mRNA_E-fasciculatus_F_contig1136.1089.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig1136.1089.1
Unique NamemRNA_E-fasciculatus_F_contig1136.1089.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig1136.1089.1 vs. uniprot
Match: D7G267_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G267_ECTSI)

HSP 1 Score: 395 bits (1015), Expect = 1.100e-133
Identity = 218/383 (56.92%), Postives = 255/383 (66.58%), Query Frame = 1 
Query:    1 MGRPPSAHGFSYVIRADGKEWEVALNRLVEPLTSWWVEPSDFEGGHQAYAQLPADTRFALGSSDDLKG--TLVNGPTADGTYKVYVSK--QAFNLHGTKLAIPVETRLHLRQLATFRQEIYSLRTHVGGQDAYISELKRKELTTAAALTTQKSECERAEERISKIEQGAEKAICSLKIQVGDRDAYISELKRKATTTAAALTKQKSECEKAEERISKIVQGEKLMLSSAGEHDYGSNLPSPADLVQRIASIQDQLFVDWVAEALGDPSNTWLISPNGPAALFDTTQAAYEGIVKTLLLTFLECEVQRSTPLKFSDNFGSKEAWNSDDHHKDTFDPSYEGDKLVEGRTRVQVVIPRLFWEKKMVDD-SVSTFFETQASFVIPSA 1134
            M +PPSA+G   + +ADGK W++ L  L+ PL+SWWV PS F+G  Q Y +LP        S DDL    TL+NGP ADGTY+V+     + ++L G  LA+ +ETRLHL Q+   +Q+IYS +  VGGQDA IS+L+RKE+TTAAA T QKSECERA+E +SK+                                                    IVQGE+LMLSSAGEHDYGSNLPSPADLVQRIASIQDQLFVDWVAEALGDP NTWL+              AYE IVK LLLTFLECEVQRS PLKFS+ FGS+EAWN  +HHKDTFDPSYEGDKLVEG T+VQVVIPRLFWEKKM DD S+S +FETQASFV+PSA
Sbjct:    1 MDKPPSAYGRYLITQADGKCWKLPLYSLMAPLSSWWVGPSAFDGAGQPYPKLPEGMTVLARSPDDLMELVTLMNGPAADGTYQVHSPAWDKIYHLSGKILAVSLETRLHLHQMDAMKQDIYSFKAQVGGQDASISDLRRKEMTTAAAFTKQKSECERAKELVSKMXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------XXXXIVQGERLMLSSAGEHDYGSNLPSPADLVQRIASIQDQLFVDWVAEALGDPCNTWLV--------------AYEDIVKALLLTFLECEVQRSAPLKFSEKFGSREAWNPSEHHKDTFDPSYEGDKLVEGNTQVQVVIPRLFWEKKMADDDSISRYFETQASFVVPSA 358
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BLAST of mRNA_E-fasciculatus_F_contig1136.1089.1 vs. uniprot
Match: A0A6H5JMH1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMH1_9PHAE)

HSP 1 Score: 246 bits (627), Expect = 2.930e-73
Identity = 175/486 (36.01%), Postives = 222/486 (45.68%), Query Frame = 1 
Query:    4 GRPPSAHGFSYVIRADGKEWEVALNRLVEPLTSWWVEPSDFEGGHQAYAQLPADTRFALGSSDDLKGTLVNGPTADGTYKVYVSKQAFN---LHGTKLAIPVETRLHLRQLATFRQEIYSLRTHVGGQDAYISELKRKELTTAAALTTQKSECERAEERISKIEQGAEKAICSLKIQVGDRDAYISELKRKATTTAAALTKQKSECEKAEERISKIVQGEKLMLSSAGEHDYGSNLPSPADLVQRIASIQDQLFVDWVAEALGDPSNTWLI------------------------------------------------------------------------------------------------------------SPNGPAALFDTTQAAYEGIVKTLLLTFLECEVQRSTPLKFSDNFGSKEAWNSDDHHKDTFDPSYEGD-KLVEGRTRVQVVIPRLFWEKKMVDDSVSTFFETQASFVI 1125
