mRNA_E-fasciculatus_F_contig1136.1090.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1136.1090.1
Unique NamemRNA_E-fasciculatus_F_contig1136.1090.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1136.1090.1 vs. uniprot
Match: D7G268_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G268_ECTSI)

HSP 1 Score: 254 bits (648), Expect = 1.650e-83
Identity = 134/183 (73.22%), Postives = 149/183 (81.42%), Query Frame = 1 
Query:    1 MTAAGAAARSPPPSTPGVHAGGVGARSATRQQPSMAVSEDTLPSSEGDYHARGAAASSSRRANFHGFTPEPDAVANAVFRDREVLSSTLQVNMLQTDNIVANARAFKALRLALLRPQEGIKALIPVCAECRETIREVRFHCHTCAKDWCRTCTDPERRRVTVSRYQKSRSHIECRSCGPSKRL 549
            M AAGA ARS PPS PGVH GGV A SATRQ PS+AV+EDT PS  GD HA G A +S R  +F GFT EPD V+N VFRDR+VLS T+QVNMLQTD+IVANARAFKAL LALLRPQEGIK LIP+CA C +TIR VR HCHTCAK+WCR CTDPE RRVT++R QKSRSHIEC++CG SK L
Sbjct:    1 MAAAGATARSRPPSAPGVHVGGVAACSATRQPPSVAVAEDTPPSPPGDDHAGGDAEASVRPGSFLGFTSEPDHVSNTVFRDRKVLSDTMQVNMLQTDSIVANARAFKALCLALLRPQEGIKVLIPMCAGCGKTIRAVRCHCHTCAKNWCRKCTDPEERRVTITRCQKSRSHIECQNCGYSKGL 183
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1136.1090.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G268_ECTSI1.650e-8373.22Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1136contigE-fasciculatus_F_contig1136:6348..7684 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_002290.1
Exons3
Model size549
Cds size549
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1136.1090.1prot_E-fasciculatus_F_contig1136.1090.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1136 6348..7684 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927645.1022785-CDS-E-fasciculatus_F_contig1136:6347..64531622927645.1022785-CDS-E-fasciculatus_F_contig1136:6347..6453Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1136 6348..6453 -
1695995632.9940195-CDS-E-fasciculatus_F_contig1136:6347..64531695995632.9940195-CDS-E-fasciculatus_F_contig1136:6347..6453Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1136 6348..6453 -
1622927645.1993947-CDS-E-fasciculatus_F_contig1136:6662..68351622927645.1993947-CDS-E-fasciculatus_F_contig1136:6662..6835Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1136 6663..6835 -
1695995633.0020819-CDS-E-fasciculatus_F_contig1136:6662..68351695995633.0020819-CDS-E-fasciculatus_F_contig1136:6662..6835Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1136 6663..6835 -
1622927645.2124782-CDS-E-fasciculatus_F_contig1136:7414..76841622927645.2124782-CDS-E-fasciculatus_F_contig1136:7414..7684Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1136 7415..7684 -
1695995633.0099745-CDS-E-fasciculatus_F_contig1136:7414..76841695995633.0099745-CDS-E-fasciculatus_F_contig1136:7414..7684Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1136 7415..7684 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1136.1090.1

