mRNA_E-fasciculatus_F_contig1137.1096.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1137.1096.1
Unique NamemRNA_E-fasciculatus_F_contig1137.1096.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1137.1096.1 vs. uniprot
Match: A0A6H5JAJ0_9PHAE (OHCU_decarbox domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JAJ0_9PHAE)

HSP 1 Score: 363 bits (933), Expect = 1.310e-121
Identity = 183/192 (95.31%), Postives = 188/192 (97.92%), Query Frame = 2 
Query:   47 MEALQALPRHELRQELLRCCHSNAWADAVLGRMPFKSEEEARAAMDDCWAKLSPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEEKEQAAAAGASEAVLDQLSELNEEYRQKNGFVFLVCASGLPADAILALLKARLPNDRDTEIRNAVEEQRKITQLRFARLLAEISPPAIAGGISETNTRSTPSGSSRL 622
            MEALQALPRHELRQELLRCCHSNAWADAVLGRMPFKSEEEA+AAMDDCWAKLSPADYLEAVAAHPAIGDKQALRDKFAPSRSGWE+KEQAAAAGASEAVLD+LSELNEEYRQKNGFVFLVCASG+PADAILALLKARLPNDRDTEIRNAVEEQRKITQLRFARLL EISPPAIAGG S+TN RSTPSG SRL
Sbjct:    1 MEALQALPRHELRQELLRCCHSNAWADAVLGRMPFKSEEEAQAAMDDCWAKLSPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEDKEQAAAAGASEAVLDELSELNEEYRQKNGFVFLVCASGMPADAILALLKARLPNDRDTEIRNAVEEQRKITQLRFARLLMEISPPAIAGGGSDTNKRSTPSGGSRL 192
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BLAST of mRNA_E-fasciculatus_F_contig1137.1096.1 vs. uniprot
Match: A0A835YUP2_9STRA (Putative OHCU decarboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUP2_9STRA)

HSP 1 Score: 157 bits (397), Expect = 7.640e-42
Identity = 85/167 (50.90%), Postives = 103/167 (61.68%), Query Frame = 2 
Query:   44 SMEALQALPRHELRQELLRCCHSNAWADAVLGRMPFKSEEEARAAMDDCWAKLSPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEEKEQAAAAGASEAVLDQLSELNEEYRQKNGFVFLVCASGLPADAILALLKARLPNDRDTEIRNAVEEQRKITQLRFARLLA 544
            +M  L ALP    R ELLRCC  N WAD VL  MPF SE +AR  +D CWA + P ++LEA +AHP IG       K     SGWE +EQ  AA A + VL  L E N +Y  K GFVFL+CA+G  AD +LA L+AR  +   TE+  A EE RKITQ+RF +LLA
Sbjct:    7 AMSLLNALPPQRARAELLRCCTCNRWADEVLRHMPFSSESQARNTLDACWAAMGPQEWLEAFSAHPRIGAGGGDHKK----PSGWEAEEQKGAATAGQQVLQGLREWNRKYDDKFGFVFLICATGKSADEMLAALRARYHHHASTEMAVAAEEHRKITQIRFTKLLA 169
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BLAST of mRNA_E-fasciculatus_F_contig1137.1096.1 vs. uniprot
Match: A0A2W4HVW3_9BACT (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase n=1 Tax=Candidatus Melainabacteria bacterium TaxID=2052166 RepID=A0A2W4HVW3_9BACT)

HSP 1 Score: 150 bits (378), Expect = 3.620e-39
Identity = 79/167 (47.31%), Postives = 111/167 (66.47%), Query Frame = 2 
Query:   47 MEALQALPRHELRQELLRCCHSNAWADAVLGRMPFKSEEEARAAMDDCWAKLSPADYLEAVAAHPAIG-DKQALRDKFAPSRSGWEEKEQAAAAGASEAVLDQLSELNEEYRQKNGFVFLVCASGLPADAILALLKARLPNDRDTEIRNAVEEQRKITQLRFARLLA 544
            +E L A    E  ++L RCC S  W + +L R PF+S +E  +A DD W KL+P D+LEA A HP IG D +ALR KFA S + W E EQ   + A+E VL  LS+LN+EY +K G++F+VCA+G  A  +L +LK+RL ND+D E++ A  EQ KIT++R  +L++