            GR  +  G+  +  A GK  + A   L  PL SW V+PS FE G+    QLPA       SS    G LVNGP+ADG Y V  S   +    LHG +LA+P+ET L+L Q+A   + I +L T +                                          EK  C++K+              +A + + AL K++S+ +KA +RI KI QGE+LML +AGEHDYGSNLPSPADLVQRI SIQ+Q+FVD +  ALG+ SNTWL+                                                                                                            SP  P AL D T A Y  IV TLL+ FLECE+Q ST LKF  NFGS+E W+ D H+K++FDPSYEGD KLV+  T+VQVVIPRLFW KK   DS++ +FET+ASFVI
Sbjct:   81 GRQSTEPGWHNLSNALGKVQQFATYELSVPLGSWLVDPSAFESGNTGVLQLPAGMTLFETSSSYKWGQLVNGPSADGRYGVQSSTSGWKTTPLHGQELAVPLETLLYLHQVAALERRIDTLNTQL-----------------------------------------KEKYACNIKLMT------------EAMSMSTALEKEQSDLKKANDRIRKIAQGERLMLDAAGEHDYGSNLPSPADLVQRIESIQEQMFVDLIHHALGNDSNTWLVNQDAAEHIKIPREFVMQVLVETVHECYRRVXXXXXXRTEHIKRLKKEIVGAAQPGRLAHEVELFERNALHEGYKEIFVEVCPESDSDQTELARKLFHELAECISVSKVSPRVPTALLDATMATYTDIVTTLLMLFLECEIQPSTTLKFLGNFGSREPWDPDKHNKESFDPSYEGDDKLVKESTQVQVVIPRLFW-KKNDGDSITDYFETKASFVI 512
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig1136.1089.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G267_ECTSI1.100e-13356.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JMH1_9PHAE2.930e-7336.01Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig1136contigE-fasciculatus_F_contig1136:3000..5087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_002300.1
Exons4
Model size1137
Cds size1137
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig1136.1089.1prot_E-fasciculatus_F_contig1136.1089.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig1136 3000..5087 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927645.0229368-CDS-E-fasciculatus_F_contig1136:2999..31031622927645.0229368-CDS-E-fasciculatus_F_contig1136:2999..3103Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1136 3000..3103 +
1695995632.9613028-CDS-E-fasciculatus_F_contig1136:2999..31031695995632.9613028-CDS-E-fasciculatus_F_contig1136:2999..3103Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1136 3000..3103 +
1622927645.0357707-CDS-E-fasciculatus_F_contig1136:3565..37691622927645.0357707-CDS-E-fasciculatus_F_contig1136:3565..3769Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1136 3566..3769 +
