mRNA_E-fasciculatus_F_contig11369.1095.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11369.1095.1
Unique NamemRNA_E-fasciculatus_F_contig11369.1095.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11369.1095.1 vs. uniprot
Match: A0A6H5JCS9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCS9_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 9.750e-50
Identity = 85/88 (96.59%), Postives = 86/88 (97.73%), Query Frame = 1 
Query:    1 VSRKISSYIYADVTAGRLGPDEGMQYREALAEELLNSYGGRCSLCSCELVWAVYSERQPTLDRLDCSLPHTVDNVDVKCLRCNRARVS 264
            V RKISSYIYADVTAGRLGPDEGMQ+REALAEELLNSYGGRCSLCSCELVWAVYSERQPTLDRLDCSLPHTVDNVDVKCLRCNRAR S
Sbjct: 1355 VYRKISSYIYADVTAGRLGPDEGMQHREALAEELLNSYGGRCSLCSCELVWAVYSERQPTLDRLDCSLPHTVDNVDVKCLRCNRARGS 1442
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BLAST of mRNA_E-fasciculatus_F_contig11369.1095.1 vs. uniprot
Match: A0A6H5K992_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K992_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 4.230e-46
Identity = 81/89 (91.01%), Postives = 83/89 (93.26%), Query Frame = 1 
Query:    1 VSRKISSYIYADVTAGRLGPDEGMQYREALAEELLNSYGGRCSLCSCELVWAVYSERQPTLDRLDCSLPHTVDNVDVKCLRCNRARVSR 267
            VSRKISSYIYADVTAGRL PDEGMQ+REALAEELLNSYGGRC LCSCELVWAVYSERQPTLDRLDCSLPHT DN DVK LRCNRAR S+
Sbjct: 1205 VSRKISSYIYADVTAGRLEPDEGMQHREALAEELLNSYGGRCCLCSCELVWAVYSERQPTLDRLDCSLPHTPDNADVKFLRCNRARGSQ 1293
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BLAST of mRNA_E-fasciculatus_F_contig11369.1095.1 vs. uniprot
Match: A0A6H5JMH4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH4_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 1.470e-45
Identity = 80/90 (88.89%), Postives = 85/90 (94.44%), Query Frame = 1 
Query:    1 VSRKISSYIYADVTAGRLGPDEGMQYREAL-AEELLNSYGGRCSLCSCELVWAVYSERQPTLDRLDCSLPHTVDNVDVKCLRCNRARVSR 267
            VSRK+SSYIYADVTAGRLGPDEGMQ+REAL AE+LLNSYGGRC LCSCELVWAVYSERQPTLDRLDCSLP+  DNVDVKCLRCNRAR S+
Sbjct: 1416 VSRKVSSYIYADVTAGRLGPDEGMQHREALLAEDLLNSYGGRCCLCSCELVWAVYSERQPTLDRLDCSLPNIADNVDVKCLRCNRARGSQ 1505
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BLAST of mRNA_E-fasciculatus_F_contig11369.1095.1 vs. uniprot
Match: A0A6H5L909_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L909_9PHAE)

HSP 1 Score: 162 bits (409), Expect = 2.260e-44
Identity = 74/88 (84.09%), Postives = 83/88 (94.32%), Query Frame = 1 
Query:    1 VSRKISSYIYADVTAGRLGPDEGMQYREALAEELLNSYGGRCSLCSCELVWAVYSERQPTLDRLDCSLPHTVDNVDVKCLRCNRARVS 264
            VSRK+SS+IYADVTAGRLGP+EG ++REAL +ELLNSYGGRC+LC+CELVWAVYSERQPTLDRLDCSLPHT +NVD KCLRCNRAR S
Sbjct:  715 VSRKVSSFIYADVTAGRLGPEEGGRHREALVQELLNSYGGRCNLCTCELVWAVYSERQPTLDRLDCSLPHTAENVDAKCLRCNRARGS 802
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BLAST of mRNA_E-fasciculatus_F_contig11369.1095.1 vs. uniprot
Match: A0A6H5KSM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM3_9PHAE)

HSP 1 Score: 159 bits (402), Expect = 2.110e-43
Identity = 73/88 (82.95%), Postives = 81/88 (92.05%), Query Frame = 1 
Query:    1 VSRKISSYIYADVTAGRLGPDEGMQYREALAEELLNSYGGRCSLCSCELVWAVYSERQPTLDRLDCSLPHTVDNVDVKCLRCNRARVS 264
            VSRK+SSYIYADV AGRLGP+EG ++REAL +ELLNSYGGRC  C+CELVWAVYSE+QPTLDRLDCSLPHT +NVDVKCLRCNRAR S
Sbjct: 1320 VSRKVSSYIYADVAAGRLGPEEGRRHREALVQELLNSYGGRCHRCTCELVWAVYSEQQPTLDRLDCSLPHTAENVDVKCLRCNRARGS 1407
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BLAST of mRNA_E-fasciculatus_F_contig11369.1095.1 vs. uniprot
Match: A0A6H5L0U3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0U3_9PHAE)

