mRNA_E-fasciculatus_F_contig101.114.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig101.114.1
Unique NamemRNA_E-fasciculatus_F_contig101.114.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig101.114.1 vs. uniprot
Match: D8LF22_ECTSI (Amine oxidase-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF22_ECTSI)

HSP 1 Score: 145 bits (366), Expect = 4.210e-40
Identity = 66/67 (98.51%), Postives = 66/67 (98.51%), Query Frame = 1
Query:    1 YVEGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHTNTPTGTTVHAAIDSGDR 201
            YV GLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHTNTPTGTTVHAAIDSGDR
Sbjct:  371 YVGGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHTNTPTGTTVHAAIDSGDR 437          
BLAST of mRNA_E-fasciculatus_F_contig101.114.1 vs. uniprot
Match: A0A6H5JVR3_9PHAE (PAO protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVR3_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 1.180e-38
Identity = 64/67 (95.52%), Postives = 65/67 (97.01%), Query Frame = 1
Query:    1 YVEGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHTNTPTGTTVHAAIDSGDR 201
            YV GLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAAS+NGTLFFAGEHTNTPTG TVHAAIDSGDR
Sbjct:  472 YVGGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASINGTLFFAGEHTNTPTGMTVHAAIDSGDR 538          
BLAST of mRNA_E-fasciculatus_F_contig101.114.1 vs. uniprot
Match: A0A484DUS0_BRELC (Amino_oxidase domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484DUS0_BRELC)

HSP 1 Score: 71.2 bits (173), Expect = 7.350e-13
Identity = 36/68 (52.94%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    1 YVEGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHTN-TPTGTTVHAAIDSGDR 201
            +V+G   DW  DEP++RGGY YPR+G  +T    LAA VN  LFFAGE T     G +VHAA+D+G R
Sbjct:  406 FVKGTYKDW-GDEPWIRGGYAYPRVGQSDTASKDLAAPVNNRLFFAGEATAYEQPGMSVHAAVDTGTR 472          
BLAST of mRNA_E-fasciculatus_F_contig101.114.1 vs. uniprot
Match: W2NUE5_PHYPR (Amino_oxidase domain-containing protein n=10 Tax=Phytophthora TaxID=4783 RepID=W2NUE5_PHYPR)

HSP 1 Score: 69.3 bits (168), Expect = 3.500e-12
Identity = 34/68 (50.00%), Postives = 46/68 (67.65%), Query Frame = 1
Query:    1 YVEGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHTN-TPTGTTVHAAIDSGDR 201
            +V+G   DW  DEP++RGGY YPR+G  +T    LAA V+G +FFAGE T     G +VH+A+D+G R
Sbjct:  402 FVKGTYKDW-GDEPWIRGGYAYPRVGQSDTASYDLAAPVDGRIFFAGEATAFEQPGMSVHSAVDTGTR 468          
BLAST of mRNA_E-fasciculatus_F_contig101.114.1 vs. uniprot
Match: D0MQX8_PHYIT (Amino_oxidase domain-containing protein n=2 Tax=Phytophthora infestans TaxID=4787 RepID=D0MQX8_PHYIT)

HSP 1 Score: 68.9 bits (167), Expect = 4.130e-12
Identity = 35/68 (51.47%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    1 YVEGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHTN-TPTGTTVHAAIDSGDR 201
            YV+G   DW  DEP++RGGY +PR+G  +T    LAA V G +FFAGE T     G +VHAA+D+G R
Sbjct:  281 YVKGTYKDW-GDEPWIRGGYAFPRVGQSDTASYDLAAPVAGRIFFAGEATAFEQPGMSVHAAVDTGAR 347          
BLAST of mRNA_E-fasciculatus_F_contig101.114.1 vs. uniprot
Match: A0A0P1AT21_PLAHL (Amine oxidase-like protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1AT21_PLAHL)

