mRNA_E-fasciculatus_F_contig11367.1094.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11367.1094.1
Unique NamemRNA_E-fasciculatus_F_contig11367.1094.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11367.1094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11367contigE-fasciculatus_F_contig11367:2..1712 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size841
Cds size582
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11367.1094.1prot_E-fasciculatus_F_contig11367.1094.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11367 259..1712 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927646.1252618-UTR-E-fasciculatus_F_contig11367:1..2581622927646.1252618-UTR-E-fasciculatus_F_contig11367:1..258Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11367 2..258 -
1695995633.2564688-UTR-E-fasciculatus_F_contig11367:1..2581695995633.2564688-UTR-E-fasciculatus_F_contig11367:1..258Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11367 2..258 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927646.1377192-CDS-E-fasciculatus_F_contig11367:258..7781622927646.1377192-CDS-E-fasciculatus_F_contig11367:258..778Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11367 259..778 -
1695995633.2659082-CDS-E-fasciculatus_F_contig11367:258..7781695995633.2659082-CDS-E-fasciculatus_F_contig11367:258..778Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11367 259..778 -
1622927646.287254-CDS-E-fasciculatus_F_contig11367:1650..17121622927646.287254-CDS-E-fasciculatus_F_contig11367:1650..1712Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11367 1651..1712 -
1695995633.277883-CDS-E-fasciculatus_F_contig11367:1650..17121695995633.277883-CDS-E-fasciculatus_F_contig11367:1650..1712Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11367 1651..1712 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11367.1094.1

>prot_E-fasciculatus_F_contig11367.1094.1 ID=prot_E-fasciculatus_F_contig11367.1094.1|Name=mRNA_E-fasciculatus_F_contig11367.1094.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=194bp
KRQGLRSTASDQRGRSAERGRGYKEGDRQQRSAVTGKGGVSETPPQRAGL
LGGPVIATALSAAPRQDHHPASHRTDEIPHEKRRAFLLGEGGGIRCRRPS
CGFLEISFFPEDAHGSGRKKAGGKGRPLARPQQQLPPPPSVRWGCSERQS
RAAPESERDRRKRKLYLRYIAAHGQESPSLVKNAVLQISERDC*
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mRNA from alignment at E-fasciculatus_F_contig11367:2..1712-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11367.1094.1 ID=mRNA_E-fasciculatus_F_contig11367.1094.1|Name=mRNA_E-fasciculatus_F_contig11367.1094.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1711bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11367:2..1712- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGCGACAAGGACTCAGGAGCACGGCGAGTGATCAGAGAGGACGGAGCGC
AGAACGCGGCAGGTGCGTTCATCCATAGACCTGGTATATGTAAGGATTTG
TAGTAGGGGCGTTCCTTGTGCTCTAAAATCGTGAGTCCTAACCCATACAA
GAGAAAATGCACTCCCGCTCTCGTTCGCGTCTGTCTAGTGCGTCGGGAGC
TACTCTGTACACATCATCCTACCGACTTACTAATCGAGGTCCAGCAGCAG
CAGCAGCAGAGCACCAGTGACGAGGCATAGAAGCTGAAGGCGACCATGCG
TTGGTCTCTGGGAGCTGGGCTCGCATGGACAACCAAGCCCTTCAACCAAC