Sbjct:    9 LETLNAKSASEAAEDLERCCGSRVWVEKMLSRRPFQSVDELFSAADDIWFKLAPEDWLEAFAHHPRIGGDVEALRAKFA-STASWAENEQKGVSQATEDVLHALSKLNDEYFEKYGYIFIVCATGKSARQMLDILKSRLLNDKDNELKVAAGEQAKITKIRLEKLIS 174
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BLAST of mRNA_E-fasciculatus_F_contig1137.1096.1 vs. uniprot
Match: A0A836Q8N7_9BACT (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase n=1 Tax=Candidatus Melainabacteria bacterium TaxID=2052166 RepID=A0A836Q8N7_9BACT)

HSP 1 Score: 146 bits (368), Expect = 9.890e-38
Identity = 75/166 (45.18%), Postives = 111/166 (66.87%), Query Frame = 2 
Query:   47 MEALQALPRHELRQELLRCCHSNAWADAVLGRMPFKSEEEARAAMDDCWAKLSPADYLEAVAAHPAIG-DKQALRDKFAPSRSGWEEKEQAAAAGASEAVLDQLSELNEEYRQKNGFVFLVCASGLPADAILALLKARLPNDRDTEIRNAVEEQRKITQLRFARLL 541
            ++ L      +  ++L RCC S+AW + +L R PF S +E  +A DD W KL+  D+LEA A HP IG D +ALR KFA S + W E EQ   + A+E VL QL++LN++Y +K G++F+VCA+G  A+ +L +LK RLPND++ E++ A  EQ KIT++R  +L+
Sbjct:    9 LKTLNTKSAKDAAEDLERCCGSHAWVEKMLTRRPFHSVDELFSAADDIWFKLAAEDWLEAFAHHPRIGGDVEALRAKFA-STASWAENEQRGVSQATEDVLHQLAKLNDDYFEKYGYIFIVCATGKSAEEMLEILKGRLPNDKEKELKVAAGEQAKITKIRLEKLI 173
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BLAST of mRNA_E-fasciculatus_F_contig1137.1096.1 vs. uniprot
Match: A0A848LKZ2_9DELT (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase n=3 Tax=Pyxidicoccus TaxID=224458 RepID=A0A848LKZ2_9DELT)

HSP 1 Score: 143 bits (360), Expect = 1.190e-36
Identity = 77/166 (46.39%), Postives = 100/166 (60.24%), Query Frame = 2 
Query:   47 MEALQALPRHELRQELLRCCHSNAWADAVLGRMPFKSEEEARAAMDDCWAKLSPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEEKEQAAAAGASEAVLDQLSELNEEYRQKNGFVFLVCASGLPADAILALLKARLPNDRDTEIRNAVEEQRKITQLRFARLLA 544
            +E L  +   E R ELLRCC S+ WAD ++   PF+  E   A     W +  P D+ EA+  HP IGD   LR KFA S + W  +EQ    GA EAVL  L++ N EY ++ GF+FLVCA+G  A  +LALL+ RL N  D E+R A EEQ KIT++R  +LLA
Sbjct:    4 LERLNKMMSSEARAELLRCCGSSRWADGMVRSRPFRDAEHLLAEAAWLWKQTGPEDWREAITHHPRIGDVSQLRAKFA-STATWSSQEQGGVVGADEAVLQGLADGNAEYERRFGFIFLVCATGKSAAEMLALLRERLDNSPDEELRIAAEEQAKITRIRLEKLLA 168
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BLAST of mRNA_E-fasciculatus_F_contig1137.1096.1 vs. uniprot
Match: A0A6L3EM52_9PROT (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A6L3EM52_9PROT)

HSP 1 Score: 140 bits (352), Expect = 1.570e-35
Identity = 74/166 (44.58%), Postives = 100/166 (60.24%), Query Frame = 2 
Query:   44 SMEALQALPRHELRQELLRCCHSNAWADAVLGRMPFKSEEEARAAMDDCWAKLSPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEEKEQAAAAGASEAVLDQLSELNEEYRQKNGFVFLVCASGLPADAILALLKARLPNDRDTEIRNAVEEQRKITQLRFARLL 541
            ++++   LP H++R  L  CC +  W D +L R PF+   +   A  D W ++S  D+LEA AAHP IGD  +LR+K+A +R      EQAA  GA    L ++  LN EY  + GF+F+V ASG  A  +L LLKAR+ N RD E+RNA  EQ KIT LR  RL+
