTHASLNQFGTGRPRGAARARGGGFFLRQRAGITSRRRIHRWD
WAVRSKDSPRGVSSSRDAASDQEEDDVLSFEEFEKEFLSAAPSRDGWNRG
TDGAVDSAGAATGINWRLLVEDILVQPLFLGVFAVLAKPALCRQVKSSLS
VTIHGAGLGILGSLPLFAYGLFLETRRDWAWVRTAQATTERAVLTLFGSK
RQVTKVAAVSIPLSMLVGASEECGFRGFLPLILATHTSLPTAAIVVLSGI
FCGMLHAVSLAYFVNATLNGIFFHCLLLSTGNIFVPMVAHAVHNSFALVH
CHFKTSGEQLAAKGHHCEGSSTNATERNLPARV*
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mRNA from alignment at E-fasciculatus_F_contig1010:11535..14810-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1010.117.1 ID=mRNA_E-fasciculatus_F_contig1010.117.1|Name=mRNA_E-fasciculatus_F_contig1010.117.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3276bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1010:11535..14810- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CATCGCCATTGCATGCCCCCGTGCCCGTTTTGCCCGAGGCTTGCTTGCTC
TCCGATGAAGACAATCACAGCGACTTCCATGCTGTGTTGCTTGACGTGTT
CTCTACCGGGACTCTCGTTCGTTGTTTCACCACCTACAAGATTGCGCCGG
CGGTGGTCAGCACTGCCCAAAGCACGAAGGTGAGAGGTGAACATCATGCA
GAACCAACCGCTTCCTGCACTGGCAGACGTAATGCTGTGTCGTTCTGAGC
GCGGTCGCTTGTTGCCCAATTTTGATGTCCCCGCGCACGTCCCGCCTTGC
CCGCTCCCTCTGCACACGTGGTAGAGAACGTATGCCTCGTCTTTTCCGGA
GAGGGAATGTAGTTATGCTGTGCGTTGCTGTGGTCCGCTGGTATGCTACT
GCTGCACATCCTGTGCAACTTTATCGGGTCTTACTGGCCGGTGCTCGATT
TGAGCCTGATTTGAGCTCATGTGGGCGCTGTAAACACACGCAGGACAGGC
AACACGGAGACACCCTCATAGGCATACTTTACGCTGTAACATCGCGATAA
CCAGGTAGGCTACAGCAGTCAGTAGTGGTGCCATTTGCTGTTGTGCACCT
ACCGGAGACCCCCTTCCCATCATCCATGTGTCCGAAACAGGCTTACAACA
CACGCCAGCCTGAATCAGTTCGGCACGGGCCGACCTAGGGGAGCCGCGCG
AGCGCGAGGCGGTGGGTTCTTCCTCCGGCAAAGGGCGGGAATCACCAGCC
GGCGACGAATTCATCGATGGGACTGGGCTGTTCGCTCGAAAGACTCGCCG
AGGGGGGTCTCGTCTTCGCGCGACGCCGCTTCCGACCAAGAAGAAGACGA
CGTCTTGTCATTCGAGGAGTTCGAAAAGGAGTTCCTGTCCGCGGCGCCAA
GTCGGGATGGATGGAACAGAGGCACCGACGGCGCAGTTGATTCCGCTGGC
GCTGCGACGGGGATAAACTGGCGATTGCTAGTCGAGGACATCTTGGTGCA
GCCACTTTTCTTGGGGGTTTTCGCTGTGCTCGCCAAGCCAGCGCTATGTG
AGTCATTGAAGTAAATGGGCAGTATCGGTGCGTCTGGAACAACAGGCCTG
CCAATCAAGTCGCGATCTCGTTGACGAGTTCTCAGTCGATCACACTCCCT
CTCGTGAGCTCGATTGCTGTCGCATCGCGCCAACAATTTGTAACCTAAGA
CTGCAACTGCGGCGTATTCGACGCTGGCTATGGCTTCTGCGCCCCGACAC
ACTAACGGGAACGGCAACCCAAAACCAAGGGATTGAAACGAAATAACCTC
CCCCCTTCGTCCTGCACGTTTTGGGCGGACTTCTCTTTGGTCTCCCTTGT
CAACGAAGCATTGACGTGCTTTCGAGTTTTGCACGAGTTTGAGGTTAGTG
GCGTAGCCTGTGTGGCCAGTACAGTAAGGCCAAAGGTACCACCACCATTT
GTGATTTAAGCGGCCGGTCAGACGAGCAGGCGAAAGTCTTTGCTCAGGGT