1695995632.969716-CDS-E-fasciculatus_F_contig1136:3565..37691695995632.969716-CDS-E-fasciculatus_F_contig1136:3565..3769Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1136 3566..3769 +
1622927645.050766-CDS-E-fasciculatus_F_contig1136:3934..44301622927645.050766-CDS-E-fasciculatus_F_contig1136:3934..4430Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1136 3935..4430 +
1695995632.9778473-CDS-E-fasciculatus_F_contig1136:3934..44301695995632.9778473-CDS-E-fasciculatus_F_contig1136:3934..4430Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1136 3935..4430 +
1622927645.0632257-CDS-E-fasciculatus_F_contig1136:4754..50871622927645.0632257-CDS-E-fasciculatus_F_contig1136:4754..5087Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1136 4755..5087 +
1695995632.985827-CDS-E-fasciculatus_F_contig1136:4754..50871695995632.985827-CDS-E-fasciculatus_F_contig1136:4754..5087Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig1136 4755..5087 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig1136.1089.1

>prot_E-fasciculatus_F_contig1136.1089.1 ID=prot_E-fasciculatus_F_contig1136.1089.1|Name=mRNA_E-fasciculatus_F_contig1136.1089.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=379bp
MGRPPSAHGFSYVIRADGKEWEVALNRLVEPLTSWWVEPSDFEGGHQAYA
QLPADTRFALGSSDDLKGTLVNGPTADGTYKVYVSKQAFNLHGTKLAIPV
ETRLHLRQLATFRQEIYSLRTHVGGQDAYISELKRKELTTAAALTTQKSE
CERAEERISKIEQGAEKAICSLKIQVGDRDAYISELKRKATTTAAALTKQ
KSECEKAEERISKIVQGEKLMLSSAGEHDYGSNLPSPADLVQRIASIQDQ
LFVDWVAEALGDPSNTWLISPNGPAALFDTTQAAYEGIVKTLLLTFLECE
VQRSTPLKFSDNFGSKEAWNSDDHHKDTFDPSYEGDKLVEGRTRVQVVIP
RLFWEKKMVDDSVSTFFETQASFVIPSA*
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mRNA from alignment at E-fasciculatus_F_contig1136:3000..5087+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig1136.1089.1 ID=mRNA_E-fasciculatus_F_contig1136.1089.1|Name=mRNA_E-fasciculatus_F_contig1136.1089.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2088bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1136:3000..5087+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGCAGGCCACCATCCGCGCACGGTTTTAGCTACGTCATCCGTGCAGA
TGGAAAGGAGTGGGAAGTAGCACTGAACCGTCTCGTGGAGCCGTTGACAA
GCTGGTGAGATGTCTTCCGTAAATTGTGCTCATCAATAGCCGTTTTTCTC
CCGCATCAGCTTCAATGCTCGTATTACATTCCCTTGGCGCGCAGACAGAC
CCATGTGTTCACAAGAGAGAACTCTTAACATGTGCCTACAGTACTCTCAG
