mRNA_E-fasciculatus_F_contig11379.1104.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11379.1104.1
Unique NamemRNA_E-fasciculatus_F_contig11379.1104.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11379.1104.1 vs. uniprot
Match: D7FWT4_ECTSI (Polynucleotide adenylyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWT4_ECTSI)

HSP 1 Score: 189 bits (480), Expect = 6.000e-56
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 1 
Query:    1 QVPNYDSFLPVVRCVRRWAKSRGLYSNKMGYLGGVNFNIMVAFACQMYPNAGPSTLLHRFFKLMAGWNWPNAIQLVQPYDAELGLEV 261
            QVPNYDSFLPVVRCVRRWAKSRGLYSNKMGYLGGVNFNIMVAFACQMYPNAGPSTLLHRFFKLMAGWNWPNAIQLVQPYDAELGLEV
Sbjct:  194 QVPNYDSFLPVVRCVRRWAKSRGLYSNKMGYLGGVNFNIMVAFACQMYPNAGPSTLLHRFFKLMAGWNWPNAIQLVQPYDAELGLEV 280
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BLAST of mRNA_E-fasciculatus_F_contig11379.1104.1 vs. uniprot
Match: A0A6H5JKW8_9PHAE (Polynucleotide adenylyltransferase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKW8_9PHAE)

HSP 1 Score: 186 bits (472), Expect = 9.760e-54
Identity = 85/86 (98.84%), Postives = 86/86 (100.00%), Query Frame = 1 
Query:    4 VPNYDSFLPVVRCVRRWAKSRGLYSNKMGYLGGVNFNIMVAFACQMYPNAGPSTLLHRFFKLMAGWNWPNAIQLVQPYDAELGLEV 261
            VPNYDSFLPVVRCVR+WAKSRGLYSNKMGYLGGVNFNIMVAFACQMYPNAGPSTLLHRFFKLMAGWNWPNAIQLVQPYDAELGLEV
Sbjct:  220 VPNYDSFLPVVRCVRKWAKSRGLYSNKMGYLGGVNFNIMVAFACQMYPNAGPSTLLHRFFKLMAGWNWPNAIQLVQPYDAELGLEV 305
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BLAST of mRNA_E-fasciculatus_F_contig11379.1104.1 vs. uniprot
Match: A0A835ZG61_9STRA (Polynucleotide adenylyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG61_9STRA)

HSP 1 Score: 136 bits (343), Expect = 1.170e-35
Identity = 62/86 (72.09%), Postives = 69/86 (80.23%), Query Frame = 1 
Query:    4 VPNYDSFLPVVRCVRRWAKSRGLYSNKMGYLGGVNFNIMVAFACQMYPNAGPSTLLHRFFKLMAGWNWPNAIQLVQPYDAELGLEV 261
            VPNY SFLPVVR VR WAK RG+Y NKMGYLGGVNFNI+VAFACQ+YP A PS LL  FFK+M  W WPN I L +P+DA LGL+V
Sbjct:  203 VPNYASFLPVVRLVRVWAKRRGIYGNKMGYLGGVNFNILVAFACQLYPRASPSKLLASFFKVMHSWAWPNPIHLTRPHDAALGLQV 288
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BLAST of mRNA_E-fasciculatus_F_contig11379.1104.1 vs. uniprot
Match: A0A7S4B388_CHRCT (Poly(A) polymerase n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4B388_CHRCT)

HSP 1 Score: 129 bits (324), Expect = 4.530e-33
Identity = 58/85 (68.24%), Postives = 64/85 (75.29%), Query Frame = 1 
Query:    4 VPNYDSFLPVVRCVRRWAKSRGLYSNKMGYLGGVNFNIMVAFACQMYPNAGPSTLLHRFFKLMAGWNWPNAIQLVQPYDAELGLE 258
            VPN+DSFL V+RCVR WAK RG+YSNK GYLGGVN NI+VAF CQ YPNA  S LL RFF ++  W WP  I L  PYDA LGLE
Sbjct:  211 VPNFDSFLLVLRCVRLWAKRRGIYSNKFGYLGGVNCNILVAFVCQRYPNAASSLLLERFFYILKNWEWPTPIMLTPPYDAGLGLE 295
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BLAST of mRNA_E-fasciculatus_F_contig11379.1104.1 vs. uniprot
Match: A0A2D4BYW1_PYTIN (Poly(A) polymerase n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BYW1_PYTIN)

