mRNA_E-fasciculatus_F_contig10098.107.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10098.107.1
Unique NamemRNA_E-fasciculatus_F_contig10098.107.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10098.107.1 vs. uniprot
Match: D8LNI5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNI5_ECTSI)

HSP 1 Score: 234 bits (597), Expect = 4.320e-75
Identity = 119/127 (93.70%), Postives = 122/127 (96.06%), Query Frame = 1 
Query:    1 RQIASWRGGAVESSDGRPPLMNAQLGLVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTEEEVAVSDGGSGDEEGV 381
            RQIASWRGGAVESS+G PPLMN QLGLVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLK+NPIRAYGESVVVLFQTLVMVGLLWRFG EEEVAVSDGG GDEE +
Sbjct:   48 RQIASWRGGAVESSEGGPPLMNVQLGLVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKKNPIRAYGESVVVLFQTLVMVGLLWRFGAEEEVAVSDGG-GDEEAL 173
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BLAST of mRNA_E-fasciculatus_F_contig10098.107.1 vs. uniprot
Match: A0A6H5K508_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K508_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 1.550e-61
Identity = 99/99 (100.00%), Postives = 99/99 (100.00%), Query Frame = 1 
Query:   61 MNAQLGLVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTEEEVAVSDG 357
            MNAQLGLVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTEEEVAVSDG
Sbjct:    1 MNAQLGLVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTEEEVAVSDG 99
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BLAST of mRNA_E-fasciculatus_F_contig10098.107.1 vs. uniprot
Match: A0A836CGJ2_9STRA (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGJ2_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 3.250e-15
Identity = 37/86 (43.02%), Postives = 57/86 (66.28%), Query Frame = 1 
Query:   67 AQLGLVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRF 324
            A++   ++AG GII GS+ +K PQI R+  A+S++GL+  + Y +V L +  VIYH  K  P  AYGE+  +L Q L++V L+WR+
Sbjct:   45 ARVIFAKLAGLGIIVGSMGMKLPQIMRILEARSVLGLSLTANYFEVPLVSNGVIYHFKKGYPFSAYGENAFLLVQNLIVVALMWRY 130
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BLAST of mRNA_E-fasciculatus_F_contig10098.107.1 vs. uniprot
Match: A0A7S1GSU5_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GSU5_HEMAN)

HSP 1 Score: 75.1 bits (183), Expect = 7.930e-14
Identity = 33/82 (40.24%), Postives = 56/82 (68.29%), Query Frame = 1 
Query:   79 LVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRF 324
            L +V G  I+ GS  LK PQI ++  + S+ GL+P ++Y ++ L+++ VIYH+L+  P+  YGE VV++FQ + +V L+W +
Sbjct:   37 LSKVLGTMIVMGSFFLKMPQIVKIIASGSVAGLSPEAVYYELPLYSSGVIYHLLQGLPLSTYGEMVVIMFQNITIVLLMWWY 118
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BLAST of mRNA_E-fasciculatus_F_contig10098.107.1 vs. uniprot
Match: A0A2S2PXW9_9HEMI (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Sipha flava TaxID=143950 RepID=A0A2S2PXW9_9HEMI)

HSP 1 Score: 73.6 bits (179), Expect = 3.040e-13
Identity = 32/86 (37.21%), Postives = 56/86 (65.12%), Query Frame = 1 
Query:   94 GYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTEEEVAVS 351
            G+GI+ GSL +K PQ+ +VW++KS VG++  ++  D+F    +V+Y    + P  A+G+S+ +LFQTL++V L+  +   +  A S
Sbjct:   45 GFGIVGGSLLVKLPQVLKVWNSKSAVGISLINVCMDLFAVTANVVYSYSSQFPFSAWGDSLFILFQTLLIVILVLYYNISKRAASS 130
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BLAST of mRNA_E-fasciculatus_F_contig10098.107.1 vs. uniprot
Match: J9K4J7_ACYPI (Mannose-P-dolichol utilization defect 1 protein homolog n=8 Tax=Aphidinae TaxID=133076 RepID=J9K4J7_ACYPI)

