mRNA_E-fasciculatus_F_contig11371.1100.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11371.1100.1
Unique NamemRNA_E-fasciculatus_F_contig11371.1100.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11371.1100.1 vs. uniprot
Match: D8LLJ0_ECTSI (START domain-containing protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLJ0_ECTSI)

HSP 1 Score: 593 bits (1528), Expect = 1.180e-207
Identity = 349/414 (84.30%), Postives = 357/414 (86.23%), Query Frame = 1 
Query:    1 RSTGSTRARGREGETLMLRERVAILAATLLLLKCHSMSGGATAGALPDQQXXXXHVPHHGGSTPQRAQDFGSQYPQTGRFEARHKRGLVLDDEPAGEEWEEADRECWSATIAAIVASGSTLALQRTPRPDEQQSASSAEEYGRQXXXXXXXXXXXXXYHRKDRDNSSTPRFRRMRAELSANLDAWRMRRRRARETTPAAAIVIRRHLTQLTAQLSELTGEGFRRAERLLSTANASGNVGIRIAGCAELLRRRARELLLLGLRKKQKNLDGLGGEGKLGKGEEAEAERRKMRELRLVTDKIVQNVVDVVARDGWEVVVEREGVVVHRQYLALGPDGTPEAPAAPA---QAAGAPKAEVSSAFVGGRVEGSADDPAAVGDDSVKAKPPQFACVKASAILSVPPEVVYLLFADNSRV 1233
            R T  T ARGRE E LMLRERVAILAATLLLLKCHSMSGGAT GALPDQQ    HVPH+G  TP RAQDFGS+YPQTGRFEA HKRGLVLDDEPAGEEWE ADRECW ATIAAIVASGSTLALQRT +PDEQQSAS AE YGRQ      XXXXXXX         S PRFRRMRAELSANLDAWRMRRRRARETTPAAAIVIR+HLTQLTAQLSELTGEGFRRAERLLS A ASGNVGIRIAGCAELLRRR REL LLGLRKKQ N DGLGGEGKLGKG+E EAERRKMREL+L+TDKIVQNVVDVVARDGWEVVVEREGVVVHRQYLALGPDGTPEA        QAAG PKAE SSAFVGGRVEGSADD   VGDDS K+KPPQFACVKASAILSVPPEVVYLLFADNSRV
Sbjct:   18 RDTQGTWARGREAENLMLRERVAILAATLLLLKCHSMSGGAT-GALPDQQQHRRHVPHYG-CTPPRAQDFGSRYPQTGRFEAWHKRGLVLDDEPAGEEWEGADRECWGATIAAIVASGSTLALQRTLKPDEQQSAS-AEGYGRQPRHYRRXXXXXXXXXXXXXXXXSAPRFRRMRAELSANLDAWRMRRRRARETTPAAAIVIRQHLTQLTAQLSELTGEGFRRAERLLSAAKASGNVGIRIAGCAELLRRRGRELFLLGLRKKQ-NPDGLGGEGKLGKGKEGEAERRKMRELQLLTDKIVQNVVDVVARDGWEVVVEREGVVVHRQYLALGPDGTPEAXXXXXXXXQAAGVPKAEASSAFVGGRVEGSADDSVPVGDDSGKSKPPQFACVKASAILSVPPEVVYLLFADNSRV 427
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BLAST of mRNA_E-fasciculatus_F_contig11371.1100.1 vs. uniprot
Match: A0A6H5J623_9PHAE (START domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J623_9PHAE)

HSP 1 Score: 572 bits (1474), Expect = 9.060e-199
Identity = 335/398 (84.17%), Postives = 353/398 (88.69%), Query Frame = 1 
Query:   49 MLRERVAILAATLLLLKCHSMSGGATAGALPDQQXXXXHVPHHGGSTPQRAQDFGSQYPQTGRFEARHKRGLVLDDEPAGEEWEEADRECWSATIAAIVASGSTLALQRTPRPDEQQSASSAEEYGRQXXXXXXXXXXXXXYHRKDRDNSSTPRFRRMRAELSANLDAWRMRRRRARETTPAAAIVIRRHLTQLTAQLSELTGEGFRRAERLLSTANASGNVGIRIAGCAELLRRRARELLLLGLRKKQKNLDGLGGEGKLGKGEEAEAERRKMRELRLVTDKIVQNVVDVVARDGWEVVVEREGVVVHRQYLALGPDGTPEAPAAPA---QAAGAPKAEVSSAFVGGRVEGSADDPAAVGDDSVKAKPPQFACVKASAILSVPPEVVYLLFADNSRV 1233