Sbjct:    2 TVDSFNRLPEHQVRARLTDCCAAARWVDLMLARRPFRDAGDVARAARDAWMQMSTRDWLEAFAAHPRIGDIDSLREKYASTRE-MAGGEQAAVGGADVDTLREIGRLNREYENRFGFIFIVFASGKSAVEMLELLKARIDNTRDQELRNAAAEQLKITLLRLDRLV 166
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BLAST of mRNA_E-fasciculatus_F_contig1137.1096.1 vs. uniprot
Match: UPI001987D1AE (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase n=1 Tax=Leptolyngbya sp. TaxID=47254 RepID=UPI001987D1AE)

HSP 1 Score: 140 bits (352), Expect = 1.990e-35
Identity = 70/154 (45.45%), Postives = 101/154 (65.58%), Query Frame = 2 
Query:   83 RQELLRCCHSNAWADAVLGRMPFKSEEEARAAMDDCWAKLSPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEEKEQAAAAGASEAVLDQLSELNEEYRQKNGFVFLVCASGLPADAILALLKARLPNDRDTEIRNAVEEQRKITQLRFARLLA 544
            RQEL +CC S++W + +L   PF+S +      DD W KL+PAD+LEA   HP IGDK +L  KFA + + W E EQ     A E  L+ L++LN++Y +K G++F+VCA+G  A  +L+LLK RLPN    E++ A +EQ KIT++R  +LL+
Sbjct:   23 RQELTKCCGSSSWVNRMLEARPFQSAQSIIECADDIWFKLAPADWLEAFTHHPKIGDKASLEAKFATT-AHWAENEQKGVNNADETQLEDLAQLNDQYFEKFGYIFIVCATGKTAGEMLSLLKERLPNLPSEELKIAAKEQSKITKIRLEKLLS 175
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BLAST of mRNA_E-fasciculatus_F_contig1137.1096.1 vs. uniprot
Match: UPI0003826855 (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase n=1 Tax=Hahella ganghwensis TaxID=286420 RepID=UPI0003826855)

HSP 1 Score: 139 bits (351), Expect = 2.110e-35
Identity = 70/166 (42.17%), Postives = 103/166 (62.05%), Query Frame = 2 
Query:   44 SMEALQALPRHELRQELLRCCHSNAWADAVLGRMPFKSEEEARAAMDDCWAKLSPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEEKEQAAAAGASEAVLDQLSELNEEYRQKNGFVFLVCASGLPADAILALLKARLPNDRDTEIRNAVEEQRKITQLRFARLL 541
            S++ L      E +   ++CC S+AW + +    P+++ +    A D  WA+L   DYLEA   HP IGD  +LR K+A +++     EQ+  + A+E  L  L+E N  Y +K GF+F+VCA+G  A+ +L LL  RLPNDR+TE+RNA EEQRKITQ+R  +L+
Sbjct:    2 SLDTLNQQSTEEAKHTFMQCCTSSAWVERMTATRPYQNADSLFEAADRHWAELGEPDYLEAFEGHPKIGDVNSLRAKYANTKA-LAGAEQSGVSAATEQTLQALAEGNTAYEEKFGFIFIVCATGKSAEEMLELLNQRLPNDRETELRNAAEEQRKITQIRLGKLV 166
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BLAST of mRNA_E-fasciculatus_F_contig1137.1096.1 vs. uniprot
Match: UPI00199ADACE (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase n=1 Tax=Candidatus Sericytochromatia bacterium TaxID=2762020 RepID=UPI00199ADACE)

HSP 1 Score: 139 bits (349), Expect = 4.460e-35
Identity = 76/165 (46.06%), Postives = 101/165 (61.21%), Query Frame = 2 
Query:   47 MEALQALPRHELRQELLRCCHSNAWADAVLGRMPFKSEEEARAAMDDCWAKLSPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEEKEQAAAAGASEAVLDQLSELNEEYRQKNGFVFLVCASGLPADAILALLKARLPNDRDTEIRNAVEEQRKITQLRFARLL 541
            +EAL  L     R+ L RCC ++ W D +L   PF ++     A D  WA    +D+LEA   +P IGD+ + R KFA S + W   EQ+ A+ A+EAVL  LS+ N  Y  K GF+F+VCA+G  AD +LALL+ARLPNDR TE++ A  EQ KIT LR  + L