HSP 1 Score: 149 bits (377), Expect = 4.900e-42
Identity = 70/88 (79.55%), Postives = 79/88 (89.77%), Query Frame = 1 
Query:    1 VSRKISSYIYADVTAGRLGPDEGMQYREALAEELLNSYGGRCSLCSCELVWAVYSERQPTLDRLDCSLPHTVDNVDVKCLRCNRARVS 264
            VSRK+SSYIYADV A RLG DEG Q+REAL +EL  SYGGRC+LC+ +LVWAVYSERQPTLDRLDC+LPHT+DNVDVKCL+CNRAR S
Sbjct:  275 VSRKVSSYIYADVAAERLGSDEGGQHREALVQELHRSYGGRCNLCNHDLVWAVYSERQPTLDRLDCALPHTIDNVDVKCLKCNRARGS 362
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BLAST of mRNA_E-fasciculatus_F_contig11369.1095.1 vs. uniprot
Match: A0A6H5JTY9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTY9_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 8.730e-42
Identity = 68/88 (77.27%), Postives = 82/88 (93.18%), Query Frame = 1 
Query:    1 VSRKISSYIYADVTAGRLGPDEGMQYREALAEELLNSYGGRCSLCSCELVWAVYSERQPTLDRLDCSLPHTVDNVDVKCLRCNRARVS 264
            VSRK+SSY+YADVTAGRLGP+EG ++REAL +ELLNSYGGRC+LC+CE++WA++SER P LDRLDCSLP+T +NVDVKCLRCNRAR S
Sbjct: 1130 VSRKVSSYVYADVTAGRLGPEEGGRHREALVQELLNSYGGRCNLCTCEIIWAIFSERHPMLDRLDCSLPNTAENVDVKCLRCNRARGS 1217
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BLAST of mRNA_E-fasciculatus_F_contig11369.1095.1 vs. uniprot
Match: D7FQN9_ECTSI (Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2879 RepID=D7FQN9_ECTSI)

HSP 1 Score: 149 bits (375), Expect = 9.210e-40
Identity = 69/88 (78.41%), Postives = 78/88 (88.64%), Query Frame = 1 
Query:    1 VSRKISSYIYADVTAGRLGPDEGMQYREALAEELLNSYGGRCSLCSCELVWAVYSERQPTLDRLDCSLPHTVDNVDVKCLRCNRARVS 264
            +S K+SSYIYADV A RLG DEG QYREAL +EL  SYGGRC+LC+ +LVWAVYSERQPTLDRLDC+LPHT+DNVDVKCL+CNRAR S
Sbjct: 1149 ISGKVSSYIYADVAAERLGSDEGGQYREALVQELQRSYGGRCNLCNHDLVWAVYSERQPTLDRLDCALPHTIDNVDVKCLKCNRARGS 1236
[Close]
BLAST of mRNA_E-fasciculatus_F_contig11369.1095.1 vs. uniprot
Match: A0A6H5KWL4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWL4_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 7.330e-39
Identity = 68/88 (77.27%), Postives = 77/88 (87.50%), Query Frame = 1 
Query:    1 VSRKISSYIYADVTAGRLGPDEGMQYREALAEELLNSYGGRCSLCSCELVWAVYSERQPTLDRLDCSLPHTVDNVDVKCLRCNRARVS 264
            VSRK+SSYIYADV A RLG DEG Q+REAL +EL  SYGGRC+LC+ EL+W VYSERQPTLDRLDC+LPHT+ NVDVKCL+CNRAR S
Sbjct:  720 VSRKVSSYIYADVAAERLGSDEGGQHREALVQELHRSYGGRCNLCNHELIWTVYSERQPTLDRLDCALPHTIGNVDVKCLKCNRARGS 807
[Close]
BLAST of mRNA_E-fasciculatus_F_contig11369.1095.1 vs. uniprot
Match: A0A6H5JCI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCI8_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 2.060e-38
Identity = 66/86 (76.74%), Postives = 77/86 (89.53%), Query Frame = 1 
Query:    1 VSRKISSYIYADVTAGRLGPDEGMQYREALAEELLNSYGGRCSLCSCELVWAVYSERQPTLDRLDCSLPHTVDNVDVKCLRCNRAR 258
            VSRK+S+YIYADV+A RL  DEG Q+++AL EELLNSY GRCSLC CELVWA+YSERQPTLDRLDC+LPHT+ NVDV CL+C+RAR
Sbjct: 1290 VSRKVSNYIYADVSAERLSADEGGQHKQALVEELLNSYWGRCSLCYCELVWALYSERQPTLDRLDCALPHTIGNVDVNCLKCSRAR 1375
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11369.1095.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JCS9_9PHAE9.750e-5096.59Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K992_9PHAE4.230e-4691.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JMH4_9PHAE1.470e-4588.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L909_9PHAE2.260e-4484.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSM3_9PHAE2.110e-4382.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L0U3_9PHAE4.900e-4279.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JTY9_9PHAE8.730e-4277.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FQN9_ECTSI9.210e-4078.41Uncharacterized protein n=4 Tax=Ectocarpus TaxID=2... [more]
A0A6H5KWL4_9PHAE7.330e-3977.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JCI8_9PHAE2.060e-3876.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11369contigE-fasciculatus_F_contig11369:2484..2750 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score147.9
Seed ortholog evalue2.2e-33
Seed eggNOG ortholog2880.D7FQN9
EggNOG OGs2E3IK@1,2SAKM@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons1
Model size267
Cds size267
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927646.3192298-CDS-E-fasciculatus_F_contig11369:2483..27501622927646.3192298-CDS-E-fasciculatus_F_contig11369:2483..2750Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11369 2484..2750 +
1695995633.2967944-CDS-E-fasciculatus_F_contig11369:2483..27501695995633.2967944-CDS-E-fasciculatus_F_contig11369:2483..2750Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11369 2484..2750 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11369.1095.1prot_E-fasciculatus_F_contig11369.1095.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11369 2484..2750 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11369.1095.1