HSP 1 Score: 124 bits (311), Expect = 2.800e-31
Identity = 57/85 (67.06%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:    7 PNYDSFLPVVRCVRRWAKSRGLYSNKMGYLGGVNFNIMVAFACQMYPNAGPSTLLHRFFKLMAGWNWPNAIQLVQPYDAELGLEV 261
            PN DSF+ V+R VRRWAK RG+YSNKMGYLGGVN+ I+V F  Q+YP A PSTLL RFF +++ W WP AIQL + YDA+LGLEV
Sbjct:  170 PNRDSFISVLRIVRRWAKRRGIYSNKMGYLGGVNWCILVCFINQLYPTAAPSTLLLRFFMVLSNWKWPLAIQLCKTYDAKLGLEV 254
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BLAST of mRNA_E-fasciculatus_F_contig11379.1104.1 vs. uniprot
Match: K3WQA8_GLOUD (Polynucleotide adenylyltransferase n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WQA8_GLOUD)

HSP 1 Score: 124 bits (311), Expect = 3.320e-31
Identity = 58/85 (68.24%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:    7 PNYDSFLPVVRCVRRWAKSRGLYSNKMGYLGGVNFNIMVAFACQMYPNAGPSTLLHRFFKLMAGWNWPNAIQLVQPYDAELGLEV 261
            PN DSF+ V+R VRRWAK RGLYSNKMGYLGGVN+ I+V F  Q+YP A PSTLL RFF ++A W WP AIQL + +DA+LGLEV
Sbjct:  209 PNRDSFISVLRIVRRWAKRRGLYSNKMGYLGGVNWCILVCFINQLYPTAAPSTLLLRFFMVLANWKWPLAIQLCKTHDAKLGLEV 293
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BLAST of mRNA_E-fasciculatus_F_contig11379.1104.1 vs. uniprot
Match: A0A6G0WNJ7_9STRA (Poly(A) polymerase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WNJ7_9STRA)

HSP 1 Score: 123 bits (308), Expect = 7.180e-31
Identity = 56/85 (65.88%), Postives = 69/85 (81.18%), Query Frame = 1 
Query:    7 PNYDSFLPVVRCVRRWAKSRGLYSNKMGYLGGVNFNIMVAFACQMYPNAGPSTLLHRFFKLMAGWNWPNAIQLVQPYDAELGLEV 261
            PN +SF+ V+R VRRWAK RGLYSNK+GYLGGVN+ I+V F  Q+YP A PSTLL RFF +++ W WP+AIQL + YDA+LGLEV
Sbjct:  209 PNRESFIAVLRIVRRWAKRRGLYSNKLGYLGGVNWCILVCFINQLYPTAAPSTLLLRFFMVLSQWKWPSAIQLCKTYDAKLGLEV 293
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BLAST of mRNA_E-fasciculatus_F_contig11379.1104.1 vs. uniprot
Match: A0A8K1CSA9_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CSA9_PYTOL)

HSP 1 Score: 122 bits (307), Expect = 1.080e-30
Identity = 57/85 (67.06%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:    7 PNYDSFLPVVRCVRRWAKSRGLYSNKMGYLGGVNFNIMVAFACQMYPNAGPSTLLHRFFKLMAGWNWPNAIQLVQPYDAELGLEV 261
            PN +SF+ V+R VRRWAK RGLYSNKMGYLGGVN+ I+V F  Q+YP A PSTLL RFF +++ W WP AIQL + YDA+LGLEV
Sbjct:  209 PNRESFIGVLRVVRRWAKRRGLYSNKMGYLGGVNWCILVCFVNQLYPTAAPSTLLLRFFMVLSTWKWPLAIQLCKTYDAKLGLEV 293
[Close]
BLAST of mRNA_E-fasciculatus_F_contig11379.1104.1 vs. uniprot
Match: A0A5D6Y2P8_9STRA (Polynucleotide adenylyltransferase n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y2P8_9STRA)