Sbjct:    4 VEALTGLTEPAWREMLTRCCGASHWVDGMLVLRPFSTDTALMKAADQVWAGTGESDWLEAFTHYPKIGDRDSRRQKFA-STAEWASHEQSGASAANEAVLTALSDGNLNYEAKFGFIFIVCATGKSADEMLALLQARLPNDRATELQIAAGEQHKITLLRLEKWL 167
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BLAST of mRNA_E-fasciculatus_F_contig1137.1096.1 vs. uniprot
Match: UPI0018AF5575 (2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase n=1 Tax=Hymenobacter properus TaxID=2791026 RepID=UPI0018AF5575)

HSP 1 Score: 138 bits (347), Expect = 8.590e-35
Identity = 77/168 (45.83%), Postives = 104/168 (61.90%), Query Frame = 2 
Query:   44 SMEALQALPRHELRQELLRCCHSNAWADAVLGRMPFKSEEEARAAMDDCWAKLSPADYLEAVAAHPAIG-DKQALRDKFAPSRSGWEEKEQAAAAGASEAVLDQLSELNEEYRQKNGFVFLVCASGLPADAILALLKARLPNDRDTEIRNAVEEQRKITQLRFARLLA 544
            +++ L  LP+  L + L +CC S AW + ++ R P    E         W  LS AD+ EA   HP IG D  ALR+KFA S S W E EQA+   AS+A L+ L+  NEEY QK G++F+VCA+G  AD +LALL+AR+PN+ + EI  A  EQ KIT++R  +LLA
Sbjct:    2 TIQELNNLPKSVLAEALQKCCGSTAWVENIVARFPVADAEALMQQATTVWNSLSEADWREAFTHHPKIGGDVAALREKFA-STSTWAEGEQASVKQASQATLEALATGNEEYEQKFGYIFIVCATGKTADEMLALLQARMPNNPEDEILIAAGEQDKITRIRLEKLLA 168
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1137.1096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JAJ0_9PHAE1.310e-12195.31OHCU_decarbox domain-containing protein n=2 Tax=Ec... [more]
A0A835YUP2_9STRA7.640e-4250.90Putative OHCU decarboxylase n=1 Tax=Tribonema minu... [more]
A0A2W4HVW3_9BACT3.620e-3947.312-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline deca... [more]
A0A836Q8N7_9BACT9.890e-3845.182-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline deca... [more]
A0A848LKZ2_9DELT1.190e-3646.392-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline deca... [more]
A0A6L3EM52_9PROT1.570e-3544.582-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline deca... [more]
UPI001987D1AE1.990e-3545.452-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline deca... [more]
UPI00038268552.110e-3542.172-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline deca... [more]
UPI00199ADACE4.460e-3546.062-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline deca... [more]
UPI0018AF55758.590e-3545.832-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline deca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1137contigE-fasciculatus_F_contig1137:2266..6719 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score357.8
Seed ortholog evalue3.1e-96
Seed eggNOG ortholog2880.D7FIQ6
KEGG rclassRC01551,RC03393
KEGG koko:K07127,ko:K13484
KEGG TC9.B.35.1.2,9.B.35.1.3,9.B.35.2
KEGG ReactionR06601,R06604
KEGG Pathwayko00230,ko01100,ko01120,map00230,map01100,map01120
KEGG ModuleM00546
