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Homology
BLAST of mRNA_E-fasciculatus_F_contig11360.1092.1 vs. uniprot
Match: D7G4L4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4L4_ECTSI) HSP 1 Score: 149 bits (375), Expect = 1.780e-36 Identity = 86/139 (61.87%), Postives = 93/139 (66.91%), Query Frame = 1
Query: 1 SLEAVGVSPAQHHAXXXXXASLLGHHXXGIGADVGVVG---------------------GGQGGPVGCGGSLRSVKRRSGEEGAGLPQATGGNKRRARASARCQHPGCTTARTFGREGDRQASFCAVHKEEGMINIKGR 354
SLEAVGVSPAQHHA AS G + + G GGQGG VGCGG LRSVKRR+G+ GAG+ QA G NKRRARASARCQ+PGC TARTFGR+GDRQASFCAVHKEEGMINIKGR
Sbjct: 304 SLEAVGVSPAQHHAAAAGGASSPAEGARG--EEYALAGRGAXXXXXXXXXXXXXXXXXXGGQGGAVGCGGPLRSVKRRAGDGGAGISQAAGSNKRRARASARCQYPGCMTARTFGRQGDRQASFCAVHKEEGMINIKGR 440
BLAST of mRNA_E-fasciculatus_F_contig11360.1092.1 vs. uniprot
Match: A0A6H5KKE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KKE2_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 8.090e-11 Identity = 50/85 (58.82%), Postives = 52/85 (61.18%), Query Frame = 1
Query: 1 SLEAVGVSPAQHHAXXXXXAS-------------------LLGHHXXGIGADVGVV--GGGQGGPVGCGGSLRSVKRRSGEEGAG 192
SLEAVGVSPAQHHA AS LLGHH IGADVGVV G GQG PVGCGG LRSVKRR+GE G+G
Sbjct: 349 SLEAVGVSPAQHHAAAAAGASSPAEWARGEESALAGRGAGLLGHHGGVIGADVGVVVGGQGQGDPVGCGGPLRSVKRRAGEGGSG 433
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 6 |
| Model size | 1203 |
| Cds size | 1203 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig11360.1092.1 >prot_E-fasciculatus_F_contig11360.1092.1 ID=prot_E-fasciculatus_F_contig11360.1092.1|Name=mRNA_E-fasciculatus_F_contig11360.1092.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=401bp
SLEAVGVSPAQHHAAGGGGASLLGHHGGGIGADVGVVGGGQGGPVGCGGS
LRSVKRRSGEEGAGLPQATGGNKRRARASARCQHPGCTTARTFGREGDRQ
ASFCAVHKEEGMINIKGRRCHSPGCQHRPGFAMPGEKRGKFCASHRQPGM
IDVVSRKCQVESGDCDRQPVYGWPGERATRCGTHKLERTLTTLATGAAVV
EKMYDVRGKRCQAEGCIRQPGFGHPLKDKGSVRCHEHKLPGMTNVRRRRA
LERQALQQDPAANYQPPNHSQAEILHHQQQQQQQQQQHQQQKQEQQAGDP
STHSQPDGDEQKPLAGCHAGGYAEQQTCAVVEDSSAMAATASAAAVFAVG
