mRNA_E-fasciculatus_F_contig1138.1108.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1138.1108.1
Unique NamemRNA_E-fasciculatus_F_contig1138.1108.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1138.1108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1138contigE-fasciculatus_F_contig1138:14859..15309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size451
Cds size342
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1138.1108.1prot_E-fasciculatus_F_contig1138.1108.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1138 14895..15236 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927647.3175867-UTR-E-fasciculatus_F_contig1138:14858..148941622927647.3175867-UTR-E-fasciculatus_F_contig1138:14858..14894Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1138 14859..14894 +
1695995633.7897673-UTR-E-fasciculatus_F_contig1138:14858..148941695995633.7897673-UTR-E-fasciculatus_F_contig1138:14858..14894Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1138 14859..14894 +
1622927647.337013-UTR-E-fasciculatus_F_contig1138:15236..153091622927647.337013-UTR-E-fasciculatus_F_contig1138:15236..15309Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1138 15237..15309 +
1695995633.8097336-UTR-E-fasciculatus_F_contig1138:15236..153091695995633.8097336-UTR-E-fasciculatus_F_contig1138:15236..15309Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1138 15237..15309 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927647.3276787-CDS-E-fasciculatus_F_contig1138:14894..152361622927647.3276787-CDS-E-fasciculatus_F_contig1138:14894..15236Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1138 14895..15236 +
1695995633.8006692-CDS-E-fasciculatus_F_contig1138:14894..152361695995633.8006692-CDS-E-fasciculatus_F_contig1138:14894..15236Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1138 14895..15236 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1138.1108.1

>prot_E-fasciculatus_F_contig1138.1108.1 ID=prot_E-fasciculatus_F_contig1138.1108.1|Name=mRNA_E-fasciculatus_F_contig1138.1108.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=114bp
MHMYTVARWEGWADGWASLAKGRTTTAQVAKGESRTPAGLNDKRLIFKSR
SIQCRTPAMVGSGSACVCTRYKAQTYRVPPVTLTTESPAKQRTPARDGQD
RAKRHANPGKPCT*
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mRNA from alignment at E-fasciculatus_F_contig1138:14859..15309+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1138.1108.1 ID=mRNA_E-fasciculatus_F_contig1138.1108.1|Name=mRNA_E-fasciculatus_F_contig1138.1108.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=451bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1138:14859..15309+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGACGAGTGGTGCGACGGCGATTGATTGTTTATCGTATGCATATGTACAC
AGTTGCACGATGGGAGGGGTGGGCCGATGGATGGGCTAGTCTTGCCAAAG
GAAGGACCACGACAGCCCAAGTAGCCAAGGGCGAAAGCAGAACTCCGGCC
GGGCTCAATGACAAACGCCTGATCTTCAAAAGTAGAAGCATCCAATGTCG
AACACCGGCTATGGTCGGTTCCGGGTCGGCATGTGTATGCACACGATACA
AAGCCCAAACATACCGTGTGCCACCCGTGACATTAACGACTGAGTCACCA
GCAAAGCAACGAACGCCTGCGCGAGACGGGCAGGACAGAGCGAAACGACA
TGCGAATCCAGGGAAGCCATGTACATGACGCCCCCGGATCCCGTGCTGTG
GAGACCGACTCACTTGCTGACCCTAACCGGGAACACGACAAAGGAGTCCA
G
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1138:14859..15309+

>mRNA_E-fasciculatus_F_contig1138.1108.1 ID=mRNA_E-fasciculatus_F_contig1138.1108.1|Name=mRNA_E-fasciculatus_F_contig1138.1108.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=684bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1138:14859..15309+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCATATGTACACAGTTGCACGATGGGAGGGGTGGGCCGATGGATGGGC
TAGTCTTGCCAAAGGAAGGACCACGACAGCCCAAGTAGCCAAGGGCGAAA
GCAGAACTCCGGCCGGGCTCAATGACAAACGCCTGATCTTCAAAAGTAGA
AGCATCCAATGTCGAACACCGGCTATGGTCGGTTCCGGGTCGGCATGTGT
ATGCACACGATACAAAGCCCAAACATACCGTGTGCCACCCGTGACATTAA
CGACTGAGTCACCAGCAAAGCAACGAACGCCTGCGCGAGACGGGCAGGAC
AGAGCGAAACGACATGCGAATCCAGGGAAGCCATGTACATGAATGCATAT
GTACACAGTTGCACGATGGGAGGGGTGGGCCGATGGATGGGCTAGTCTTG
CCAAAGGAAGGACCACGACAGCCCAAGTAGCCAAGGGCGAAAGCAGAACT
CCGGCCGGGCTCAATGACAAACGCCTGATCTTCAAAAGTAGAAGCATCCA
ATGTCGAACACCGGCTATGGTCGGTTCCGGGTCGGCATGTGTATGCACAC
GATACAAAGCCCAAACATACCGTGTGCCACCCGTGACATTAACGACTGAG
TCACCAGCAAAGCAACGAACGCCTGCGCGAGACGGGCAGGACAGAGCGAA
ACGACATGCGAATCCAGGGAAGCCATGTACATGA
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