GOsGO:0000255,GO:0001558,GO:0001560,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005777,GO:0005829,GO:0005886,GO:0006139,GO:0006144,GO:0006725,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009058,GO:0009112,GO:0009605,GO:0009719,GO:0009725,GO:0009741,GO:0009742,GO:0009755,GO:0009898,GO:0009987,GO:0009991,GO:0010033,GO:0014070,GO:0016020,GO:0016043,GO:0016787,GO:0016810,GO:0016812,GO:0016829,GO:0016830,GO:0016831,GO:0017144,GO:0018130,GO:0019428,GO:0019897,GO:0019898,GO:0022607,GO:0023052,GO:0031234,GO:0031668,GO:0032870,GO:0033971,GO:0033993,GO:0034641,GO:0040008,GO:0042221,GO:0042579,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043401,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044444,GO:0044459,GO:0044464,GO:0046483,GO:0048545,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0051716,GO:0051997,GO:0055086,GO:0065003,GO:0065007,GO:0070887,GO:0071310,GO:0071367,GO:0071383,GO:0071396,GO:0071407,GO:0071495,GO:0071496,GO:0071704,GO:0071840,GO:0071944,GO:0072521,GO:0098552,GO:0098562,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901700,GO:1901701
EggNOG free text desc.thyroid hormone binding
EggNOG OGsCOG2351@1,KOG3006@2759
EC3.5.2.17,4.1.1.97
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko02000
Hectar predicted targeting categoryother localisation
Exons5
Model size1578
Cds size579
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927646.3920214-UTR-E-fasciculatus_F_contig1137:2265..23111622927646.3920214-UTR-E-fasciculatus_F_contig1137:2265..2311Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1137 2266..2311 +
1695995633.3304217-UTR-E-fasciculatus_F_contig1137:2265..23111695995633.3304217-UTR-E-fasciculatus_F_contig1137:2265..2311Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1137 2266..2311 +
1622927646.4743462-UTR-E-fasciculatus_F_contig1137:5766..67191622927646.4743462-UTR-E-fasciculatus_F_contig1137:5766..6719Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1137 5767..6719 +
1695995633.404624-UTR-E-fasciculatus_F_contig1137:5766..67191695995633.404624-UTR-E-fasciculatus_F_contig1137:5766..6719Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1137 5767..6719 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927646.4133935-CDS-E-fasciculatus_F_contig1137:2311..23641622927646.4133935-CDS-E-fasciculatus_F_contig1137:2311..2364Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1137 2312..2364 +
1695995633.3520024-CDS-E-fasciculatus_F_contig1137:2311..23641695995633.3520024-CDS-E-fasciculatus_F_contig1137:2311..2364Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1137 2312..2364 +
1622927646.4270818-CDS-E-fasciculatus_F_contig1137:3757..38701622927646.4270818-CDS-E-fasciculatus_F_contig1137:3757..3870Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1137 3758..3870 +
1695995633.3655064-CDS-E-fasciculatus_F_contig1137:3757..38701695995633.3655064-CDS-E-fasciculatus_F_contig1137:3757..3870Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1137 3758..3870 +