GHPTPHPSSLGGNVVKSIPVSILPRPAAAIAPLGTPAAASVQVGGYAAFP
P back to topmRNA from alignment at E-fasciculatus_F_contig11360:3..4471- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig11360.1092.1 ID=mRNA_E-fasciculatus_F_contig11360.1092.1|Name=mRNA_E-fasciculatus_F_contig11360.1092.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=4469bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11360:3..4471- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCCCTCGAAGCGGTCGGTGTCTCTCCCGCTCAGCACCACGCCGCTGGGGG
GGGGGGTGCGAGTCTGCTGGGACATCACGGGGGTGGGATTGGCGCGGATG
TCGGCGTGGTCGGGGGTGGGCAAGGGGGCCCCGTGGGGTGCGGGGGATCG
TTACGGTCGGTCAAGAGACGGTCGGGAGAGGAAGGTGCGTGCAGCGCGGG
TGTGTCGAGTCGGGCTTGTCGCTCGAGAGATTGGGCGTGGCTGTACGCTT
GTGGGTTGGTCTGAGTAGCCTCTGCGTCGGCGATGAGATTGGTTGGTTCA
CTTGCTGAGGTCAGGTGAAAGAAACGGCTGGGTGGGTGAGAAGGTGCGGT
TTTTGTAAGTGCGAGCAAGCAACCGAATTTTCGCATTTTCGACAAGAAAT
CAAGCTGCTGGTCTGTTGGTTTGATTTCGGTTGCTACAGCCGGCAACTCA
CACGGTTCTGGACAAAAAATAGAGATGGAGAGTACATCAGTATCTGCAAA
ATTTTGTTTAGGTATGCACGACCTGCCACCGTCGAAAGGCTGGCCTGCAG
CAGGTTGGAGAATCGGCAAGGCATGCTGACAAAATATTTGGAAGATAGTA
AATTAAGCATCGGCCCGAGTTATTTGATGTTTCTGGTCTTATTGAGGGGC
CGTGGTATCTACCCAATCTTCAAATAGTATTTGCTGCGACGCCGTGCTGC
TGTATGGTAACTACCTGTAGGAGCGGGGCTCCCGCAGGCCACGGGCGGCA
ACAAGCGTCGAGCAAGAGCCAGCGCCCGGTGTCAGCACCCGGGCTGCACG
ACGGCCCGAACGTTCGGGCGAGAGGGCGACCGACAGGCTTCCTTCTGCGC
CGTCCACAAGGAAGAAGGTGGGTACGGTTAGAATTGATTGGTATTGCCTG
TGCCGTCCTGCATGCTATTGGTTGGTGCCTGTTCCACTATGCCATGTGTT
GCCGCTTCTGCGGCGTAGTGCGTCGTTCCAATTGCTGTAGGTTTAGGGTG
AACCATGTTGCGAAAAACATTGTTCGCTTTTCTGGTTCCACGAGGTACAG
TATCTGTTCGTGCTGTGCCGCTAGCCTACTGCCCTCGTGTATTCGTGTTG
TACCTTGGAGTTTTTTTTGTGTTTTCCGCTATGCATGCAAACCCCGCGTC
TCCCGTCCTGCTGCTGCCTTTTGCGCGGTTGCCTCCACGCATCCGGTGTG
TACTCCGTCATGCGGGCCCCTCAGGCATGATCAACATCAAGGGACGGCGT
TGCCACTCACCAGGGTGCCAGCACCGACCTGGCTTCGCGATGCCCGGCGA
GAAGAGGGGAAAGTTCTGCGCGTCGCACAGACAGCCAGGGATGATTGACG
TCGTCAGGTGAGACAATTGGTGGTGTTTCCGTGCCAAAGTGGTTGCGCTG
ATATGTGCGTCTAACGATGATGATTGTGCCATGCCAGGTATTGACGTTGA
TATGTGGGTCAAACATTGAAAGTGTTGACGTTGATGTGTGCATCAAACGT