GAGCCTTTCGGGTGCCGGCTTTCAGAACAATCAACGACTCATTTTCGATC
AGACACAAGTCGCCCCCTCACATCTCCGTGATGCGATGCCCGCGTGTGCT
CTAAAAATACCAATCAGGCCGGCAGGTAAAATCTTCGTTGAGTGTGACAA
TACACGGCGCCGGTTTAGGGATACTCGGGTCACTACCGCTTTTCGCGTAC
GGACTTTTCCTCGAAACGCGACGAGACTGGGCTTGGGTGCGAACGGCCCA
GGCCACGACGGAACGCGCCGTCCTCACCCTCTTTGGGAGCAAACGGCAGG
TGAACTTCGCATCCCGAGTGTTGTTCTCCTCGCTGTTGCGGATCTCTCCT
AACATCGCCACACACACCACAGCAGTTTCTTTCTCGGGTAGTCGTTGTCA
ACCGATGGCCGTAATGATGCGCAATCCGACTGCGCAATCGACGAACTCAA
AGACGTGCCGTTGAAGTTTCGTGTATTCTGTCTGCTTATCACGTGCGCAA
ACCTCGAGTTTCGGAACCCGCCTACTGCGCAGGTGACAAAGGTGGCTGCG
GTATCGATCCCATTGTCGATGCTTGTCGGCGCTTCCGAAGAGTGCGGCTT
CCGAGGGTTTCTACCCCTGATACTCGCAACCCACACCAGCCTGCCTACGG
CCGCGATCGTGGTCCTCTCGGGGATCTTTTGCGGGGTAAGACACGGTCAC
GTGTGGAAAATAGCAAGTCGAAAAACGCGGAGATGCCGCGTCTTGAACCT
TCTTTTCGGTTTGTCATTCATCCACGGGACGAGGGCGGATAACTTGATGA
GTCGCGTTGTTTCACAATAAGATACTTCGTATGCAACAGCAACAGCGTCG
GTAACACACAAATCGTGCGCCAACGATCAATTGCAGATGCTCCACGCCGT
GTCGTTGGCGTACTTCGTCAACGCCACTTTGAACGGTATTTTCTTCCACT
GTCTACTGCTCTCGACTGGCAACATCTTCGTACCGATGGTTGCGCATGCT
GTCCACAACTCCTTCGCCCTAGTACACTGCCACTTCAAGGTATGTTTCCG
CAACATGTTGGCTCTTTGATTTCCAGGGTTGACAGAATGCAGTCGGGTAG
GAATAGCGGCAGCAGTCGCTGCCGTTACGTGTTGCCGAGTATCAAGATGA
CGGGCCCACTCCTCAATCCTTGACCCAGGATCAAACCGCTGACTTTAGGG
TCAGTCCTCGATAGCTTCTCAAGCACGCTTGTACTTTGTCAATCTCGAGC
GCAGGTTGATGCTTTACCCTTCGGGCTTTCGTCGTCGGCTTCCGTTGCGG
AGCGACCCCCCGCCAACATGAGCAATAGTTAAGGTAGACGGACAAAACCT
TTGTGAACGCGCGGCATGGACGAGAAACATGGGCTGCTACGCCTATTTCC
TGTTGCTGCACGTTATTCCCACAGACATCTGGAGAACAACTAGCCGCGAA
AGGGCATCACTGCGAGGGATCTTCAACAAATGCCACGGAGCGTAACCTGC
CGGCTCGTGTGTAAAACCAGCGGGCACTAGACTACCGTAGTTACGTGTTT
TGTGAGAGGCATGATCACGATTTGGAAGAAAATGACGGACAGGTCGATGG
GAGATTGGTACAGCTCGAGGTGGTTGATTAATCACACCGGATGCGTTCGG
CCCTTGGGAACTGTCAACACCGGCTGTGATATGGACACAACGCACATCAT
AATCTTGCCTAACAGCATGACAGGTTTGAATGTGCGGCGAGAGACGTGCC
CATGTATGTACTCCGGACTGTTGCAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1010:11535..14810-

>mRNA_E-fasciculatus_F_contig1010.117.1 ID=mRNA_E-fasciculatus_F_contig1010.117.1|Name=mRNA_E-fasciculatus_F_contig1010.117.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2304bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1010:11535..14810- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCCCCGTGCCCGTTTTGCCCGAGGCTTGCTTGCTCTCCGATGAAGAC
AATCACAGCGACTTCCATGCTGTGTTGCTTGACGTGTTCTCTACCGGGAC