1622927646.4374154-CDS-E-fasciculatus_F_contig1137:4340..44651622927646.4374154-CDS-E-fasciculatus_F_contig1137:4340..4465Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1137 4341..4465 +
1695995633.3780959-CDS-E-fasciculatus_F_contig1137:4340..44651695995633.3780959-CDS-E-fasciculatus_F_contig1137:4340..4465Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1137 4341..4465 +
1622927646.4511275-CDS-E-fasciculatus_F_contig1137:4779..49231622927646.4511275-CDS-E-fasciculatus_F_contig1137:4779..4923Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1137 4780..4923 +
1695995633.3870187-CDS-E-fasciculatus_F_contig1137:4779..49231695995633.3870187-CDS-E-fasciculatus_F_contig1137:4779..4923Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1137 4780..4923 +
1622927646.4645176-CDS-E-fasciculatus_F_contig1137:5622..57661622927646.4645176-CDS-E-fasciculatus_F_contig1137:5622..5766Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1137 5623..5766 +
1695995633.3961065-CDS-E-fasciculatus_F_contig1137:5622..57661695995633.3961065-CDS-E-fasciculatus_F_contig1137:5622..5766Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1137 5623..5766 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1137.1096.1prot_E-fasciculatus_F_contig1137.1096.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1137 2312..5766 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1137.1096.1

>prot_E-fasciculatus_F_contig1137.1096.1 ID=prot_E-fasciculatus_F_contig1137.1096.1|Name=mRNA_E-fasciculatus_F_contig1137.1096.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=193bp
MEALQALPRHELRQELLRCCHSNAWADAVLGRMPFKSEEEARAAMDDCWA
KLSPADYLEAVAAHPAIGDKQALRDKFAPSRSGWEEKEQAAAAGASEAVL
DQLSELNEEYRQKNGFVFLVCASGLPADAILALLKARLPNDRDTEIRNAV
EEQRKITQLRFARLLAEISPPAIAGGISETNTRSTPSGSSRL*
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mRNA from alignment at E-fasciculatus_F_contig1137:2266..6719+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1137.1096.1 ID=mRNA_E-fasciculatus_F_contig1137.1096.1|Name=mRNA_E-fasciculatus_F_contig1137.1096.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4454bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1137:2266..6719+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCCATCACCAGCAGCCAGGCCTCAGTCACTTTTCCCTGCCGGCTCCATGG
AGGCGTTGCAGGCGTTGCCACGCCATGAGCTGCGGCAAGAGCTCCTCAGG
TATCTGCTATGGTTGATTGCCTCCAGGTATCAAGATCGAGAAAATGAACG
TACGTCTACAGTACTACACTACTGCATCATGGTTGACGTTGTCAAATGTC
GTTAGTACGGACGGTGACTCGTCAACACTGCTGTGCACAAGACACATATG
CACGTGACGCAGTATAGCACCCCCTCATTTTGGAGAAGGTGTCAAGTTTC
AAGCCCGTTTTTTGTTTTCATAGCAACACAGGAGGCCCTGATTTTAGAAG
TATCGTGTAGAAAACTTTGTCTACTGCTGTAGGTCTCTGTGAAACCTGGC
GATGCTGTCGTTGTAACGAAATCGGGTGTCGCTGAAGCTATTGAAAACTC
CGCAGGGGGGGTGGTATACTGCATCACAAAGAGGTACATGTAGAGTGTTG
TGCAGAGAGAATACAATTGTATATTGCAGCATACATACTTGAGTACAGTG