HSP 1 Score: 67.0 bits (162), Expect = 2.230e-11
Identity = 33/68 (48.53%), Postives = 46/68 (67.65%), Query Frame = 1
Query:    1 YVEGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHTN-TPTGTTVHAAIDSGDR 201
            +V+G+  DW  DEP++ GGY YPR+G  ++  + LAA V+  LFFAGE T     G +VHAA+D+G R
Sbjct:  340 FVKGIYKDW-GDEPWICGGYAYPRVGQSDSASSELAAPVDNRLFFAGEATAFEQPGMSVHAAVDTGTR 406          
BLAST of mRNA_E-fasciculatus_F_contig101.114.1 vs. uniprot
Match: G4ZPG5_PHYSP (Amino_oxidase domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZPG5_PHYSP)

HSP 1 Score: 65.9 bits (159), Expect = 5.320e-11
Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 1
Query:    1 YVEGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHTN-TPTGTTVHAAIDSGDR 201
            +V G+  DW  DEP++ GGY +PR+G  +T    LAA V+  +FFAGE T     G +VHAAID+G R
Sbjct:  286 FVRGMYKDW-GDEPWIGGGYAFPRVGQSDTASQDLAAPVDNRIFFAGEATAFEQPGMSVHAAIDTGSR 352          
BLAST of mRNA_E-fasciculatus_F_contig101.114.1 vs. uniprot
Match: A0A6A3LZZ9_9STRA (Amino_oxidase domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3LZZ9_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 7.980e-11
Identity = 33/68 (48.53%), Postives = 44/68 (64.71%), Query Frame = 1
Query:    1 YVEGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHTN-TPTGTTVHAAIDSGDR 201
            +V G+  DW  DEP++ GGY +PR+G  +T    LAA V+  +FFAGE T     G +VHAAID+G R
Sbjct:  404 FVRGMYKDW-GDEPWIGGGYAFPRVGQSDTASQDLAAPVDNRIFFAGEATAFEQPGMSVHAAIDTGTR 470          
BLAST of mRNA_E-fasciculatus_F_contig101.114.1 vs. uniprot
Match: A0A3M6VMM2_9STRA (Amino_oxidase domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VMM2_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 1.190e-8
Identity = 30/68 (44.12%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    1 YVEGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHTN-TPTGTTVHAAIDSGDR 201
            +V+G   D+  DEP++ GGY +PR+G  ++    LAA+V+  +FFAGE T     G +VHAA+D+G R
Sbjct:  402 FVKGTYKDF-GDEPWIGGGYAFPRVGQSDSASEDLAAAVDNRVFFAGEATAFEQPGMSVHAAVDTGTR 468          
BLAST of mRNA_E-fasciculatus_F_contig101.114.1 vs. uniprot
Match: M4B442_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B442_HYAAE)

