mRNA_E-fasciculatus_F_contig1137.1097.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female
|
Overview
Homology
BLAST of mRNA_E-fasciculatus_F_contig1137.1097.1 vs. uniprot
Match: D7FIQ7_ECTSI (GRAM domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FIQ7_ECTSI) HSP 1 Score: 1375 bits (3560), Expect = 0.000e+0 Identity = 856/979 (87.44%), Postives = 873/979 (89.17%), Query Frame = 1
Query: 55 MASAGSFVHGTGAASEERLLRQSKEEQDIADFMSSIDXXXXXXXXXX--LRGG-SSAGDGGDIFLGSLSPPALQQATSTSAAGELGADDGKAIAEAFPADWLNDFEGLGLGVEGKTGSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQQHRDATIQSIETEEILGAEPEILDNVDGGYGSGAAAAGMLMSAGGRMVSWAANTPASLVDAATGAFRGDAHHAVSRNAGDDLGNGSAAAASA-ADELPLDWQGTLDMVGMAEAETDATKGTSALAAAPVSELPSLPPPAAREGSFPDFVEIRDPRNVSQFPKPDNALVAKAAGGAXXXXXXXXXXXAGDSGEHAAA-GQEHGQRQVLPAPLRTVEVYLRPDVTWESVSDVYMAVMLSRGLVVRHQTEKMVTAEKSADAPGDWATVKLTVGVTRDKLRTLVIQFYADTR-QAPILSFAGTIARFSGRTGDDLYTAIRDVLVERQMPLSFLATDAEEVSLDPHYVRDLVGMYAHENVVNLTRYALPLEEFVRQEEERLARLEATLMPQYRANGLAPPRPTRSKPLSAYPLTTRRPPVSSCGVEEAREVMERAREHARGGGNYFPPQKQGVDVDDENVFASGGXXXXXXXXXXXXEXXXXXXXXXSSSMAEGIRSLIRATWEDVKEWCDEEAEARVRRKDAQVRDRLLAVEGHREALIAALRDGAGGSAASSTVAGREFAARFRPMAKEAVLCQCKAVHAKRVGQLYLTCNHVCFHSSVLGFTSQRVLPLLTVATISHASSVLGMDLVTLVDRGGEEHSFGITAVEAGFPERFHDLLKQCLVLCKADASRRAAQREGAAASEREPDEEQILARVQRLAKAKQLXXXXXXXXXXXXXXXXXXXXVAAAAVDMASPAASPHSRPGYPRPEESEVAERDTGASVGGGVVEGGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRGGGGRSGSMMAMGIQAFLQESQKRS 2973
MASAGSFVHGTGA SEER+ RQSKEEQDIADFMSSID LRGG SS G GGDIFLGSLSPPALQQ T TSAAGEL ADDGKAIA+AFPADWLNDFEG+GLGV+GKT SS XXXXXXXXXXXXXXX Q HRDATIQ+ ET E+LG EP+ILDNVD GYGSGAAAAGMLMSAGGRMVSWAANTPASLVDAATGAFRGDAHHAVSRNAG DLGNGSAAAAS ADELPLDWQGTLDMVGMAEAETD TKGTSALA APVSELPSLPPPAAREG FPDFVEIRDPRNVSQFPKPDNALVAKAA G A +SGEHAAA GQE GQR VLPAPLRTVEVYLRPDVTWESVSDVYM VMLSRGLVVRHQTEKMVTAEKSADAPGDWATVKLTVGVTRDKLRTLVIQFYADTR QAPILS AGTIARFSGRTGDDLYTAIR+VLVERQMPLSFLATDAEEVSLDPHYVRDLVGMYAHENVVNLTRYALPLEEFVRQEEERLARLEATL+PQYRA GLAPPRPTRSKPLSAYPLTTRRPPVS+CGVEEAREVMERAREH RGGG+ FPPQK GVDVDDENVFASGGXXXXXXXXXX + SS+AEGIRSLIRATWEDVKEWCDEEAEARVRRKDAQVRDRLLAVEGHREALIAALRDGAGGSAASST AGREFAARFRPMAKEAVLCQCKAVHAKRVGQLYLTCNHVCFHSSVLGFTSQRVLPLLTVATISHASSVLGMDL+TLVDRGG+EHSFGITAVEAGFPERFHDLLKQCLVLCKADASRRAAQREGAAASEREPDEEQILARVQRLAKAKQL XXXXXXXXXXXXXXXXXXX DMA PAASPHSRPGYPRPEESE AERDTGASVGGGVVEGGA XXXXXXXXXXXXXXXXXXXXXXXXXXXX RSGSMMAMGIQAFL+ESQKRS
