mRNA_E-fasciculatus_F_contig11361.1093.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig11361.1093.1
Unique NamemRNA_E-fasciculatus_F_contig11361.1093.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig11361.1093.1 vs. uniprot
Match: D7FSB1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSB1_ECTSI)

HSP 1 Score: 367 bits (941), Expect = 6.780e-127
Identity = 185/198 (93.43%), Postives = 191/198 (96.46%), Query Frame = 2 
Query:  122 MPVGENNFDRLAKSALKWRPESAERTAWMQVFFSLLTQASSLAAFPSYNVVLGFWGLYSVYTKSLQSTQVYLGLLCFSILLDIIFCSIWGDNEAGIFDGSTATFCLVMLILNMLAKLAAVYCFLRFYKEMEAGAIRPQERLSASPKRGGHQSVGGRGAYDMAPMSTHEERAPIGSPDASLMSSGSAASFALSPKGRAD 715
            MPVGENNFDRLAKSAL+WRPESAERTAWMQVFFSLLTQASSLAAFPSYNVVLG WGLYSVYTKSLQSTQVYLGLLCFSILLDIIFCSIWG N+AGIFDGSTA+FCLVMLILNMLAKLAAVYCFLRFYKEME+GAIRPQERL A  K+GG QS GGRGAYDMAPMSTHEERAP+GSPDASLMSSGSAASFALSPKGRAD
Sbjct:    1 MPVGENNFDRLAKSALRWRPESAERTAWMQVFFSLLTQASSLAAFPSYNVVLGLWGLYSVYTKSLQSTQVYLGLLCFSILLDIIFCSIWGSNDAGIFDGSTASFCLVMLILNMLAKLAAVYCFLRFYKEMESGAIRPQERLGAPAKQGGRQSAGGRGAYDMAPMSTHEERAPVGSPDASLMSSGSAASFALSPKGRAD 198
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BLAST of mRNA_E-fasciculatus_F_contig11361.1093.1 vs. uniprot
Match: A0A835YRK6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRK6_9STRA)

HSP 1 Score: 157 bits (397), Expect = 8.290e-44
Identity = 86/182 (47.25%), Postives = 112/182 (61.54%), Query Frame = 2 
Query:  122 MPVGENNFDRLAKSALKWRPESAERTAWMQVFFSLLTQASSLAAFPSYNVVLGFWGLYSVYTKSLQSTQVYLGLLCFSILLDIIFCSIWGDNEAGIFDGSTATFCLVMLILNMLAKLAAVYCFLRFYK----EMEAGAIRPQER-------LSASPKRGGHQSVGGRGAYDMAPMSTHEERA 634
            M  G N+F+R+ K  L W PE  ER+AW+QVF S+LTQ    A+FPSYNVVLGFWGLY  +T+S Q+   YL  L  SILLDII+CS+WG N+A +FDG TA FCLVMLI NM  K  ++  F + +K    E+   A+RP  R       L  + K GG  SV    A + A ++  ++ A
Sbjct:    1 MAPGVNHFNRIRKELLTWHPEYVERSAWIQVFLSILTQLGGEASFPSYNVVLGFWGLYVAFTRSFQACNCYLWFLAASILLDIIYCSVWGSNKAKVFDGPTAIFCLVMLIFNMGVKAVSLLYFKQLHKTLVAELTDRALRPANRRASINLALKQARKEGGRGSVTEMTAEEAAAVANLQQEA 182
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig11361.1093.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FSB1_ECTSI6.780e-12793.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YRK6_9STRA8.290e-4447.25Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig11361contigE-fasciculatus_F_contig11361:827..3683 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-20_004850.1
Exons5
Model size771
Cds size597
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927646.0124757-UTR-E-fasciculatus_F_contig11361:826..9471622927646.0124757-UTR-E-fasciculatus_F_contig11361:826..947Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11361 827..947 +