AAGCTTTCTTGGACTTCCCACCAGTTTGGGTGTATCAAATAACTGGTCTT
GGTAGTCAACGGTTGCGATTTTTTGCCGCGTATTCGATGGAGAACTCAAT
GTTTCTTGGTCGCTGTGGGGGCAGGACTTCCTGTGTATCCCATTGAAGTA
GTGCAACGCTTGAAAATGGCGGCGGCTTCACTATTGCTGCACTTATTTCT
GTAACTAATTGTTACGCAATCACGATCCATCCGCAAAATCGCGATGTTTG
CTACTCTTGCTTCCCTTTGTTGAATGAGACACCTGTCGTCCTTTGCGCAA
TTCGGTTTTTGGTTTGCAAACCAAAACCAAAAATGAATGACTTCCAAAGA
CGCACATCTTCAGCATCCAGCAACAGGCGTGGATTTGGAGTGTTCTGTTC
GTAAGGACGACGACATATTTAAAGTTCTTCGCCAAGAGTGGCAAAAATGC
CTCTGTTGGGCCGAGGTATTGCTACGGCCGTTTCATGCATACGATGATCA
ATTATTGGTGGCAGCCGGTGATCCATTGTGCGTACGTTCGAATCAGACTC
GAAGTCTTTGGCCAAACCCCAGCATGCAAACAGACATGCTGCAGACCAGA
GCACACGTCCTGGTACAAACTAGCACGAGAGTGTCACCTATTTCAATGGA
GTTTGACGCCAGCGAAGCACGGCCACACCCAACCCTTGTGTACAAGCGGC
CAAGTTGAACCCCGAACGACTAATGTATCAGCAATGGCGTGGCCCTAGAC
GAGACGTTTGCTCACACAAATAGCCCTTTGGTGTATATCCAAGGCTTTAC
CAGGTGCTAGCCCCCCTCCCCCGACCGCGAGATGTCCCGCACTGCGCGGT
TTCTAGCAAGCCCGGCATTGCCGTACAAGGGTTCGCCAGTGTCGGTGACC
CGACCCACGCCCACGCGCTACGTACTGCCTTCCCTACGTCAGGTGCTGCC
ATTCCAACGCGTGGGCGGACGCGGTTTTGGGCAGGATGCCTTTCAAGTCC
GAGGAGGAAGCTCGAGCGGCGATGGATGATTGCTGGGCCAAGCTATCGCC
AGCCGGTGCGGTGCGCTGCCCCGCGCGACAGCAGTCCGTTGTGTGTTGGA
AAAGCGGGGCCTCCGTTGGGCGGGGGTTGAGTCTGAACGAGTGTACGACA
AAGTTTTTTCGAGATGATGAGGGTGTGGTGCAGGATGGATGCTACCTCCA
CCAGAGCGCCGGTCGCCGGAACTTTCGGCTTTCGAGCGCGCTCGTCGCGA
AATACTGCCGCTTCATGCCGTTGAGTCAAAGCCCTCGCCCCCTCTGAAAA
CGAGTCGGCCTTTTAGGTGTGCTTATTCTCGCTCTAACGCAGTATTCAGC
CTTAGACCCGCGACACCAAAGCAAACCAACTATCCAACGGAAGCTCCAAA
GACCCCCGCCTTTTTCGGAAGCAACGCACCGCTTCGTTCAGGTCTCATCC
GCCATCATCGCGTGGAGTTAAGCGTAAAATTTCCGAAATGTAACGCGTAA
GGATGTGTGGCGATGAATCCGGCAGATTACTTGGAGGCGGTCGCGGCGCA
CCCGGCCATCGGAGACAAGCAGGCGTTGCGGGACAAGTTCGCCCCTTCGA
GGTCCGGGTGGGAAGAGAAAGAACAAGCGGCGGCAGCAGGGGCGAGCGAG
GTATTGTACGGTGTTTCATCGACATCTTTACTTCTGTGCCGTGCGTGCCA
CGCTTGGTTTATCGAGGGGACGCGAATGAAGCTGCTCTCATCAGCTCGAA
CCAATGGCTCATTTCTTGGCAGGCCCATACAAGGGTTTGGGCAAGGGTTT
GTCACCCGCCTAGGAGGTTGCAGGATGAGCAGATATAGCAACTGTTGGCG
CGTTCTCTAGATGAGTGATGTTGAGCACCGCGGGACCAGAACCATGCACC
CCTACGCTACCCGCCCCGCCCCATGCGCGACTTTTCTTGCGTTAATGGTG
ATGATGGTGACAAGGCCGTCCTAGACCAGCTTTCCGAGCTGAACGAGGAA
TACCGACAGAAGAACGGTTTCGTCTTTCTTGTCTGCGCCTCGGGCCTGCC
CGCGGATGCGATTCTGGCCCTGCTGAAGGCGCGCTTGCCTAACGACAGGG
ATACAGAGGTGAACCGGAGATTGGGCGGCATACAGTGAGGTGGACTGCAT
GTGTCGGTCGGGGGGAGGGTGTTCATAGTGTTGCTTTGCTGAGGCGTTTG
ACCTTGAGCAACGCAGCTCTTTTGGTGCGGGGCACCGTTCCTTTTCCTAC
GCACCCCACCGGCAACGTTCGGGCGATGTTTGTGCTCCTGCCGTGCTCTC
CATGGCATCTCCTTGTTAATCTTGTTCCCGTTCCTTGTTGGGTACAGTAC
TTGCACAAGGGGAGCTGGGGTATCAATTTGGCGCTTGCCTGCCTTGATTG
CTCCGATCGTTTTCCTCGCCCCCCTTTCTGAGTCTCAAGGGCAAGGGTGG
TTTTTTGTTTTTTCAAAAGAAGCAGTCTAGCGCACCTTCCCGCGGATGGT
GTGTAGTGTTACGGTGAACAGAGGAAGCGAGGCGAAGGGGTTTGCGGCGA
GTTGCGAGGACCTGAGTTTGGGGGGGGAAAGGATGCGTCGTTTGTACGCA
CGAAACGCTGCCCACACGAGATACGCCCCGAACCGTGCTCTTGCTGATGG
CTGGTGCGTGTGCGTAAACCAGAACGCTTAGTAGTGCGCCAACAGACGCT
GGCCGCGGGCTGTTTGAAGGTTTATCCCACCTACCCGCCCGCCCTCGTGC