HSP 1 Score: 73.2 bits (178), Expect = 4.250e-13
Identity = 30/84 (35.71%), Postives = 56/84 (66.67%), Query Frame = 1 
Query:   94 GYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTEEEVA 345
            G+GI+ GSL +K PQ+ +VW +KS VG++  ++  D+F   ++V+Y    + P  ++G+S+ +LFQTL++V L++ +   +  A
Sbjct:   45 GFGIVGGSLLVKLPQVIKVWQSKSAVGISLVNVCMDLFAVTSNVVYSYSSQFPFSSWGDSLFILFQTLLIVILVFYYNISKRAA 128
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BLAST of mRNA_E-fasciculatus_F_contig10098.107.1 vs. uniprot
Match: A0A6G0Y8K2_APHCR (Mannose-P-dolichol utilization defect 1 protein homolog n=1 Tax=Aphis craccivora TaxID=307492 RepID=A0A6G0Y8K2_APHCR)

HSP 1 Score: 71.6 bits (174), Expect = 1.410e-12
Identity = 28/70 (40.00%), Postives = 49/70 (70.00%), Query Frame = 1 
Query:   94 GYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVM 303
            G+GI+ GSL +K PQ+ +VWH+KS VG++  ++  D+F    +V+Y    + P  ++G+S+ +LFQTL++
Sbjct:   45 GFGIVGGSLLVKLPQVIKVWHSKSAVGISLVNVCMDLFAVTANVVYSYSSQFPFSSWGDSLFILFQTLLI 114
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BLAST of mRNA_E-fasciculatus_F_contig10098.107.1 vs. uniprot
Match: UPI000CDA2337 (mannose-P-dolichol utilization defect 1 protein n=1 Tax=Cyanistes caeruleus TaxID=156563 RepID=UPI000CDA2337)

HSP 1 Score: 68.2 bits (165), Expect = 8.170e-12
Identity = 33/83 (39.76%), Postives = 52/83 (62.65%), Query Frame = 1 
Query:   79 LVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFG 327
            L +V GYGI+AGS+ +K PQ+ +VW ++S  GL+  S+  ++     SV Y   +  P  A+GES+ +L QTL ++ L+  FG
Sbjct:   37 LSKVLGYGIVAGSVLVKVPQLLKVWGSRSGGGLSLPSVLLELLALGGSVGYGCARSFPFSAWGESLFLLLQTLTLLFLILHFG 119
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10098.107.1 vs. uniprot
Match: A0A674HUV8_TAEGU (Solute carrier family 66 member 3 n=10 Tax=root TaxID=1 RepID=A0A674HUV8_TAEGU)

HSP 1 Score: 68.2 bits (165), Expect = 2.790e-11
Identity = 33/83 (39.76%), Postives = 52/83 (62.65%), Query Frame = 1 
Query:   79 LVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFG 327
            L +V GYGI+AGS+ +K PQ+ +VW ++S  GL+  S+  ++     SV Y   +  P  A+GES+ +L QTL ++ L+  FG
Sbjct:   37 LSKVLGYGIVAGSVLVKVPQLLKVWGSRSGGGLSLPSVLLELLALGGSVGYGCARSFPFSAWGESLFLLLQTLTLLFLILHFG 119
[Close]
BLAST of mRNA_E-fasciculatus_F_contig10098.107.1 vs. uniprot
Match: UPI001361FB74 (mannose-P-dolichol utilization defect 1 protein isoform X2 n=1 Tax=Corvus moneduloides TaxID=1196302 RepID=UPI001361FB74)