1695995633.177804-UTR-E-fasciculatus_F_contig11361:826..9471695995633.177804-UTR-E-fasciculatus_F_contig11361:826..947Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11361 827..947 +
1622927646.0867765-UTR-E-fasciculatus_F_contig11361:3630..36831622927646.0867765-UTR-E-fasciculatus_F_contig11361:3630..3683Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11361 3631..3683 +
1695995633.247749-UTR-E-fasciculatus_F_contig11361:3630..36831695995633.247749-UTR-E-fasciculatus_F_contig11361:3630..3683Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig11361 3631..3683 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927646.025218-CDS-E-fasciculatus_F_contig11361:947..10661622927646.025218-CDS-E-fasciculatus_F_contig11361:947..1066Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11361 948..1066 +
1695995633.191085-CDS-E-fasciculatus_F_contig11361:947..10661695995633.191085-CDS-E-fasciculatus_F_contig11361:947..1066Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11361 948..1066 +
1622927646.0364807-CDS-E-fasciculatus_F_contig11361:1662..17521622927646.0364807-CDS-E-fasciculatus_F_contig11361:1662..1752Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11361 1663..1752 +
1695995633.203964-CDS-E-fasciculatus_F_contig11361:1662..17521695995633.203964-CDS-E-fasciculatus_F_contig11361:1662..1752Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11361 1663..1752 +
1622927646.0480857-CDS-E-fasciculatus_F_contig11361:2310..23731622927646.0480857-CDS-E-fasciculatus_F_contig11361:2310..2373Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11361 2311..2373 +
1695995633.2227123-CDS-E-fasciculatus_F_contig11361:2310..23731695995633.2227123-CDS-E-fasciculatus_F_contig11361:2310..2373Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11361 2311..2373 +
1622927646.0599182-CDS-E-fasciculatus_F_contig11361:2864..31241622927646.0599182-CDS-E-fasciculatus_F_contig11361:2864..3124Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11361 2865..3124 +
1695995633.2328598-CDS-E-fasciculatus_F_contig11361:2864..31241695995633.2328598-CDS-E-fasciculatus_F_contig11361:2864..3124Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11361 2865..3124 +
1622927646.0733366-CDS-E-fasciculatus_F_contig11361:3565..36301622927646.0733366-CDS-E-fasciculatus_F_contig11361:3565..3630Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11361 3566..3630 +
1695995633.240225-CDS-E-fasciculatus_F_contig11361:3565..36301695995633.240225-CDS-E-fasciculatus_F_contig11361:3565..3630Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig11361 3566..3630 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig11361.1093.1prot_E-fasciculatus_F_contig11361.1093.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig11361 948..3630 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig11361.1093.1