GCGCGTGGCTGCTGATGACTGCTGTTGCTGTCGTTTTTCGTGTGCTCCAT
GAAGCAGATTCGAAACGCGGTCGAAGAGCAACGGAAGATCACTCAGCTTC
GGTTTGCTCGACTCCTCGCGGAAATATCACCGCCTGCCATCGCTGGGGGG
ATTAGCGAAACAAATACAAGGTCAACACCTTCTGGTAGTTCGCGACTGTA
GAACCATCATTTAACTCTTGTCGTTGTTTGCTCGGTTGGTGGATTTACGA
AACACTTTGTCCCCGCCTCCGTACATAAGGTAGCTAAATTGCGGGCACGC
TGTATCTATCCACACAATTCACGCGGACAGCTGTCTTGTACAGGGTGGCG
TGGGCTATGTTCTGGGCGACATACTAGTATTCGCATGTGTTTTTGATGTT
GTCCTATGATTTTGTGCCACGGTTCCGAACAGCATTGTTTGGAGTAGCGA
TGTGCTGGGGCAGGTTATCATTTTTGTGTATGATTTACCGCCGTGGTTAG
TGTGTTTGTGAAGAAACCTAAGGCAGAGGAACCAAAGCACTGCTGGTTGT
GGCAGCTCCAGAGGGATGGCCCGCGCTTCTCGATTAATTGGTTTGTATTT
CATCCGGGGATGATTCAAAGTTGGTTCAATTGTCGTTCTCTCGCCGAGTT
AGCTAGCAATGTTTTTTGTACCGTGGTTTCTGCCTCTCCTTTTATCTGTG
TCTCTGCATGTACTTGCACCGTTCCTGCTGTGCTTTCGTCGCAGATAAGA
CGAGAAACATTCGATGCCAAAGGCTGCCGCGGCTAAGTTTCGTACCTGAA
CTTCTTCCCAGCAGCGGAGGATTTTTTCTCTCCAGACCGCGTGGATGACC
TGTTCCACCTAGCCTCGGTTAGCTCTATGCTTGTAAATCAGAAGACACAT
GTAGTGTGCTCGAATTGTACAATCGTTTTTGCGTTCAACCTCTGGAGAAA
CCAATACCGTCACCGGTGTCATTTTTGGCGCTGTTTGGCGTATCGTTCTT
CCGGTGTTTGTTGTGCCTCCGTCTTAGATGCACATTTCACCATACCAACA
TCTTACGCCATCTCAGGGTTCGCGCGCCGCGCTTGTGGCGGTGGCTCTCT
TGCCGCTTGCTGTGCGCAACATGTGTTTGGTCCAGGGAGCCCCCTTTCTC
GGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1137:2266..6719+

>mRNA_E-fasciculatus_F_contig1137.1096.1 ID=mRNA_E-fasciculatus_F_contig1137.1096.1|Name=mRNA_E-fasciculatus_F_contig1137.1096.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1158bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1137:2266..6719+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGAGGCGTTGCAGGCGTTGCCACGCCATGAGCTGCGGCAAGAGCTCCT
CAGATGGAGGCGTTGCAGGCGTTGCCACGCCATGAGCTGCGGCAAGAGCT
CCTCAGGTGCTGCCATTCCAACGCGTGGGCGGACGCGGTTTTGGGCAGGA
TGCCTTTCAAGTCCGAGGAGGAAGCTCGAGCGGCGATGGATGATTGCTGG
GCCAAGCTATCGCCAGCCGGTGCTGCCATTCCAACGCGTGGGCGGACGCG
GTTTTGGGCAGGATGCCTTTCAAGTCCGAGGAGGAAGCTCGAGCGGCGAT
GGATGATTGCTGGGCCAAGCTATCGCCAGCCGATTACTTGGAGGCGGTCG
CGGCGCACCCGGCCATCGGAGACAAGCAGGCGTTGCGGGACAAGTTCGCC
CCTTCGAGGTCCGGGTGGGAAGAGAAAGAACAAGCGGCGGCAGCAGGGGC
GAGCGAGATTACTTGGAGGCGGTCGCGGCGCACCCGGCCATCGGAGACAA
GCAGGCGTTGCGGGACAAGTTCGCCCCTTCGAGGTCCGGGTGGGAAGAGA
AAGAACAAGCGGCGGCAGCAGGGGCGAGCGAGGCCGTCCTAGACCAGCTT
TCCGAGCTGAACGAGGAATACCGACAGAAGAACGGTTTCGTCTTTCTTGT
CTGCGCCTCGGGCCTGCCCGCGGATGCGATTCTGGCCCTGCTGAAGGCGC
GCTTGCCTAACGACAGGGATACAGAGGCCGTCCTAGACCAGCTTTCCGAG
CTGAACGAGGAATACCGACAGAAGAACGGTTTCGTCTTTCTTGTCTGCGC
CTCGGGCCTGCCCGCGGATGCGATTCTGGCCCTGCTGAAGGCGCGCTTGC
CTAACGACAGGGATACAGAGATTCGAAACGCGGTCGAAGAGCAACGGAAG
ATCACTCAGCTTCGGTTTGCTCGACTCCTCGCGGAAATATCACCGCCTGC
CATCGCTGGGGGGATTAGCGAAACAAATACAAGGTCAACACCTTCTGGTA
GTTCGCGACTGTAGATTCGAAACGCGGTCGAAGAGCAACGGAAGATCACT
CAGCTTCGGTTTGCTCGACTCCTCGCGGAAATATCACCGCCTGCCATCGC
TGGGGGGATTAGCGAAACAAATACAAGGTCAACACCTTCTGGTAGTTCGC
GACTGTAG
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