HSP 1 Score: 122 bits (307), Expect = 1.210e-30
Identity = 57/85 (67.06%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:    7 PNYDSFLPVVRCVRRWAKSRGLYSNKMGYLGGVNFNIMVAFACQMYPNAGPSTLLHRFFKLMAGWNWPNAIQLVQPYDAELGLEV 261
            PN +SF+ V+R VRRWAK RGLYSNKMGYLGGVN+ I+V F  Q+YP A PSTLL RFF ++A W WP AIQL + +DA+LGLEV
Sbjct:  209 PNRESFISVLRVVRRWAKRRGLYSNKMGYLGGVNWCILVCFINQLYPTAAPSTLLLRFFMVLANWKWPLAIQLCKTHDAKLGLEV 293
[Close]
BLAST of mRNA_E-fasciculatus_F_contig11379.1104.1 vs. uniprot
Match: A0A485KNG9_9STRA (Poly(A) polymerase n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KNG9_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.450e-30
Identity = 55/85 (64.71%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:    7 PNYDSFLPVVRCVRRWAKSRGLYSNKMGYLGGVNFNIMVAFACQMYPNAGPSTLLHRFFKLMAGWNWPNAIQLVQPYDAELGLEV 261
            PN  SF+ V+R VRRWAK RGLYSNK+GYLGGVN+ I+V F  Q+YP A PSTLL RFF +++ W WP+AIQL + YDA+LGLE+
Sbjct:  209 PNRSSFIAVLRIVRRWAKKRGLYSNKLGYLGGVNWCILVCFINQLYPTAAPSTLLLRFFMVLSQWKWPSAIQLCKTYDAKLGLEI 293
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11379.1104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWT4_ECTSI6.000e-56100.00Polynucleotide adenylyltransferase n=1 Tax=Ectocar... [more]
A0A6H5JKW8_9PHAE9.760e-5498.84Polynucleotide adenylyltransferase n=1 Tax=Ectocar... [more]
A0A835ZG61_9STRA1.170e-3572.09Polynucleotide adenylyltransferase n=1 Tax=Tribone... [more]
A0A7S4B388_CHRCT4.530e-3368.24Poly(A) polymerase n=1 Tax=Chrysotila carterae Tax... [more]
A0A2D4BYW1_PYTIN2.800e-3167.06Poly(A) polymerase n=2 Tax=Pythium insidiosum TaxI... [more]
K3WQA8_GLOUD3.320e-3168.24Polynucleotide adenylyltransferase n=1 Tax=Globisp... [more]
A0A6G0WNJ7_9STRA7.180e-3165.88Poly(A) polymerase n=1 Tax=Aphanomyces euteiches T... [more]
A0A8K1CSA9_PYTOL1.080e-3067.06Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A5D6Y2P8_9STRA1.210e-3067.06Polynucleotide adenylyltransferase n=1 Tax=Pythium... [more]
A0A485KNG9_9STRA1.450e-3064.71Poly(A) polymerase n=1 Tax=Aphanomyces stellatus T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11379contigE-fasciculatus_F_contig11379:3307..4191 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.0
Seed ortholog evalue2.3e-46
Seed eggNOG ortholog2880.D7FWT4
KEGG koko:K09254,ko:K14376
KEGG Pathwayko03015,ko04014,ko04624,ko05202,ko05203,map03015,map04014,map04624,map05202,map05203
GOsGO:0000003,GO:0002682,GO:0002683,GO:0003006,GO:0003674,GO:0003824,GO:0004652,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005847,GO:0005849,GO:0006139,GO:0006378,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008285,GO:0009653,GO:0009791,GO:0009908,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016740,GO:0016772,GO:0016779,GO:0022414,GO:0031123,GO:0031124,GO:0031347,GO:0031348,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034641,GO:0042127,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0045088,GO:0045824,GO:0046483,GO:0048366,GO:0048367,GO:0048437,GO:0048438,GO:0048441,GO:0048444,GO:0048446,GO:0048449,GO:0048451,GO:0048465,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048608,GO:0048646,GO:0048731,GO:0048827,GO:0048856,GO:0050776,GO:0050777,GO:0050789,GO:0050794,GO:0061458,GO:0065007,GO:0070013,GO:0070566,GO:0071704,GO:0080134,GO:0090304,GO:0090567,GO:0090696,GO:0090697,GO:0090698,GO:0099402,GO:1901360,GO:1905392,GO:1905393
EggNOG free text desc.interspecies interaction between organisms
EggNOG OGsCOG5186@1,KOG2245@2759
EC2.7.7.19
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000,ko03019
Hectar predicted targeting categoryother localisation
Exons2
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927647.1562164-CDS-E-fasciculatus_F_contig11379:3306..34291622927647.1562164-CDS-E-fasciculatus_F_contig11379:3306..3429Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11379 3307..3429 -
1695995633.6843483-CDS-E-fasciculatus_F_contig11379:3306..34291695995633.6843483-CDS-E-fasciculatus_F_contig11379:3306..3429Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11379 3307..3429 -
1622927647.1663637-CDS-E-fasciculatus_F_contig11379:4053..41911622927647.1663637-CDS-E-fasciculatus_F_contig11379:4053..4191Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11379 4054..4191 -
1695995633.698632-CDS-E-fasciculatus_F_contig11379:4053..41911695995633.698632-CDS-E-fasciculatus_F_contig11379:4053..4191Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11379 4054..4191 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11379.1104.1prot_E-fasciculatus_F_contig11379.1104.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11379 3307..4191 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11379.1104.1