>prot_E-fasciculatus_F_contig11361.1093.1 ID=prot_E-fasciculatus_F_contig11361.1093.1|Name=mRNA_E-fasciculatus_F_contig11361.1093.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=199bp
MPVGENNFDRLAKSALKWRPESAERTAWMQVFFSLLTQASSLAAFPSYNV
VLGFWGLYSVYTKSLQSTQVYLGLLCFSILLDIIFCSIWGDNEAGIFDGS
TATFCLVMLILNMLAKLAAVYCFLRFYKEMEAGAIRPQERLSASPKRGGH
QSVGGRGAYDMAPMSTHEERAPIGSPDASLMSSGSAASFALSPKGRAD*
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mRNA from alignment at E-fasciculatus_F_contig11361:827..3683+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig11361.1093.1 ID=mRNA_E-fasciculatus_F_contig11361.1093.1|Name=mRNA_E-fasciculatus_F_contig11361.1093.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2857bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11361:827..3683+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CGAAGACAACCAACGGACGTAACTGCGGAGGGACCAAGACAAGTCGCTGT
GCACAAGGAACGAAGCCACATCACCTCGCGAGCGTCGTTCGTTGCTTTGC
TGGACTACTGTACCAATTAGTATGCCTGTGGGAGAAAACAACTTCGACCG
CCTCGCGAAAAGTGCGCTAAAATGGCGGCCGGAAAGCGCAGAGCGAACGG
CGTGGATGCAGGTCTTTTTCTCGCTCCTAACGCAAGCCAGGTACAATATC
TTGGAAGGCTATGAATCTCAGTTTTATAGCCAAGCCGATCTGTTAAGCTT
CGGATTGTTTGTTGTGGAAACGGGAAGATTACCCGGGAGTACCCGTTTGT
CTGTGCCACCTACATGTAAAGACCACACCACCACCACCACCACCACCACC
ACTCCACCAGCTACTAGAGTATGATTAAAGTTTACCCGAGAGGTCTACGG
TCTAGAACCTACCATCTGTAGCGCCTACAATCTGTGTTTACCTCATGTTG
TTGACTGTTCTACAGAAGGGAGCGGGGCGATACCGAAACTGGCCGTACTT
GACCAATACTACATGTCGGGTGTTGGTTTGATTATGTACTGCTGCGGCAT
CAAGTCGTTTCGCGCTGTGTGGAGCACCACCTAGTCGTCGCTGTGTCAGT
TGTTCGGAAGGCGGCCGAAAAACATGACTGCAGGTGTTGCATCTACACGT
TGTACCTACATAGACGTTGTTTCACAACTCAGTATTTTGGCTTACAAATG
CATACAGCAGATACTGTGGACAGACGCATTAATTTAACTTCTTCTGTAGT
TGCAACCTAAGCTCACCCGTTGTCGTGTATTTGCAGCTCGCTGGCAGCTT
TCCCGTCGTACAACGTGGTTCTGGGGTTCTGGGGATTGTACAGCGTGTAC
ACCAAGAGTCTTCAATCCACCCAAGTGTGAGTTTCTTCTTCTGTTTCAAG
GCACTCTGTAGAGCGAGATAGTCTATACCATAGGTGAGGTGAGCACAATG
CGATGCAGCGAGCCGGTGCTGAACTGACGTAAAAATAAGTCCAAAATGTG
TTGAGGTACGTTTTTAGGTCATTGGTCACGTATTTATCTTTGGCTTCCAT
GGGGCTGACTACTCTCTGCGTGCGCTGCGGTGTGCGGCTTCCATAAGGAA
GGCTGGCCGGTCTCTGTGCCTAGGTTGTACATACAGCAGTGCGCTCGTGC
TTGAGTCCACACAGGGTGTTCGACGGATATTATTACCACCATTCGATCGA
GCAGACCCGGCAACATCCAACAATTGTGAAAAATCAATACTTGTCGGGCT
GCGAAACGCAAAAAAACAGACCATGCATGTCAGACTATAGAGAGAGGTGT
GACGACACACACATCGCGTGCCCTCTTCAAGCGATGTGTGGAACTGCAGC
ATCATCAGGGGTGATTTGCGCCATGTATGCATTCTTATCGTTGGCCTGCC
CGTTCTCGTCCACGTCCCGCGTCGACCGTCGCAGATATCTGGGATTGCTT
TGCTTCTCCATTCTCCTTGACATTATATTCTGCTCCATTTGGGGTGAGTT
TTGACATTTGCGTAGAGAATAAGCCAGCGTGAACATGCTGGACGCGTTTA
AACACCTTTTGCTGCTTGTTGGTCCTGCTCCGGGCATCTAAATGTTGTGG
TGGCTCGGACAACATAATTCACAGAGTTCAAAGGTTACCCGGGGCGTATT
TAGTTTTATCCTCGGTGCCTGCTTAGCTTTTGCTTCAGTGTTTCATGTTT
GGGGCCATCTAAGAGACCATCCCAGGCATGTGCACAGCAAGGTTGCTTCC