HSP 1 Score: 58.2 bits (139), Expect = 3.020e-8
Identity = 29/68 (42.65%), Postives = 45/68 (66.18%), Query Frame = 1
Query:    1 YVEGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHTN-TPTGTTVHAAIDSGDR 201
            +V+G+  D+  +EP++ GGY +PR+G  ++    LAA V+  +FFAGE T     G +VHAA+D+G R
Sbjct:  377 FVKGMYKDF-GNEPWIGGGYAFPRVGQSDSASQDLAAPVDNRIFFAGEATAYEQPGMSVHAAVDTGTR 443          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig101.114.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D8LF22_ECTSI4.210e-4098.51Amine oxidase-like protein n=1 Tax=Ectocarpus sili... [more]
A0A6H5JVR3_9PHAE1.180e-3895.52PAO protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A484DUS0_BRELC7.350e-1352.94Amino_oxidase domain-containing protein n=1 Tax=Br... [more]
W2NUE5_PHYPR3.500e-1250.00Amino_oxidase domain-containing protein n=10 Tax=P... [more]
D0MQX8_PHYIT4.130e-1251.47Amino_oxidase domain-containing protein n=2 Tax=Ph... [more]
A0A0P1AT21_PLAHL2.230e-1148.53Amine oxidase-like protein n=1 Tax=Plasmopara hals... [more]
G4ZPG5_PHYSP5.320e-1148.53Amino_oxidase domain-containing protein n=1 Tax=Ph... [more]
A0A6A3LZZ9_9STRA7.980e-1148.53Amino_oxidase domain-containing protein n=4 Tax=Ph... [more]
A0A3M6VMM2_9STRA1.190e-844.12Amino_oxidase domain-containing protein n=1 Tax=Pe... [more]
M4B442_HYAAE3.020e-842.65Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig101contigE-fasciculatus_F_contig101:40170..40373 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.7
Seed ortholog evalue3.8e-33
Seed eggNOG ortholog2880.D8LF22
KEGG koko:K19413
EggNOG free text desc.oxidoreductase activity
EggNOG OGsCOG1231@1,KOG0029@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Hectar predicted targeting categoryother localisation
Exons1
Model size204
Cds size204
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927512.1386187-CDS-E-fasciculatus_F_contig101:40169..403731622927512.1386187-CDS-E-fasciculatus_F_contig101:40169..40373Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig101 40170..40373 -
1695995572.195782-CDS-E-fasciculatus_F_contig101:40169..403731695995572.195782-CDS-E-fasciculatus_F_contig101:40169..40373Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig101 40170..40373 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig101.114.1prot_E-fasciculatus_F_contig101.114.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig101 40170..40373 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig101.114.1

>prot_E-fasciculatus_F_contig101.114.1 ID=prot_E-fasciculatus_F_contig101.114.1|Name=mRNA_E-fasciculatus_F_contig101.114.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=68bp
YVEGLVHDWVKDEPFVRGGYCYPRIGFDETTHAHLAASVNGTLFFAGEHT
NTPTGTTVHAAIDSGDR*
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mRNA from alignment at E-fasciculatus_F_contig101:40170..40373-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig101.114.1 ID=mRNA_E-fasciculatus_F_contig101.114.1|Name=mRNA_E-fasciculatus_F_contig101.114.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=204bp|location=Sequence derived from alignment at E-fasciculatus_F_contig101:40170..40373- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TATGTCGAAGGCCTGGTGCACGATTGGGTGAAAGACGAACCGTTTGTGCG GGGTGGTTATTGCTACCCGCGAATCGGGTTCGACGAGACTACTCATGCTC ACCTGGCCGCTAGCGTCAACGGAACGTTGTTCTTTGCTGGAGAACACACC AACACACCAACCGGAACGACGGTCCATGCTGCGATCGACTCGGGAGATAG GTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig101:40170..40373-

>mRNA_E-fasciculatus_F_contig101.114.1 ID=mRNA_E-fasciculatus_F_contig101.114.1|Name=mRNA_E-fasciculatus_F_contig101.114.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=408bp|location=Sequence derived from alignment at E-fasciculatus_F_contig101:40170..40373- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TATGTCGAAGGCCTGGTGCACGATTGGGTGAAAGACGAACCGTTTGTGCG
GGGTGGTTATTGCTACCCGCGAATCGGGTTCGACGAGACTACTCATGCTC
ACCTGGCCGCTAGCGTCAACGGAACGTTGTTCTTTGCTGGAGAACACACC
AACACACCAACCGGAACGACGGTCCATGCTGCGATCGACTCGGGAGATAG
GTGATATGTCGAAGGCCTGGTGCACGATTGGGTGAAAGACGAACCGTTTG
TGCGGGGTGGTTATTGCTACCCGCGAATCGGGTTCGACGAGACTACTCAT
GCTCACCTGGCCGCTAGCGTCAACGGAACGTTGTTCTTTGCTGGAGAACA
CACCAACACACCAACCGGAACGACGGTCCATGCTGCGATCGACTCGGGAG
ATAGGTGA
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