            MLRERVAILAATLLLL+CHSMSGGAT GA+PDQQ    HVPH+G  TPQRAQDFGS+YPQTGRFEA+HKRGLV+DD+PAGEEWEEAD ECWSAT+AAIVASGSTLALQRT +PDEQQSAS AE YGRQ     XXXXXXXX       NSS PRFRR+RAELSANLDAWRMRRRRARET PAAAIVIR+HLT LTAQLSELTGEGFRRAERLLS ANASGNVGIRIAGCAELLRRR REL LLGLRK+Q N DG GG+ KLG G+E EAERRKMREL+L+TDKIVQNVVDVVARDGWEVVVEREGVVVHRQYLALGPDGTPEAPAAPA   QAAG PKAE  SA VGGRVEGSADDPA VG+DS K +PPQFACVKASAILSVPPEVVYLLFADNSRV
Sbjct:    1 MLRERVAILAATLLLLECHSMSGGAT-GAIPDQQQHRRHVPHYG-CTPQRAQDFGSRYPQTGRFEAQHKRGLVVDDQPAGEEWEEADLECWSATMAAIVASGSTLALQRTLKPDEQQSAS-AEGYGRQQRHIRXXXXXXXXXXXXXXXNSSAPRFRRIRAELSANLDAWRMRRRRARETIPAAAIVIRQHLTHLTAQLSELTGEGFRRAERLLSAANASGNVGIRIAGCAELLRRRGRELFLLGLRKRQ-NPDGSGGD-KLGMGKEGEAERRKMRELQLLTDKIVQNVVDVVARDGWEVVVEREGVVVHRQYLALGPDGTPEAPAAPAAHAQAAGVPKAEAYSASVGGRVEGSADDPAPVGEDSGKFRPPQFACVKASAILSVPPEVVYLLFADNSRV 393
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11371.1100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LLJ0_ECTSI1.180e-20784.30START domain-containing protein (Fragment) n=1 Tax... [more]
A0A6H5J623_9PHAE9.060e-19984.17START domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11371contigE-fasciculatus_F_contig11371:2..1234 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSTART domain
Ec32 orthologEc-22_001140.1
Exons1
Model size1233
Cds size1233
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927646.9414122-CDS-E-fasciculatus_F_contig11371:1..12341622927646.9414122-CDS-E-fasciculatus_F_contig11371:1..1234Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11371 2..1234 -
1695995633.6251118-CDS-E-fasciculatus_F_contig11371:1..12341695995633.6251118-CDS-E-fasciculatus_F_contig11371:1..1234Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11371 2..1234 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11371.1100.1prot_E-fasciculatus_F_contig11371.1100.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11371 2..1234 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11371.1100.1

>prot_E-fasciculatus_F_contig11371.1100.1 ID=prot_E-fasciculatus_F_contig11371.1100.1|Name=mRNA_E-fasciculatus_F_contig11371.1100.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=411bp
RSTGSTRARGREGETLMLRERVAILAATLLLLKCHSMSGGATAGALPDQQ
QRRRHVPHHGGSTPQRAQDFGSQYPQTGRFEARHKRGLVLDDEPAGEEWE
EADRECWSATIAAIVASGSTLALQRTPRPDEQQSASSAEEYGRQQRHNRR
RRRRRHRYHRKDRDNSSTPRFRRMRAELSANLDAWRMRRRRARETTPAAA