TGAAGGTTAATCAAAACACATTTTTCATTTCGACGAAAAGGTTGCCCTTG
ATACACAGGCAGCAGCCACGCACACCGTGCAGTCCATCGCATACTTTCCA
AGTATGTCGTGCGAAACTGCACGTACACGATGCATGCCGGCCTCGATCGA
TCAATGAAGATGTCAGCATGGTGATCGTTTCTGCCTTACGCCTTTGCCAC
GTTTTTCTATGCATGAATGCGTCCTCGCTCAAAGGGAGCAACGAGGCCGG
CATCTTCGACGGATCGACAGCAACGTTTTGCCTCGTCATGCTCATCCTCA
ACATGCTGGCGAAGCTAGCGGCAGTGTACTGCTTCTTGAGATTCTATAAA
GAAATGGAGGCTGGAGCAATCCGCCCCCAAGAGCGTTTGAGTGCCTCCCC
GAAGCGGGGAGGGCATCAGTCGGTGGGAGGGCGTGGCGCGTACGACATGG
CACCAATGTCGACTCACGAAGAGCGGGCTCCCATTGGTTCTCCCGATGGT
GAGAAAGTGGATGTGTTTACGCCTAGAGAAGAGCAAGAGTAGGCCGGGAA
GCGGCCGGAGCCGAGATTGTTCTACTCAGGTGTAGGAAGTCAAAGAAGCC
TGAGCAACGCCACAAGAAGCAGCCCGAGAAAAAAAGTAGCTTGTTTGCTC
CAGTCTGGGTACGGAAAATACCTCATGCAACAAGGTCAACGACGCATCGC
TACCACGGGCTAAACCCTATCGCACGATACAGTATACGCCCCCTTCCGCT
CCCGAATATCTGCTCCGGCGGTGGCTGCTTGTCTTGGATGTTTCCCTCGG
GGTATTTTCTGAGGCCTTGCTTTCACTTACTTGCGGAAGCGTCGACAGGC
ACTGCGTGCCACTTCCTCAAATGGTTCACGTGTCGCTCGTTAATGAAGAT
TGTCCCTTCCCCCTTTTGCGCTGGACGGAACCCTTGCAGCGAGTCTGATG
AGTTCTGGCAGTGCAGCATCGTTTGCACTTTCTCCGAAGGGGAGGGCTGA
CTGAGATAGCGGATCGGACATGACCCTGATGGTAGACGCCAAGGAAGACC
ACGGGCG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig11361:827..3683+

>mRNA_E-fasciculatus_F_contig11361.1093.1 ID=mRNA_E-fasciculatus_F_contig11361.1093.1|Name=mRNA_E-fasciculatus_F_contig11361.1093.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1194bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11361:827..3683+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCTGTGGGAGAAAACAACTTCGACCGCCTCGCGAAAAGTGCGCTAAA
ATGGCGGCCGGAAAGCGCAGAGCGAACGGCGTGGATGCAGGTCTTTTTCT
CGCTCCTAACGCAAGCCAGATGCCTGTGGGAGAAAACAACTTCGACCGCC
TCGCGAAAAGTGCGCTAAAATGGCGGCCGGAAAGCGCAGAGCGAACGGCG
TGGATGCAGGTCTTTTTCTCGCTCCTAACGCAAGCCAGCTCGCTGGCAGC
TTTCCCGTCGTACAACGTGGTTCTGGGGTTCTGGGGATTGTACAGCGTGT
ACACCAAGAGTCTTCAATCCACCCAAGTCTCGCTGGCAGCTTTCCCGTCG
TACAACGTGGTTCTGGGGTTCTGGGGATTGTACAGCGTGTACACCAAGAG
TCTTCAATCCACCCAAGTATATCTGGGATTGCTTTGCTTCTCCATTCTCC
TTGACATTATATTCTGCTCCATTTGGGGTGAATATCTGGGATTGCTTTGC
TTCTCCATTCTCCTTGACATTATATTCTGCTCCATTTGGGGTGACAACGA
GGCCGGCATCTTCGACGGATCGACAGCAACGTTTTGCCTCGTCATGCTCA
TCCTCAACATGCTGGCGAAGCTAGCGGCAGTGTACTGCTTCTTGAGATTC
TATAAAGAAATGGAGGCTGGAGCAATCCGCCCCCAAGAGCGTTTGAGTGC
CTCCCCGAAGCGGGGAGGGCATCAGTCGGTGGGAGGGCGTGGCGCGTACG
ACATGGCACCAATGTCGACTCACGAAGAGCGGGCTCCCATTGGTTCTCCC
GATGCAACGAGGCCGGCATCTTCGACGGATCGACAGCAACGTTTTGCCTC
GTCATGCTCATCCTCAACATGCTGGCGAAGCTAGCGGCAGTGTACTGCTT
CTTGAGATTCTATAAAGAAATGGAGGCTGGAGCAATCCGCCCCCAAGAGC
GTTTGAGTGCCTCCCCGAAGCGGGGAGGGCATCAGTCGGTGGGAGGGCGT
GGCGCGTACGACATGGCACCAATGTCGACTCACGAAGAGCGGGCTCCCAT
TGGTTCTCCCGATGCGAGTCTGATGAGTTCTGGCAGTGCAGCATCGTTTG
CACTTTCTCCGAAGGGGAGGGCTGACTGACGAGTCTGATGAGTTCTGGCA
GTGCAGCATCGTTTGCACTTTCTCCGAAGGGGAGGGCTGACTGA
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