mRNA_E-fasciculatus_F_contig1137.1098.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1137.1098.1
Unique NamemRNA_E-fasciculatus_F_contig1137.1098.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1137.1098.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1137contigE-fasciculatus_F_contig1137:9333..9693 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size363
Cds size339
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927646.3523288-UTR-E-fasciculatus_F_contig1137:9332..93541622927646.3523288-UTR-E-fasciculatus_F_contig1137:9332..9354Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1137 9333..9354 +
1695995633.3097074-UTR-E-fasciculatus_F_contig1137:9332..93541695995633.3097074-UTR-E-fasciculatus_F_contig1137:9332..9354Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig1137 9333..9354 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927646.3617084-CDS-E-fasciculatus_F_contig1137:9354..96931622927646.3617084-CDS-E-fasciculatus_F_contig1137:9354..9693Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1137 9355..9693 +
1695995633.319572-CDS-E-fasciculatus_F_contig1137:9354..96931695995633.319572-CDS-E-fasciculatus_F_contig1137:9354..9693Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1137 9355..9693 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1137.1098.1prot_E-fasciculatus_F_contig1137.1098.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1137 9355..9693 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1137.1098.1

>prot_E-fasciculatus_F_contig1137.1098.1 ID=prot_E-fasciculatus_F_contig1137.1098.1|Name=mRNA_E-fasciculatus_F_contig1137.1098.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=113bp
MHDKGRRPETMCKYRWGNAKEVGVEPEGVAGLISRQKRDDPPVKPSPTCV
LGKYLPANQHFRHTTPEALEAMETQAPSQENQRRLFLFNGSIAGISLPII
LPPAPPCPTKTRF
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mRNA from alignment at E-fasciculatus_F_contig1137:9333..9693+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1137.1098.1 ID=mRNA_E-fasciculatus_F_contig1137.1098.1|Name=mRNA_E-fasciculatus_F_contig1137.1098.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=361bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1137:9333..9693+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGCTGGAGCGACGGGCGGACGGATGCACGATAAGGGGCGGCGGCCGGAAA
CAATGTGTAAATATCGCTGGGGAAATGCTAAAGAAGTCGGGGTGGAACCA
GAGGGAGTCGCTGGCTTAATTTCCCGGCAAAAACGGGATGATCCGCCTGT
CAAGCCTTCTCCTACTTGTGTTCTGGGCAAATACCTACCCGCAAACCAAC
ATTTCCGACATACCACGCCCGAAGCTCTTGAGGCCATGGAAACCCAAGCA
CCAAGCCAGGAAAATCAACGACGTCTATTTTTATTCAACGGCAGTATTGC
CGGTATATCTTTGCCAATAATCTTGCCTCCCGCCCCCCCCTGCCCAACCA
AAACACGTTTC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1137:9333..9693+

>mRNA_E-fasciculatus_F_contig1137.1098.1 ID=mRNA_E-fasciculatus_F_contig1137.1098.1|Name=mRNA_E-fasciculatus_F_contig1137.1098.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=678bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1137:9333..9693+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCACGATAAGGGGCGGCGGCCGGAAACAATGTGTAAATATCGCTGGGG
AAATGCTAAAGAAGTCGGGGTGGAACCAGAGGGAGTCGCTGGCTTAATTT
CCCGGCAAAAACGGGATGATCCGCCTGTCAAGCCTTCTCCTACTTGTGTT
CTGGGCAAATACCTACCCGCAAACCAACATTTCCGACATACCACGCCCGA
AGCTCTTGAGGCCATGGAAACCCAAGCACCAAGCCAGGAAAATCAACGAC
GTCTATTTTTATTCAACGGCAGTATTGCCGGTATATCTTTGCCAATAATC
TTGCCTCCCGCCCCCCCCTGCCCAACCAAAACACGTTTCATGCACGATAA
GGGGCGGCGGCCGGAAACAATGTGTAAATATCGCTGGGGAAATGCTAAAG
AAGTCGGGGTGGAACCAGAGGGAGTCGCTGGCTTAATTTCCCGGCAAAAA
CGGGATGATCCGCCTGTCAAGCCTTCTCCTACTTGTGTTCTGGGCAAATA
CCTACCCGCAAACCAACATTTCCGACATACCACGCCCGAAGCTCTTGAGG
CCATGGAAACCCAAGCACCAAGCCAGGAAAATCAACGACGTCTATTTTTA
TTCAACGGCAGTATTGCCGGTATATCTTTGCCAATAATCTTGCCTCCCGC
CCCCCCCTGCCCAACCAAAACACGTTTC
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