TGGTGATGTTTCCATGCCAAGTGGTGACGCTGACATGTGCGTCAAACATA
CCGAAAGATAACTGGTTGGCGACGGAATAGGTGGTGAGATGCAACACACA
CGACCACATGTCAAGCATGGAGAAATACATCGCGATCACTTTTACGGCAT
ATTGTATCAATATTTTATTGTAGACCAAAAATACCCCCATTCTTCTGTCG
CGGCTTTCAGAGCGGTGACCAATATGTTCAAAGCACCGCTTTACTTTTTT
TTTTTATTTCATCCCACTCCTATTGCTGTCTGATTCCGCTGAGAGCCTCT
CGTGTACATGTAGTACTTACTGTACACGGTAACCAGCAACCACAACACTT
TGTGCAGTAATTGTGTACCACGGTTTTGCCGGCGGCAGTCGAAAATGTCA
GGTCGAGAGCGGAGACTGTGACCGTCAGCCTGTCTACGGATGGCCGGGGG
AGCGTGCCACCCGCTGCGGCACACACAAGCTCGAACGCACGGTGCGAGGA
AAGCAAGATGTTGCTGTCGTGGCGATCCTGTAATACTGGTGGCGGGTTGT
TGTACTGGTGTGGTGGTGATGTTTATCGAGCAATCGCTCAGACCTCTTCC
CCGCCATGTTCCGTTTCCTAACTTAATACAGAGACTGCGAACAAAACATT
GTAGCTGGAGTCTGGCCGTTCCAAAAGAGCTGAAAATTGAACTGGTCACG
TAGTAAAGGCTTGGCACCAACATATTGGTATTGTAGCGGTTGGTGATGTT
TCGGGTACGTCAGCCGCTGCACGCTTTCGTGAAGGTCTTGCTTGGCCAAC
GAGTGAGCTCCGTCTGTCGGCGATAAATGCTTGGATAACGAATGGCTGCT
CCCGCCTGCTCTAAATCATGTCGTCAATATGCACTTGTGTCCCTTACAGA
CATGTCAGGTGTGGTTGCGGTACCGTCAGCTATGCATCAATGTACCGCGC
GAAAAGTCTGACACGTAACGACATGGGGCAATGCTAATGCTTGGATGTGA
TGGATATAACGGCTTGGCTTGTTGTTTGTCCTCCCCGCCCTCGGTGTAGT
GGGGCTTTCGTTTTCTCGTCATCTTTTGGTCGCTTTTGTCGGGCTTATAT
GTGTCTCTGGTGACCGACTCCTTTGTTAGCATGATTACCTTCTCAACAGA
GTTGCGCAAGACCGCAAATAACCTAGGACGTGTACAACGAGATGTGGTCT
ACCGCGAGAGCCGGGAGCAATGGCACCCTCGCCAACACCGACTGTCAAAG
CTCGATAGATTAGATTAGATTAGATTAGATGAGATTGCTCCACAACCAAG
GTGTGCGGAAATAGCCACAAATTCTGCGCATAAGCCCTGGACGAGATGTT
CCAAAGCTGCCGTTTCGGGTGTTGGTGTTGGGTGTTGGCACCTAGACTAA
CCCTTTCTCGGTCGTGGAGGAGGAATCGATAAGAGCGTCAAAATCTGTCT
ATATGAGGAGTGCCATCTCTCCGCATCTGACTTGGAATGGTGAATGCTAC
CGATTGTAAGCGCGTATCGACACCGGTGATCGGTGATGCCGCCATCCAAC
GGTGTAAAGTGCTCTATACCCCTAGCACGTACAACCTGCAGTTGTCTGGA
CGCATGCCCTATAATAACCAGCAGGGCGGCTTACACAACACGTCCTGTTT
CTGTCGCTTGCGTGTCACCAGCTGACGACTCTAGCCACCGGGGCGGCGGT
GGTGGAGAAGATGTACGACGTCAGAGGGAAGCGTTGCCAAGCGGAGGGTT
GCATTAGGCAGCCTGGATTCGGACATCCGGTGAGGAGTGAGCTGGCGCTC
AGGAACATGAGTATACAGTATCACGTACCGAAGCCGAAGAGAGGCCGAAA
TAGTTTTTTTTTGTGAAGACAAATATGGCACCAACAACGACAGGAACAGG
CAAATTTTTAGTAAAATACCTCATTCTTGTCAAACATGAAAATATAGACC