>prot_E-fasciculatus_F_contig1136.1090.1 ID=prot_E-fasciculatus_F_contig1136.1090.1|Name=mRNA_E-fasciculatus_F_contig1136.1090.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=183bp
MTAAGAAARSPPPSTPGVHAGGVGARSATRQQPSMAVSEDTLPSSEGDYH
ARGAAASSSRRANFHGFTPEPDAVANAVFRDREVLSSTLQVNMLQTDNIV
ANARAFKALRLALLRPQEGIKALIPVCAECRETIREVRFHCHTCAKDWCR
TCTDPERRRVTVSRYQKSRSHIECRSCGPSKRL
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mRNA from alignment at E-fasciculatus_F_contig1136:6348..7684-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1136.1090.1 ID=mRNA_E-fasciculatus_F_contig1136.1090.1|Name=mRNA_E-fasciculatus_F_contig1136.1090.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1337bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1136:6348..7684- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACTGCGGCCGGGGCGGCGGCAAGGTCGCCCCCCCCGTCTACTCCGGG
CGTTCATGCCGGCGGTGTTGGCGCTCGCAGCGCCACCAGACAGCAACCAT
CGATGGCGGTGTCAGAGGACACGCTGCCATCGTCTGAAGGCGATTACCAC
GCTAGGGGGGCCGCTGCTTCTTCTTCTCGTCGAGCCAACTTTCATGGCTT
TACGCCCGAGCCCGACGCCGTCGCAAACGCAGTTTTTCGGGACCGCGAGG
TGCTTTCCAGCACCCTCCAGGTATCCTTGCGTTCAACCCGTGTCACAACG
AATATGAAAATATTATACTCCGAGTAATGAACAATACATTTGGTCTCCAG
GGTGGTATGGCGGCGCGGCTGGTACGGATGGTAGGCGAGAAGAAGCAAAA
ATATTGGCGAAGCAAGCAAGAGAAATTTTGACAGCACACAGGACCTTTAA
CGGAGTATGAACTATTGGTTGTTCTCGTGGAAATGCACTCACGTCCGGGG
TGACGAGGTAGCTCCTGAAATCACGACAGAGAGATATCATCGATGAGATC
CAGCCGAGTCGCGGTGAGAAGTTGGTATCTTAATGGTAAACCCTGCCGCT
CCCGGAACAAGGTAGGCTTCTACATGCTGCACTGCTGGCCTCTTCCATCT
TGTGAGCACGCTGAATTCGTAGCTGTACCCTCTGTCTGCATCACACAGCC
GTCGCCTGACACCGGAAGTCGTTCGTGAACGATGCCTGGTAGTAACGGAG
TAGCAGACCCCGTGCAATTTTCTCTGAAAGTGGCTGCATATCCGCCTTTT
CCCCGTCTCCCGCCCGATTTTCCGCTCTCACCCGCTCGCTCTACTCCAGG
TGAACATGTTGCAGACCGACAACATTGTAGCGAACGCTCGGGCATTCAAG
GCGCTACGATTGGCCCTTCTCCGGCCACAGGAGGGTATCAAGGCACTCAT
CCCCGTGTGTGCCGAGTGTCGAGAGACCATCCGGGAAGTGCGGTTTCATT
GTCACACGTGCGCCAAGGACTGGTAAGTACAGCCAGATTTTGGTACACCG
ACCGGGCGACTAGTATTATTGCTCCATCCACAAGGGTACATTGTGAAGAT
ACCGTTGCACGGCGAGCGGCAAGAGAGTGAATGCTACCCTTGATCCGACT
AGTGTGATGACGATATGAACTGTGTCCAGCAAACCAACCGGTGGGAACTG
CTGCTGGTGCTGGTTTCGGCGTGCGACGCAGGTGCCGGACGTGTACAGAC
CCCGAGAGACGGCGCGTCACCGTTAGTCGGTACCAGAAATCGCGCAGCCA
CATCGAATGCCGAAGCTGCGGCCCCTCGAAGCGCCTC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1136:6348..7684-

>mRNA_E-fasciculatus_F_contig1136.1090.1 ID=mRNA_E-fasciculatus_F_contig1136.1090.1|Name=mRNA_E-fasciculatus_F_contig1136.1090.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1098bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1136:6348..7684- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACTGCGGCCGGGGCGGCGGCAAGGTCGCCCCCCCCGTCTACTCCGGG
CGTTCATGCCGGCGGTGTTGGCGCTCGCAGCGCCACCAGACAGCAACCAT
CGATGGCGGTGTCAGAGGACACGCTGCCATCGTCTGAAGGCGATTACCAC
GCTAGGGGGGCCGCTGCTTCTTCTTCTCGTCGAGCCAACTTTCATGGCTT
TACGCCCGAGCCCGACGCCGTCGCAAACGCAGTTTTTCGGGACCGCGAGG
TGCTTTCCAGCACCCTCCAGATGACTGCGGCCGGGGCGGCGGCAAGGTCG
CCCCCCCCGTCTACTCCGGGCGTTCATGCCGGCGGTGTTGGCGCTCGCAG
CGCCACCAGACAGCAACCATCGATGGCGGTGTCAGAGGACACGCTGCCAT
CGTCTGAAGGCGATTACCACGCTAGGGGGGCCGCTGCTTCTTCTTCTCGT
CGAGCCAACTTTCATGGCTTTACGCCCGAGCCCGACGCCGTCGCAAACGC
AGTTTTTCGGGACCGCGAGGTGCTTTCCAGCACCCTCCAGGTGAACATGT
TGCAGACCGACAACATTGTAGCGAACGCTCGGGCATTCAAGGCGCTACGA
TTGGCCCTTCTCCGGCCACAGGAGGGTATCAAGGCACTCATCCCCGTGTG
TGCCGAGTGTCGAGAGACCATCCGGGAAGTGCGGTTTCATTGTCACACGT
GCGCCAAGGACTGGTGAACATGTTGCAGACCGACAACATTGTAGCGAACG
CTCGGGCATTCAAGGCGCTACGATTGGCCCTTCTCCGGCCACAGGAGGGT
ATCAAGGCACTCATCCCCGTGTGTGCCGAGTGTCGAGAGACCATCCGGGA
AGTGCGGTTTCATTGTCACACGTGCGCCAAGGACTGGTGCCGGACGTGTA
CAGACCCCGAGAGACGGCGCGTCACCGTTAGTCGGTACCAGAAATCGCGC
AGCCACATCGAATGCCGAAGCTGCGGCCCCTCGAAGCGCCTCGTGCCGGA
CGTGTACAGACCCCGAGAGACGGCGCGTCACCGTTAGTCGGTACCAGAAA
TCGCGCAGCCACATCGAATGCCGAAGCTGCGGCCCCTCGAAGCGCCTC
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