HSP 1 Score: 67.8 bits (164), Expect = 2.940e-11
Identity = 33/92 (35.87%), Postives = 55/92 (59.78%), Query Frame = 1 
Query:   79 LVRVAGYGIIAGSLCLKTPQIARVWHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLVMVGLLWRFGTEEEVAVSD 354
            L ++ GYGI+AGS+ +K PQ+ +VW ++S  GL+  S+  ++     SV Y   +  P  A+GE++ +L QTL ++ L+  FG     A +D
Sbjct:   37 LSKILGYGIVAGSVLVKVPQLLKVWGSRSGGGLSLPSVLLELLALGGSVGYGCARSFPFSAWGEALFLLLQTLTLLFLILHFGGRTGRAAAD 128
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10098.107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNI5_ECTSI4.320e-7593.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K508_9PHAE1.550e-61100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CGJ2_9STRA3.250e-1543.02Mannose-P-dolichol utilization defect 1 protein ho... [more]
A0A7S1GSU5_HEMAN7.930e-1440.24Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
A0A2S2PXW9_9HEMI3.040e-1337.21Mannose-P-dolichol utilization defect 1 protein ho... [more]
J9K4J7_ACYPI4.250e-1335.71Mannose-P-dolichol utilization defect 1 protein ho... [more]
A0A6G0Y8K2_APHCR1.410e-1240.00Mannose-P-dolichol utilization defect 1 protein ho... [more]
UPI000CDA23378.170e-1239.76mannose-P-dolichol utilization defect 1 protein n=... [more]
A0A674HUV8_TAEGU2.790e-1139.76Solute carrier family 66 member 3 n=10 Tax=root Ta... [more]
UPI001361FB742.940e-1135.87mannose-P-dolichol utilization defect 1 protein is... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10098contigE-fasciculatus_F_contig10098:3808..5035 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score233.4
Seed ortholog evalue5.8e-59
Seed eggNOG ortholog2880.D8LNI5
KEGG koko:K09660
EggNOG free text desc.dolichol-linked oligosaccharide biosynthetic process
EggNOG OGsKOG3211@1,KOG3211@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01003
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionPQ-loop repeat
Ec32 orthologEc-24_002970.1
Exons2
Model size382
Cds size381
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927511.3589976-CDS-E-fasciculatus_F_contig10098:3807..39361622927511.3589976-CDS-E-fasciculatus_F_contig10098:3807..3936Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10098 3808..3936 +
1695995571.657307-CDS-E-fasciculatus_F_contig10098:3807..39361695995571.657307-CDS-E-fasciculatus_F_contig10098:3807..3936Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10098 3808..3936 +
1622927511.3733366-CDS-E-fasciculatus_F_contig10098:4783..50351622927511.3733366-CDS-E-fasciculatus_F_contig10098:4783..5035Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10098 4784..5035 +
1695995571.6701667-CDS-E-fasciculatus_F_contig10098:4783..50351695995571.6701667-CDS-E-fasciculatus_F_contig10098:4783..5035Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10098 4784..5035 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10098.107.1prot_E-fasciculatus_F_contig10098.107.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10098 3808..5035 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10098.107.1