TGGGACTGGGAGCGATAGATCTGAGGCAGTTCAAGGCAAGCAGAACCTGG
GCCAATTATGGTGTTCTGCAGAACGAAGTGCTTGATTCAGCCCCTACGAA
AAAAGGGGTGTTTGTTGTTGTGGCCGGACGAGTAGAGCTTTGCCCGTAAG
CTACCTTCCAAAAGCTCTGGTCAGTGTGCCTCTCGGCGATACAGTATTGC
CACCGCCGCCCGATTTCAGCGCGAAAGATACTTGAGATTTTTCGTGCTTT
GCTTCCCCGTCTCCGAAGAATACAAGAGAATTCACAGACAAAGTTGTTCA
TGCGGAGTACGAGAAAAATGCGCACACCCACGTGCAGTAGGGGGAGTTCT
CTACAGGTGGGGGCTAACATTTCTCGGGCTCTCAAGGATTGTGGACCAGT
TGCACGGTGACTGGTGACTGCAACGGCGAGCCACAGCTTCACCCCGTAGC
TGCTGTTTTCTTGTCGTTGCTCGTGGTCATATGCAATCCAGCTGAAGGAC
AAGGGCTCGGTCCGTTGCCACGAGCACAAGCTGCCAGGGATGACCAATGT
CCGGAGGCGAAGGGCGCTGGAGCGCCAAGCTCTTCAGCAGGACCCAGCTG
CAAACTATCAACCCCCGAACCACTCCCAGGCGGAGATACTGCACCATCAG
CAGCAGCAGCAGCAGCAGCAGCAGCAGCATCAGCAACAGAAACAAGAGCA
GCAGGCAGGAGACCCTTCAACTCACAGCCAGCCGGATGGCGACGAGCAAA
AACCTCTAGCAGGCTGTCATGCAGGCGGCTACGCAGAGCAACAGACCTGT
GCCGTTGTCGAAGATAGTTCGGCCATGGCGGCGACCGCATCGGCAGCGGC
CGTGTTCGCAGTAGGAGGACACCCAACCCCACATCCTTCCTCGCTCGGTG
GGAATGTCGTGAAGTCTATTCCAGTATCCATCCTTCCCCGTCCCGCCGCT
GCTATCGCCCCGCTTGGAACTCCCGCCGCGGCGTCGGTTCAAGTTGGGGG
TTACGCTGCGTTTCCGCCG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig11360:3..4471- >mRNA_E-fasciculatus_F_contig11360.1092.1 ID=mRNA_E-fasciculatus_F_contig11360.1092.1|Name=mRNA_E-fasciculatus_F_contig11360.1092.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2406bp|location=Sequence derived from alignment at E-fasciculatus_F_contig11360:3..4471- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
TCCCTCGAAGCGGTCGGTGTCTCTCCCGCTCAGCACCACGCCGCTGGGGG
GGGGGGTGCGAGTCTGCTGGGACATCACGGGGGTGGGATTGGCGCGGATG
TCGGCGTGGTCGGGGGTGGGCAAGGGGGCCCCGTGGGGTGCGGGGGATCG
TTACGGTCGGTCAAGAGACGGTCGGGAGAGGAAGTCCCTCGAAGCGGTCG
GTGTCTCTCCCGCTCAGCACCACGCCGCTGGGGGGGGGGGTGCGAGTCTG
CTGGGACATCACGGGGGTGGGATTGGCGCGGATGTCGGCGTGGTCGGGGG
TGGGCAAGGGGGCCCCGTGGGGTGCGGGGGATCGTTACGGTCGGTCAAGA
GACGGTCGGGAGAGGAAGGAGCGGGGCTCCCGCAGGCCACGGGCGGCAAC
AAGCGTCGAGCAAGAGCCAGCGCCCGGTGTCAGCACCCGGGCTGCACGAC
GGCCCGAACGTTCGGGCGAGAGGGCGACCGACAGGCTTCCTTCTGCGCCG
TCCACAAGGAAGAAGGAGCGGGGCTCCCGCAGGCCACGGGCGGCAACAAG