TCTCGTTCGTTGTTTCACCACCTACAAGATTGCGCCGGCGGTGGTCAGCA
CTGCCCAAAGCACGAAGATGCCCCCGTGCCCGTTTTGCCCGAGGCTTGCT
TGCTCTCCGATGAAGACAATCACAGCGACTTCCATGCTGTGTTGCTTGAC
GTGTTCTCTACCGGGACTCTCGTTCGTTGTTTCACCACCTACAAGATTGC
GCCGGCGGTGGTCAGCACTGCCCAAAGCACGAAGGCTTACAACACACGCC
AGCCTGAATCAGTTCGGCACGGGCCGACCTAGGGGAGCCGCGCGAGCGCG
AGGCGGTGGGTTCTTCCTCCGGCAAAGGGCGGGAATCACCAGCCGGCGAC
GAATTCATCGATGGGACTGGGCTGTTCGCTCGAAAGACTCGCCGAGGGGG
GTCTCGTCTTCGCGCGACGCCGCTTCCGACCAAGAAGAAGACGACGTCTT
GTCATTCGAGGAGTTCGAAAAGGAGTTCCTGTCCGCGGCGCCAAGTCGGG
ATGGATGGAACAGAGGCACCGACGGCGCAGTTGATTCCGCTGGCGCTGCG
ACGGGGATAAACTGGCGATTGCTAGTCGAGGACATCTTGGTGCAGCCACT
TTTCTTGGGGGTTTTCGCTGTGCTCGCCAAGCCAGCGCTATGCTTACAAC
ACACGCCAGCCTGAATCAGTTCGGCACGGGCCGACCTAGGGGAGCCGCGC
GAGCGCGAGGCGGTGGGTTCTTCCTCCGGCAAAGGGCGGGAATCACCAGC
CGGCGACGAATTCATCGATGGGACTGGGCTGTTCGCTCGAAAGACTCGCC
GAGGGGGGTCTCGTCTTCGCGCGACGCCGCTTCCGACCAAGAAGAAGACG
ACGTCTTGTCATTCGAGGAGTTCGAAAAGGAGTTCCTGTCCGCGGCGCCA
AGTCGGGATGGATGGAACAGAGGCACCGACGGCGCAGTTGATTCCGCTGG
CGCTGCGACGGGGATAAACTGGCGATTGCTAGTCGAGGACATCTTGGTGC
AGCCACTTTTCTTGGGGGTTTTCGCTGTGCTCGCCAAGCCAGCGCTATGC
CGGCAGGTAAAATCTTCGTTGAGTGTGACAATACACGGCGCCGGTTTAGG
GATACTCGGGTCACTACCGCTTTTCGCGTACGGACTTTTCCTCGAAACGC
GACGAGACTGGGCTTGGGTGCGAACGGCCCAGGCCACGACGGAACGCGCC
GTCCTCACCCTCTTTGGGAGCAAACGGCAGGCCGGCAGGTAAAATCTTCG
TTGAGTGTGACAATACACGGCGCCGGTTTAGGGATACTCGGGTCACTACC
GCTTTTCGCGTACGGACTTTTCCTCGAAACGCGACGAGACTGGGCTTGGG
TGCGAACGGCCCAGGCCACGACGGAACGCGCCGTCCTCACCCTCTTTGGG
AGCAAACGGCAGGTGACAAAGGTGGCTGCGGTATCGATCCCATTGTCGAT
GCTTGTCGGCGCTTCCGAAGAGTGCGGCTTCCGAGGGTTTCTACCCCTGA
TACTCGCAACCCACACCAGCCTGCCTACGGCCGCGATCGTGGTCCTCTCG
GGGATCTTTTGCGGGGTGACAAAGGTGGCTGCGGTATCGATCCCATTGTC
GATGCTTGTCGGCGCTTCCGAAGAGTGCGGCTTCCGAGGGTTTCTACCCC
TGATACTCGCAACCCACACCAGCCTGCCTACGGCCGCGATCGTGGTCCTC
TCGGGGATCTTTTGCGGGATGCTCCACGCCGTGTCGTTGGCGTACTTCGT
CAACGCCACTTTGAACGGTATTTTCTTCCACTGTCTACTGCTCTCGACTG
GCAACATCTTCGTACCGATGGTTGCGCATGCTGTCCACAACTCCTTCGCC
CTAGTACACTGCCACTTCAAGATGCTCCACGCCGTGTCGTTGGCGTACTT
CGTCAACGCCACTTTGAACGGTATTTTCTTCCACTGTCTACTGCTCTCGA
CTGGCAACATCTTCGTACCGATGGTTGCGCATGCTGTCCACAACTCCTTC
GCCCTAGTACACTGCCACTTCAAGACATCTGGAGAACAACTAGCCGCGAA
AGGGCATCACTGCGAGGGATCTTCAACAAATGCCACGGAGCGTAACCTGC
CGGCTCGTGTGTAAACATCTGGAGAACAACTAGCCGCGAAAGGGCATCAC
TGCGAGGGATCTTCAACAAATGCCACGGAGCGTAACCTGCCGGCTCGTGT
GTAA
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