>prot_E-fasciculatus_F_contig11369.1095.1 ID=prot_E-fasciculatus_F_contig11369.1095.1|Name=mRNA_E-fasciculatus_F_contig11369.1095.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=89bp
VSRKISSYIYADVTAGRLGPDEGMQYREALAEELLNSYGGRCSLCSCELV
WAVYSERQPTLDRLDCSLPHTVDNVDVKCLRCNRARVSR
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mRNA from alignment at E-fasciculatus_F_contig11369:2484..2750+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11369.1095.1 ID=mRNA_E-fasciculatus_F_contig11369.1095.1|Name=mRNA_E-fasciculatus_F_contig11369.1095.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=267bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11369:2484..2750+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTTCTCGGAAGATTTCAAGCTACATCTACGCCGACGTTACGGCCGGCCG
TCTTGGACCAGACGAGGGTATGCAGTATAGGGAAGCTCTTGCCGAAGAGC
TCCTGAACTCGTACGGAGGTAGATGCAGCCTTTGCTCATGTGAGCTTGTC
TGGGCCGTTTACAGCGAACGCCAACCGACTCTCGACCGCCTTGACTGCTC
TTTGCCTCACACTGTTGACAATGTGGATGTCAAGTGCCTGAGGTGCAATC
GCGCTCGTGTTAGCCGG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11369:2484..2750+

>mRNA_E-fasciculatus_F_contig11369.1095.1 ID=mRNA_E-fasciculatus_F_contig11369.1095.1|Name=mRNA_E-fasciculatus_F_contig11369.1095.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=534bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11369:2484..2750+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GTTTCTCGGAAGATTTCAAGCTACATCTACGCCGACGTTACGGCCGGCCG
TCTTGGACCAGACGAGGGTATGCAGTATAGGGAAGCTCTTGCCGAAGAGC
TCCTGAACTCGTACGGAGGTAGATGCAGCCTTTGCTCATGTGAGCTTGTC
TGGGCCGTTTACAGCGAACGCCAACCGACTCTCGACCGCCTTGACTGCTC
TTTGCCTCACACTGTTGACAATGTGGATGTCAAGTGCCTGAGGTGCAATC
GCGCTCGTGTTAGCCGGGTTTCTCGGAAGATTTCAAGCTACATCTACGCC
GACGTTACGGCCGGCCGTCTTGGACCAGACGAGGGTATGCAGTATAGGGA
AGCTCTTGCCGAAGAGCTCCTGAACTCGTACGGAGGTAGATGCAGCCTTT
GCTCATGTGAGCTTGTCTGGGCCGTTTACAGCGAACGCCAACCGACTCTC
GACCGCCTTGACTGCTCTTTGCCTCACACTGTTGACAATGTGGATGTCAA
GTGCCTGAGGTGCAATCGCGCTCGTGTTAGCCGG
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