CGTCGAGCAAGAGCCAGCGCCCGGTGTCAGCACCCGGGCTGCACGACGGC
CCGAACGTTCGGGCGAGAGGGCGACCGACAGGCTTCCTTCTGCGCCGTCC
ACAAGGAAGAAGGCATGATCAACATCAAGGGACGGCGTTGCCACTCACCA
GGGTGCCAGCACCGACCTGGCTTCGCGATGCCCGGCGAGAAGAGGGGAAA
GTTCTGCGCGTCGCACAGACAGCCAGGGATGATTGACGTCGTCAGGCATG
ATCAACATCAAGGGACGGCGTTGCCACTCACCAGGGTGCCAGCACCGACC
TGGCTTCGCGATGCCCGGCGAGAAGAGGGGAAAGTTCTGCGCGTCGCACA
GACAGCCAGGGATGATTGACGTCGTCAGTCGAAAATGTCAGGTCGAGAGC
GGAGACTGTGACCGTCAGCCTGTCTACGGATGGCCGGGGGAGCGTGCCAC
CCGCTGCGGCACACACAAGCTCGAACGCACGTCGAAAATGTCAGGTCGAG
AGCGGAGACTGTGACCGTCAGCCTGTCTACGGATGGCCGGGGGAGCGTGC
CACCCGCTGCGGCACACACAAGCTCGAACGCACGCTGACGACTCTAGCCA
CCGGGGCGGCGGTGGTGGAGAAGATGTACGACGTCAGAGGGAAGCGTTGC
CAAGCGGAGGGTTGCATTAGGCAGCCTGGATTCGGACATCCGCTGACGAC
TCTAGCCACCGGGGCGGCGGTGGTGGAGAAGATGTACGACGTCAGAGGGA
AGCGTTGCCAAGCGGAGGGTTGCATTAGGCAGCCTGGATTCGGACATCCG
CTGAAGGACAAGGGCTCGGTCCGTTGCCACGAGCACAAGCTGCCAGGGAT
GACCAATGTCCGGAGGCGAAGGGCGCTGGAGCGCCAAGCTCTTCAGCAGG
ACCCAGCTGCAAACTATCAACCCCCGAACCACTCCCAGGCGGAGATACTG
CACCATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATCAGCAACAGAA
ACAAGAGCAGCAGGCAGGAGACCCTTCAACTCACAGCCAGCCGGATGGCG
ACGAGCAAAAACCTCTAGCAGGCTGTCATGCAGGCGGCTACGCAGAGCAA
CAGACCTGTGCCGTTGTCGAAGATAGTTCGGCCATGGCGGCGACCGCATC
GGCAGCGGCCGTGTTCGCAGTAGGAGGACACCCAACCCCACATCCTTCCT
CGCTCGGTGGGAATGTCGTGAAGTCTATTCCAGTATCCATCCTTCCCCGT
CCCGCCGCTGCTATCGCCCCGCTTGGAACTCCCGCCGCGGCGTCGGTTCA
AGTTGGGGGTTACGCTGCGTTTCCGCCGCTGAAGGACAAGGGCTCGGTCC
GTTGCCACGAGCACAAGCTGCCAGGGATGACCAATGTCCGGAGGCGAAGG
GCGCTGGAGCGCCAAGCTCTTCAGCAGGACCCAGCTGCAAACTATCAACC
CCCGAACCACTCCCAGGCGGAGATACTGCACCATCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCATCAGCAACAGAAACAAGAGCAGCAGGCAGGAGAC
CCTTCAACTCACAGCCAGCCGGATGGCGACGAGCAAAAACCTCTAGCAGG
CTGTCATGCAGGCGGCTACGCAGAGCAACAGACCTGTGCCGTTGTCGAAG
ATAGTTCGGCCATGGCGGCGACCGCATCGGCAGCGGCCGTGTTCGCAGTA
GGAGGACACCCAACCCCACATCCTTCCTCGCTCGGTGGGAATGTCGTGAA
GTCTATTCCAGTATCCATCCTTCCCCGTCCCGCCGCTGCTATCGCCCCGC
TTGGAACTCCCGCCGCGGCGTCGGTTCAAGTTGGGGGTTACGCTGCGTTT
CCGCCG back to top
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