CTATAATCGAACAAATCGCCCCACTGGTATAACCCCCTCTGGCTATTCCC
CCATGGCCATTTCCTGTTATGAAACAACGTGTGGTGGAATTGTCATGAAA
CAACGTGTGGTGGAAATCTTGCCAACTTTTAGCGCCTAGGGGTATGTAAC
CTTGACGTGCTCACAACGTGCGCCCTAGCCAACATCTCGCCCGAATGAGG
CGTCTACCGGTGCTACACGTAGAGTACAAACCTTGTGCTTCTAGATTTGT
TTGGTGGAGATCCTCGTGGTTTTAACTTGCACTGCAAAATGATCAATGCA
ACCAATATTGTGCCAGGTGGGTTGAACCCTCCGATTTCGAAGGGGGGCAT
CAAGCGTACGCCCAGTTGCCAGCGGACACGAGGTTTGCTCTCGGATCGTC
CGACGATTTGAAGGGCACGCTCGTGAACGGCCCTACTGCAGATGGCACTT
ACAAGGTTTACGTCTCGAAGCAGGCGTTCAACTTGCATGGAACGAAGCTC
GCCATCCCCGTCGAAACCCGGTAAGCCCAATCGAATCTTCGGCTTTTGCA
ACACGAAAACGACTCGGAGAGTAAGGCGTTCAGTGCGGATATTTAAACTC
CTGTTGCTCGAATCAATGAGTCGTAGCGGGCGGGCGGCCTGTACCCTACT
CATTCCTTGAACACACACCCCGTGCTGCTTCACAGGCTACACCTGCGCCA
GTTGGCAACGTTTCGGCAAGAAATCTACTCGCTCAGAACCCATGTGGGGG
GACAAGACGCCTACATCAGTGAGCTCAAGAGGAAAGAGTTGACCACAGCC
GCCGCCCTCACGACGCAGAAGTCCGAATGCGAGAGGGCCGAGGAGCGCAT
CAGCAAGATTGAACAGGGCGCTGAGAAAGCTATATGCTCGCTCAAAATCC
AAGTGGGGGACCGGGACGCTTACATCAGTGAGCTCAAGAGGAAAGCGACC
ACCACGGCCGCCGCCCTCACGAAGCAGAAGTCCGAATGCGAGAAGGCCGA
GGAGCGCATCAGCAAGATTGTCCAGGGCGAGAAGCTCATGCTCAGCTCAG
CCGGCGAGCATGACTACGGCTCGAACCTCCCATCACCGGCTGACCTTGTC
CAGCGAATCGCGAGCATCCAAGATCAGCTATTCGTGGACTGGGTCGCGGA
AGCCCTGGGAGACCCCAGCAACACATGGTTGGTGAGCCAGGATGCCATTG
AGGCTATGAAAAACCCCAGGAACTTCGTGTTGCAGGTGCTTGTCGAGACG
GCGTATGAGTGCTTTCGGCGCGTCCGCGAATGTGTTTCCAGGCGTATGGA
TCTGATGACAACTACCATGGGGGAGTTCGTGGGGGCGGTAAACGACGGCC
CCCTTGCTGAAGAAGTGGCGCATTTCAAGCGCAGCGCCTTCCACAAGGGA
TACAAAGAGATGTTCGCTGAGGTGTGCCCTACACGTCCCATCGACCAGAG
CGACCTGGCTCGAGATGTCTTCTATGGACTTCCCGCGTGCGTGTCCGTTT
CGAAGATATCGCCGAATGGTCCCGCGGCACTGTTCGATACGACACAAGCG
GCCTACGAGGGTATCGTCAAGACCCTTCTCTTGACGTTCTTGGAGTGCGA
AGTTCAGCGATCGACCCCACTGAAGTTCTCGGACAATTTTGGAAGCAAGG
AGGCTTGGAACTCTGACGATCACCACAAGGATACATTCGACCCTTCTTAT
GAAGGGGATAAGCTCGTGGAGGGGCGCACTCGGGTGCAGGTGGTCATCCC
TCGCCTTTTCTGGGAGAAGAAGATGGTAGACGACAGTGTTTCAACGTTTT
TTGAGACCCAGGCTTCTTTTGTTATTCCCAGTGCCTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig1136:3000..5087+

>mRNA_E-fasciculatus_F_contig1136.1089.1 ID=mRNA_E-fasciculatus_F_contig1136.1089.1|Name=mRNA_E-fasciculatus_F_contig1136.1089.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2274bp|location=Sequence derived from alignment at E-fasciculatus_F_contig1136:3000..5087+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGGCAGGCCACCATCCGCGCACGGTTTTAGCTACGTCATCCGTGCAGA