>prot_E-fasciculatus_F_contig10098.107.1 ID=prot_E-fasciculatus_F_contig10098.107.1|Name=mRNA_E-fasciculatus_F_contig10098.107.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=127bp
RQIASWRGGAVESSDGRPPLMNAQLGLVRVAGYGIIAGSLCLKTPQIARV
WHAKSLVGLAPASIYADVFLFATSVIYHVLKRNPIRAYGESVVVLFQTLV
MVGLLWRFGTEEEVAVSDGGSGDEEGV
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mRNA from alignment at E-fasciculatus_F_contig10098:3808..5035+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10098.107.1 ID=mRNA_E-fasciculatus_F_contig10098.107.1|Name=mRNA_E-fasciculatus_F_contig10098.107.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1228bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10098:3808..5035+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGCAAATCGCATCTTGGAGAGGAGGAGCGGTTGAAAGCAGCGACGGCCG
ACCACCTCTCATGAACGCCCAGCTAGGATTGGTCAGGGTCGCTGGGTATG
GCATCATCGCTGGTTCTCTTTGCCTCAAGGTGCCCTCGTAGGCTCAGCTC
TCGGTCTCTGTCTGTATGCCTCTCTCTGTGAGTCTCTCTCTATATCTATG
TGTGTCTCTCGTTACCTATCTCTACCTCTAGTCTGTCCATGTCTTCAGCG
TAGATGCATTGTCGCTTTCTTTGTACGTGCAAGATCAATTCAGGGGCGAG
CCGCAGAGGCGGGCATTCTCTCCTACGAGAGGGTAAAGACTTGAACCCAG
CGTCCTGGATGTACTGAGCTCACAACAGTCTCAACAGCAGCAGACGAACG
CTCTTGTTGCAACAACAGCTGCGGCGACCTGGCGTCGAGCGGGAACGTTG
TTGTTAGTTTCGACTGTTGTCAGTGTCTTCTCATGGCGCTCCGATCCAGG
TTTCAAACGCCCCTTGCAACTCTCCACACAGCAGCGTTGATTCCGGGCTT
CACGAGTTCCTCCTTAATACGACCGCACTTTGTTATCATCCATCCGGTTT
CTTTTTCCGCTTGGGAGGCACAGCAGTACCTACCCCAAAGTAGCACAGGG
AACGGATGACGAGAGGAACCAACTACAGACTTCGCTACGCGGTGGCTCCC
ACAGAGCATGCTCATGGAGCGCATTTCCCTCTTTTCCTCCTCGCCCGTGC
CTTCCCAAAGTGAAAACCTCCAAGATTAAGATTTACCGAGCAACTATGAC
GGCACAAGACCCCCTCCCCGACTACTGCATGAACGACTATGTACACCCCC
CCCCCCCTCCCCGCCATAGGTTTGTATCGATCTACCCCGCTGGGATGTCT
CGCTTATGAGCGTCTGAGATGACTGCTGTGACTCCCGCTTCGCCCTCCCC
GCCGCTCCCTACTCTATTATCTGCAGACCCCCCAGATCGCACGGGTGTGG
CACGCCAAGTCCCTCGTGGGCCTGGCGCCGGCTTCCATCTACGCGGACGT
TTTCCTCTTCGCGACCTCCGTGATCTACCACGTGCTCAAGAGGAACCCCA
TCCGCGCCTACGGCGAGTCGGTAGTGGTGCTGTTCCAGACGCTGGTGATG
GTGGGGCTGCTGTGGCGATTCGGCACCGAGGAGGAGGTTGCCGTATCCGA
CGGCGGCAGCGGTGACGAGGAAGGTGTG
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10098:3808..5035+

>mRNA_E-fasciculatus_F_contig10098.107.1 ID=mRNA_E-fasciculatus_F_contig10098.107.1|Name=mRNA_E-fasciculatus_F_contig10098.107.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=762bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10098:3808..5035+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGGCAAATCGCATCTTGGAGAGGAGGAGCGGTTGAAAGCAGCGACGGCCG
ACCACCTCTCATGAACGCCCAGCTAGGATTGGTCAGGGTCGCTGGGTATG
GCATCATCGCTGGTTCTCTTTGCCTCAAGAGGCAAATCGCATCTTGGAGA
GGAGGAGCGGTTGAAAGCAGCGACGGCCGACCACCTCTCATGAACGCCCA
GCTAGGATTGGTCAGGGTCGCTGGGTATGGCATCATCGCTGGTTCTCTTT
GCCTCAAGACCCCCCAGATCGCACGGGTGTGGCACGCCAAGTCCCTCGTG
GGCCTGGCGCCGGCTTCCATCTACGCGGACGTTTTCCTCTTCGCGACCTC
CGTGATCTACCACGTGCTCAAGAGGAACCCCATCCGCGCCTACGGCGAGT
CGGTAGTGGTGCTGTTCCAGACGCTGGTGATGGTGGGGCTGCTGTGGCGA
TTCGGCACCGAGGAGGAGGTTGCCGTATCCGACGGCGGCAGCGGTGACGA
GGAAGGTGTGACCCCCCAGATCGCACGGGTGTGGCACGCCAAGTCCCTCG
TGGGCCTGGCGCCGGCTTCCATCTACGCGGACGTTTTCCTCTTCGCGACC
TCCGTGATCTACCACGTGCTCAAGAGGAACCCCATCCGCGCCTACGGCGA
GTCGGTAGTGGTGCTGTTCCAGACGCTGGTGATGGTGGGGCTGCTGTGGC
GATTCGGCACCGAGGAGGAGGTTGCCGTATCCGACGGCGGCAGCGGTGAC
GAGGAAGGTGTG
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