IVIRRHLTQLTAQLSELTGEGFRRAERLLSTANASGNVGIRIAGCAELLR
RRARELLLLGLRKKQKNLDGLGGEGKLGKGEEAEAERRKMRELRLVTDKI
VQNVVDVVARDGWEVVVEREGVVVHRQYLALGPDGTPEAPAAPAQAAGAP
KAEVSSAFVGGRVEGSADDPAAVGDDSVKAKPPQFACVKASAILSVPPEV
VYLLFADNSRV
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mRNA from alignment at E-fasciculatus_F_contig11371:2..1234-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11371.1100.1 ID=mRNA_E-fasciculatus_F_contig11371.1100.1|Name=mRNA_E-fasciculatus_F_contig11371.1100.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1233bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11371:2..1234- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGTAGTACAGGGAGCACGCGGGCGAGAGGCAGAGAGGGAGAAACCCTTAT
GCTTCGAGAGCGGGTGGCCATTCTGGCCGCAACGCTGCTCTTGTTGAAGT
GTCACTCGATGTCGGGGGGTGCCACTGCTGGTGCATTACCTGATCAACAA
CAGCGTCGGCGACATGTCCCGCACCACGGCGGCTCTACTCCCCAACGAGC
GCAGGACTTCGGAAGCCAGTACCCTCAGACAGGAAGGTTCGAGGCGCGGC
ACAAGAGGGGACTTGTTTTAGACGATGAACCGGCGGGCGAGGAATGGGAA
GAGGCCGATCGCGAGTGTTGGAGTGCCACCATAGCAGCGATAGTCGCTTC
CGGGTCGACGCTTGCCCTTCAACGAACACCCAGGCCAGACGAACAGCAGT
CTGCTTCCTCCGCAGAAGAGTACGGACGACAACAACGACACAACCGACGG
AGGCGACGACGACGACATCGTTACCACCGAAAAGACCGCGATAACAGCAG
CACTCCACGGTTCCGACGTATGCGGGCAGAGCTGTCTGCGAACCTGGACG
CCTGGCGCATGAGAAGACGACGTGCTAGAGAAACTACCCCCGCGGCAGCG
ATAGTAATACGACGCCACCTGACCCAGCTCACAGCCCAGCTCTCGGAACT
CACGGGCGAAGGGTTCCGCAGGGCAGAAAGACTCTTGTCCACGGCGAACG
CCTCCGGCAATGTCGGCATCCGAATCGCAGGCTGCGCAGAGTTGTTGCGC
CGGCGCGCCCGGGAACTGCTTCTGCTGGGCCTACGGAAGAAGCAGAAGAA
CCTCGACGGCTTGGGCGGAGAGGGGAAGCTGGGGAAGGGTGAGGAGGCCG
AGGCGGAGCGGAGAAAGATGAGGGAGCTGCGGCTGGTCACCGACAAGATC
GTGCAGAACGTGGTGGATGTCGTTGCGCGGGATGGGTGGGAGGTGGTCGT
CGAGCGGGAGGGGGTGGTCGTGCACCGGCAGTACCTCGCGCTTGGCCCCG
ACGGCACACCGGAGGCGCCGGCGGCGCCGGCGCAGGCCGCAGGAGCTCCT
AAGGCGGAGGTTTCTTCGGCGTTTGTCGGGGGAAGGGTCGAGGGCTCCGC
CGATGATCCCGCTGCGGTAGGCGACGATAGCGTCAAGGCCAAACCCCCGC
AGTTCGCGTGCGTGAAGGCGAGCGCCATCCTCTCCGTTCCCCCTGAGGTG
GTGTACCTCCTGTTCGCCGACAACTCGAGGGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11371:2..1234-

>mRNA_E-fasciculatus_F_contig11371.1100.1 ID=mRNA_E-fasciculatus_F_contig11371.1100.1|Name=mRNA_E-fasciculatus_F_contig11371.1100.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2466bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11371:2..1234- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGTAGTACAGGGAGCACGCGGGCGAGAGGCAGAGAGGGAGAAACCCTTAT
GCTTCGAGAGCGGGTGGCCATTCTGGCCGCAACGCTGCTCTTGTTGAAGT
GTCACTCGATGTCGGGGGGTGCCACTGCTGGTGCATTACCTGATCAACAA