TGGAAAGGAGTGGGAAGTAGCACTGAACCGTCTCGTGGAGCCGTTGACAA
GCTGATGGGCAGGCCACCATCCGCGCACGGTTTTAGCTACGTCATCCGTG
CAGATGGAAAGGAGTGGGAAGTAGCACTGAACCGTCTCGTGGAGCCGTTG
ACAAGCTGGTGGGTTGAACCCTCCGATTTCGAAGGGGGGCATCAAGCGTA
CGCCCAGTTGCCAGCGGACACGAGGTTTGCTCTCGGATCGTCCGACGATT
TGAAGGGCACGCTCGTGAACGGCCCTACTGCAGATGGCACTTACAAGGTT
TACGTCTCGAAGCAGGCGTTCAACTTGCATGGAACGAAGCTCGCCATCCC
CGTCGAAACCCGGTGGGTTGAACCCTCCGATTTCGAAGGGGGGCATCAAG
CGTACGCCCAGTTGCCAGCGGACACGAGGTTTGCTCTCGGATCGTCCGAC
GATTTGAAGGGCACGCTCGTGAACGGCCCTACTGCAGATGGCACTTACAA
GGTTTACGTCTCGAAGCAGGCGTTCAACTTGCATGGAACGAAGCTCGCCA
TCCCCGTCGAAACCCGGCTACACCTGCGCCAGTTGGCAACGTTTCGGCAA
GAAATCTACTCGCTCAGAACCCATGTGGGGGGACAAGACGCCTACATCAG
TGAGCTCAAGAGGAAAGAGTTGACCACAGCCGCCGCCCTCACGACGCAGA
AGTCCGAATGCGAGAGGGCCGAGGAGCGCATCAGCAAGATTGAACAGGGC
GCTGAGAAAGCTATATGCTCGCTCAAAATCCAAGTGGGGGACCGGGACGC
TTACATCAGTGAGCTCAAGAGGAAAGCGACCACCACGGCCGCCGCCCTCA
CGAAGCAGAAGTCCGAATGCGAGAAGGCCGAGGAGCGCATCAGCAAGATT
GTCCAGGGCGAGAAGCTCATGCTCAGCTCAGCCGGCGAGCATGACTACGG
CTCGAACCTCCCATCACCGGCTGACCTTGTCCAGCGAATCGCGAGCATCC
AAGATCAGCTATTCGTGGACTGGGTCGCGGAAGCCCTGGGAGACCCCAGC
AACACATGGTTGGCTACACCTGCGCCAGTTGGCAACGTTTCGGCAAGAAA
TCTACTCGCTCAGAACCCATGTGGGGGGACAAGACGCCTACATCAGTGAG
CTCAAGAGGAAAGAGTTGACCACAGCCGCCGCCCTCACGACGCAGAAGTC
CGAATGCGAGAGGGCCGAGGAGCGCATCAGCAAGATTGAACAGGGCGCTG
AGAAAGCTATATGCTCGCTCAAAATCCAAGTGGGGGACCGGGACGCTTAC
ATCAGTGAGCTCAAGAGGAAAGCGACCACCACGGCCGCCGCCCTCACGAA
GCAGAAGTCCGAATGCGAGAAGGCCGAGGAGCGCATCAGCAAGATTGTCC
AGGGCGAGAAGCTCATGCTCAGCTCAGCCGGCGAGCATGACTACGGCTCG
AACCTCCCATCACCGGCTGACCTTGTCCAGCGAATCGCGAGCATCCAAGA
TCAGCTATTCGTGGACTGGGTCGCGGAAGCCCTGGGAGACCCCAGCAACA
CATGGTTGATATCGCCGAATGGTCCCGCGGCACTGTTCGATACGACACAA
GCGGCCTACGAGGGTATCGTCAAGACCCTTCTCTTGACGTTCTTGGAGTG
CGAAGTTCAGCGATCGACCCCACTGAAGTTCTCGGACAATTTTGGAAGCA
AGGAGGCTTGGAACTCTGACGATCACCACAAGGATACATTCGACCCTTCT
TATGAAGGGGATAAGCTCGTGGAGGGGCGCACTCGGGTGCAGGTGGTCAT
CCCTCGCCTTTTCTGGGAGAAGAAGATGGTAGACGACAGTGTTTCAACGT
TTTTTGAGACCCAGGCTTCTTTTGTTATTCCCAGTGCCTGAATATCGCCG
AATGGTCCCGCGGCACTGTTCGATACGACACAAGCGGCCTACGAGGGTAT
CGTCAAGACCCTTCTCTTGACGTTCTTGGAGTGCGAAGTTCAGCGATCGA
CCCCACTGAAGTTCTCGGACAATTTTGGAAGCAAGGAGGCTTGGAACTCT
GACGATCACCACAAGGATACATTCGACCCTTCTTATGAAGGGGATAAGCT
CGTGGAGGGGCGCACTCGGGTGCAGGTGGTCATCCCTCGCCTTTTCTGGG
AGAAGAAGATGGTAGACGACAGTGTTTCAACGTTTTTTGAGACCCAGGCT
TCTTTTGTTATTCCCAGTGCCTGA
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