>prot_E-fasciculatus_F_contig11379.1104.1 ID=prot_E-fasciculatus_F_contig11379.1104.1|Name=mRNA_E-fasciculatus_F_contig11379.1104.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=87bp
QVPNYDSFLPVVRCVRRWAKSRGLYSNKMGYLGGVNFNIMVAFACQMYPN
AGPSTLLHRFFKLMAGWNWPNAIQLVQPYDAELGLEV
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mRNA from alignment at E-fasciculatus_F_contig11379:3307..4191-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11379.1104.1 ID=mRNA_E-fasciculatus_F_contig11379.1104.1|Name=mRNA_E-fasciculatus_F_contig11379.1104.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=885bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11379:3307..4191- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGTTCCGAACTACGATTCTTTTCTCCCGGTGGTGCGGTGCGTCCGGAG
GTGGGCCAAATCCAGGGGTTTGTATAGCAACAAGATGGGATACTTGGGAG
GGGTGAACTTCAACATCATGGTGGCCTTCGCTTGCCAGGTGGGCGGTGAA
TCAACACTGAGGCAGTGGCGGTTGCGTGTGAGCGATGATACCATGCAGTT
GGGGGGGGGTTGTTGAGTGCCGGCATATTCGTACCCAGAGAACTGATCGG
CACATCAGCACTAAGCAGGGGCCCCCCTGCTGTATTGACGAACAAGCTCG
TTTTGTATGCTGTGGTAGTCTCTACTTTCTTCCTTCGCATGTTTCGTTTG
ATTGTTGGTGAGAAGGAGGGCGTCGTGAGGGCCTGCAGATGCGGTTGTGT
TTGGCATGTCGTTTCTCCGATCACATCCATCTCCGAACCTCGGATCACAT
CTCCGATCATATTATATCTCCGATCACATCTCCGATCACACGTCGGATCA
CATCTCTGATCATATCTCCGGATCACATGTCGGATCACACCTCCGATCAC
ATATCCCACCACATCTCCAATCACATCTCCGATCACACCTCCGGCTCTAG
ACGCCACGGTGATGTTAGATCGCCTACCGTACGACACGGCATACCCAACG
AACGATCTAATAAGGCATCTTCGCAGCACCCCTTGTAGTCCGAGCATGAA
CATGAATAGGAGCTCTCCGCGTGCCTCCGAACCGACGTCGTCGCTGTCGT
TGTCGTTGCCAGATGTACCCGAACGCCGGGCCGTCGACCCTTCTGCATCG
GTTCTTCAAGCTCATGGCCGGTTGGAACTGGCCCAACGCCATCCAGCTCG
TGCAGCCTTACGACGCTGAACTTGGACTGGAGGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11379:3307..4191-

>mRNA_E-fasciculatus_F_contig11379.1104.1 ID=mRNA_E-fasciculatus_F_contig11379.1104.1|Name=mRNA_E-fasciculatus_F_contig11379.1104.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=522bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11379:3307..4191- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGTTCCGAACTACGATTCTTTTCTCCCGGTGGTGCGGTGCGTCCGGAG
GTGGGCCAAATCCAGGGGTTTGTATAGCAACAAGATGGGATACTTGGGAG
GGGTGAACTTCAACATCATGGTGGCCTTCGCTTGCCAGCAGGTTCCGAAC
TACGATTCTTTTCTCCCGGTGGTGCGGTGCGTCCGGAGGTGGGCCAAATC
CAGGGGTTTGTATAGCAACAAGATGGGATACTTGGGAGGGGTGAACTTCA
ACATCATGGTGGCCTTCGCTTGCCAGATGTACCCGAACGCCGGGCCGTCG
ACCCTTCTGCATCGGTTCTTCAAGCTCATGGCCGGTTGGAACTGGCCCAA
CGCCATCCAGCTCGTGCAGCCTTACGACGCTGAACTTGGACTGGAGGTGA
TGTACCCGAACGCCGGGCCGTCGACCCTTCTGCATCGGTTCTTCAAGCTC
ATGGCCGGTTGGAACTGGCCCAACGCCATCCAGCTCGTGCAGCCTTACGA
CGCTGAACTTGGACTGGAGGTG
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