CAGCGTCGGCGACATGTCCCGCACCACGGCGGCTCTACTCCCCAACGAGC
GCAGGACTTCGGAAGCCAGTACCCTCAGACAGGAAGGTTCGAGGCGCGGC
ACAAGAGGGGACTTGTTTTAGACGATGAACCGGCGGGCGAGGAATGGGAA
GAGGCCGATCGCGAGTGTTGGAGTGCCACCATAGCAGCGATAGTCGCTTC
CGGGTCGACGCTTGCCCTTCAACGAACACCCAGGCCAGACGAACAGCAGT
CTGCTTCCTCCGCAGAAGAGTACGGACGACAACAACGACACAACCGACGG
AGGCGACGACGACGACATCGTTACCACCGAAAAGACCGCGATAACAGCAG
CACTCCACGGTTCCGACGTATGCGGGCAGAGCTGTCTGCGAACCTGGACG
CCTGGCGCATGAGAAGACGACGTGCTAGAGAAACTACCCCCGCGGCAGCG
ATAGTAATACGACGCCACCTGACCCAGCTCACAGCCCAGCTCTCGGAACT
CACGGGCGAAGGGTTCCGCAGGGCAGAAAGACTCTTGTCCACGGCGAACG
CCTCCGGCAATGTCGGCATCCGAATCGCAGGCTGCGCAGAGTTGTTGCGC
CGGCGCGCCCGGGAACTGCTTCTGCTGGGCCTACGGAAGAAGCAGAAGAA
CCTCGACGGCTTGGGCGGAGAGGGGAAGCTGGGGAAGGGTGAGGAGGCCG
AGGCGGAGCGGAGAAAGATGAGGGAGCTGCGGCTGGTCACCGACAAGATC
GTGCAGAACGTGGTGGATGTCGTTGCGCGGGATGGGTGGGAGGTGGTCGT
CGAGCGGGAGGGGGTGGTCGTGCACCGGCAGTACCTCGCGCTTGGCCCCG
ACGGCACACCGGAGGCGCCGGCGGCGCCGGCGCAGGCCGCAGGAGCTCCT
AAGGCGGAGGTTTCTTCGGCGTTTGTCGGGGGAAGGGTCGAGGGCTCCGC
CGATGATCCCGCTGCGGTAGGCGACGATAGCGTCAAGGCCAAACCCCCGC
AGTTCGCGTGCGTGAAGGCGAGCGCCATCCTCTCCGTTCCCCCTGAGGTG
GTGTACCTCCTGTTCGCCGACAACTCGAGGGTGCGTAGTACAGGGAGCAC
GCGGGCGAGAGGCAGAGAGGGAGAAACCCTTATGCTTCGAGAGCGGGTGG
CCATTCTGGCCGCAACGCTGCTCTTGTTGAAGTGTCACTCGATGTCGGGG
GGTGCCACTGCTGGTGCATTACCTGATCAACAACAGCGTCGGCGACATGT
CCCGCACCACGGCGGCTCTACTCCCCAACGAGCGCAGGACTTCGGAAGCC
AGTACCCTCAGACAGGAAGGTTCGAGGCGCGGCACAAGAGGGGACTTGTT
TTAGACGATGAACCGGCGGGCGAGGAATGGGAAGAGGCCGATCGCGAGTG
TTGGAGTGCCACCATAGCAGCGATAGTCGCTTCCGGGTCGACGCTTGCCC
TTCAACGAACACCCAGGCCAGACGAACAGCAGTCTGCTTCCTCCGCAGAA
GAGTACGGACGACAACAACGACACAACCGACGGAGGCGACGACGACGACA
TCGTTACCACCGAAAAGACCGCGATAACAGCAGCACTCCACGGTTCCGAC
GTATGCGGGCAGAGCTGTCTGCGAACCTGGACGCCTGGCGCATGAGAAGA
CGACGTGCTAGAGAAACTACCCCCGCGGCAGCGATAGTAATACGACGCCA
CCTGACCCAGCTCACAGCCCAGCTCTCGGAACTCACGGGCGAAGGGTTCC
GCAGGGCAGAAAGACTCTTGTCCACGGCGAACGCCTCCGGCAATGTCGGC
ATCCGAATCGCAGGCTGCGCAGAGTTGTTGCGCCGGCGCGCCCGGGAACT
GCTTCTGCTGGGCCTACGGAAGAAGCAGAAGAACCTCGACGGCTTGGGCG
GAGAGGGGAAGCTGGGGAAGGGTGAGGAGGCCGAGGCGGAGCGGAGAAAG
ATGAGGGAGCTGCGGCTGGTCACCGACAAGATCGTGCAGAACGTGGTGGA
TGTCGTTGCGCGGGATGGGTGGGAGGTGGTCGTCGAGCGGGAGGGGGTGG
TCGTGCACCGGCAGTACCTCGCGCTTGGCCCCGACGGCACACCGGAGGCG
CCGGCGGCGCCGGCGCAGGCCGCAGGAGCTCCTAAGGCGGAGGTTTCTTC
GGCGTTTGTCGGGGGAAGGGTCGAGGGCTCCGCCGATGATCCCGCTGCGG
TAGGCGACGATAGCGTCAAGGCCAAACCCCCGCAGTTCGCGTGCGTGAAG
GCGAGCGCCATCCTCTCCGTTCCCCCTGAGGTGGTGTACCTCCTGTTCGC
CGACAACTCGAGGGTG
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