Sbjct: 1 MASAGSFVHGTGA-SEERV-RQSKEEQDIADFMSSIDDTASGGSTTTSVLRGGRSSVGKGGDIFLGSLSPPALQQVTGTSAAGELLADDGKAIADAFPADWLNDFEGIGLGVQGKTDSSAASATATAQPIHSSPQGQXXXXXXXXXXXXXXXXQ-HRDATIQNNETGEVLGEEPQILDNVDEGYGSGAAAAGMLMSAGGRMVSWAANTPASLVDAATGAFRGDAHHAVSRNAGGDLGNGSAAAASTDADELPLDWQGTLDMVGMAEAETD-TKGTSALAVAPVSELPSLPPPAAREGGFPDFVEIRDPRNVSQFPKPDNALVAKAAAGGGGDGQAGQG--AXESGEHAAAAGQERGQRHVLPAPLRTVEVYLRPDVTWESVSDVYMGVMLSRGLVVRHQTEKMVTAEKSADAPGDWATVKLTVGVTRDKLRTLVIQFYADTRKQAPILSLAGTIARFSGRTGDDLYTAIRNVLVERQMPLSFLATDAEEVSLDPHYVRDLVGMYAHENVVNLTRYALPLEEFVRQEEERLARLEATLLPQYRACGLAPPRPTRSKPLSAYPLTTRRPPVSACGVEEAREVMERAREHVRGGGDSFPPQK-GVDVDDENVFASGGXXXXXXXXXX--DEGRGAKVGSGSSVAEGIRSLIRATWEDVKEWCDEEAEARVRRKDAQVRDRLLAVEGHREALIAALRDGAGGSAASSTPAGREFAARFRPMAKEAVLCQCKAVHAKRVGQLYLTCNHVCFHSSVLGFTSQRVLPLLTVATISHASSVLGMDLLTLVDRGGQEHSFGITAVEAGFPERFHDLLKQCLVLCKADASRRAAQREGAAASEREPDEEQILARVQRLAKAKQLRXXXXXXXXXXXXXXXXXXXXXXXX-DMAPPAASPHSRPGYPRPEESEFAERDTGASVGGGVVEGGAGGAMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSGSMMAMGIQAFLEESQKRS 969
BLAST of mRNA_E-fasciculatus_F_contig1137.1097.1 vs. uniprot
Match: A0A7S2F8A2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F8A2_9STRA) HSP 1 Score: 57.8 bits (138), Expect = 1.780e-5 Identity = 44/131 (33.59%), Postives = 68/131 (51.91%), Query Frame = 1
Query: 1975 LIRATWEDVKEWCDEEAEARVRRKDAQVRDRLLAVEGHREALIAALRDGAGGSAASSTVAGREFAARFRPMAKEAVLCQCKAVHAK-----RVGQLYLTCNHVCFHS--SVLGFTSQRVLPLLTVATISHA 2346
++RA W + C+EEA AR+ RK V RL A+EG+R A+++ L + + + R F RFR +A EA+L C AV + R G++Y+T H+ F +L +Q +P T+ I A
Sbjct: 69 VVRALWRLLGSKCEEEARARMARKQKVVTQRLQAIEGYRSAVVSKLANRSQQNRTELIGVERAFRGRFR-VADEALLVDCAAVVTEADGKQRKGRVYVTMGHLWFDDPGGLLTSPTQTPIPFYTIHEIGKA 198 The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1137.1097.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig1137.1097.1 >prot_E-fasciculatus_F_contig1137.1097.1 ID=prot_E-fasciculatus_F_contig1137.1097.1|Name=mRNA_E-fasciculatus_F_contig1137.1097.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=974bp MASAGSFVHGTGAASEERLLRQSKEEQDIADFMSSIDDTTSGGSTSVLRGback to top mRNA from alignment at E-fasciculatus_F_contig1137:7220..13568- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E-fasciculatus_F_contig1137.1097.1 ID=mRNA_E-fasciculatus_F_contig1137.1097.1|Name=mRNA_E-fasciculatus_F_contig1137.1097.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=6349bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1137:7220..13568- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1137:7220..13568- >mRNA_E-fasciculatus_F_contig1137.1097.1 ID=mRNA_E-fasciculatus_F_contig1137.1097.1|Name=mRNA_E-fasciculatus_F_contig1137.1097.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=5844bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1137:7220..13568- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)back to top |