CCCATGGCTGCTGCCTCTGCTGCTGATGATGATTCTTTACCCGACGCCGC
CGCGCTGTGCACTGCTGTGCACCCGAACCTCAAGATTGCAGTCCCATCCA
GCCCAGCAGGCCGGTTAGTGAGCGATGCATTCGAGAGGATGCACGCACCC
GGCCCCATGCCAGCAGCGCAAGGGTTTGCAGATCATAGTGCGGTTGGCGA
GATTCCGTAGGAATCCAAGGTTGGGCGCCCGGTTGGTTTGGCAGCAGTAC
AAAAGTTGCCTGCTGTGTGCCATCGTTCCCGAAGACACTGCTGTGCGGGA
GGGATGATGAACTGACCTCTCTCCCTTGTTTGTGCAGCGAAGTTTGAACT
GCGCCCCAACGAAACTGCTGGTTAGTAGTACTTTCACGCCTGCCGCCTCG
CCGGTTGTCTTCTGTATGTGGGTGATCAAGCAGCATACAGCGGTGATGGT
CGTGTGGGTTCTCTCTCCATTATGTACTCAGCAGCCCGGTGTGTGTGTGT
GTATGCCCTCGCCGGTATCCTGTCTCCGCCTTTCCCCGCGTGCCCTGGAT
CACTGCCTCGTGTGCCTGACCGACTACACAGCAGAGGGTACAAAGAGGGA
GACAGACAGCAGCGGTCAGCGGTGACGGGGAAGGGGGGTGTAAGCGAGAC
ACCTCCACAGCGCGCGGGACTGCTAGGTGGTCCTGTGATAGCCACAGCGC
TGTCTGCCGCCCCGAGGCAGGACCATCACCCCGCATCACACCGCACCGAC
GAGATCCCGCACGAGAAGAGAAGAGCGTTCCTCCTAGGAGAGGGGGGTGG
CATCCGCTGCCGCCGACCTTCCTGTGGTTTTCTGGAGATTTCTTTTTTCC
CTGAAGACGCCCACGGATCCGGAAGGAAAAAGGCAGGGGGGAAGGGGAGA
CCTCTTGCCCGACCTCAGCAGCAGCTGCCGCCGCCGCCGAGCGTACGGTG
GGGATGCTCCGAGAGGCAATCTAGGGCAGCACCAGAAAGCGAGAGAGATC
GCCGTAAACGAAAGCTTTATCTCCGCTACATAGCGGCACACGGCCAAGAA
TCACCTTCTTTGGTAAAGAACGCCGTTCTTCAAATATCGGAGCGGGATTG
TTGAGCCTGCTGGCGTGATTCTTGCTAGGACGGACGTGGCGGGTGGCTAC
GGCCTGCTACGAGCAGCCGGCACTGCCAGGTTAGTTTCCCCTCGCGCCCG
CAAGAAGGAAGGACAAGTAAAGGCATCAAGATTAGCCCGTGAGTTCACCA
GCCAGCCACCGGCGTTGGGGGCATCTTCGCACGGCATCAGCGATACTGAG
GTAGGAGAAAGGAACGGTGGCGTATCGGGTACGGCGGTGATGGGGGCCGA
TAGCGGGAGAG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11367:2..1712-

>mRNA_E-fasciculatus_F_contig11367.1094.1 ID=mRNA_E-fasciculatus_F_contig11367.1094.1|Name=mRNA_E-fasciculatus_F_contig11367.1094.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1164bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11367:2..1712- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AAGCGACAAGGACTCAGGAGCACGGCGAGTGATCAGAGAGGACGGAGCGC
AGAACGCGGCAGAAGCGACAAGGACTCAGGAGCACGGCGAGTGATCAGAG
AGGACGGAGCGCAGAACGCGGCAGAGGGTACAAAGAGGGAGACAGACAGC
AGCGGTCAGCGGTGACGGGGAAGGGGGGTGTAAGCGAGACACCTCCACAG
CGCGCGGGACTGCTAGGTGGTCCTGTGATAGCCACAGCGCTGTCTGCCGC
CCCGAGGCAGGACCATCACCCCGCATCACACCGCACCGACGAGATCCCGC
ACGAGAAGAGAAGAGCGTTCCTCCTAGGAGAGGGGGGTGGCATCCGCTGC
CGCCGACCTTCCTGTGGTTTTCTGGAGATTTCTTTTTTCCCTGAAGACGC
CCACGGATCCGGAAGGAAAAAGGCAGGGGGGAAGGGGAGACCTCTTGCCC
GACCTCAGCAGCAGCTGCCGCCGCCGCCGAGCGTACGGTGGGGATGCTCC
GAGAGGCAATCTAGGGCAGCACCAGAAAGCGAGAGAGATCGCCGTAAACG
AAAGCTTTATCTCCGCTACATAGCGGCACACGGCCAAGAATCACCTTCTT
TGGTAAAGAACGCCGTTCTTCAAATATCGGAGCGGGATTGTTGAAGGGTA
CAAAGAGGGAGACAGACAGCAGCGGTCAGCGGTGACGGGGAAGGGGGGTG
TAAGCGAGACACCTCCACAGCGCGCGGGACTGCTAGGTGGTCCTGTGATA
GCCACAGCGCTGTCTGCCGCCCCGAGGCAGGACCATCACCCCGCATCACA
CCGCACCGACGAGATCCCGCACGAGAAGAGAAGAGCGTTCCTCCTAGGAG
AGGGGGGTGGCATCCGCTGCCGCCGACCTTCCTGTGGTTTTCTGGAGATT
TCTTTTTTCCCTGAAGACGCCCACGGATCCGGAAGGAAAAAGGCAGGGGG
GAAGGGGAGACCTCTTGCCCGACCTCAGCAGCAGCTGCCGCCGCCGCCGA
GCGTACGGTGGGGATGCTCCGAGAGGCAATCTAGGGCAGCACCAGAAAGC
GAGAGAGATCGCCGTAAACGAAAGCTTTATCTCCGCTACATAGCGGCACA
CGGCCAAGAATCACCTTCTTTGGTAAAGAACGCCGTTCTTCAAATATCGG
AGCGGGATTGTTGA
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