mRNA_E-fasciculatus_F_contig10095.102.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10095.102.1
Unique NamemRNA_E-fasciculatus_F_contig10095.102.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10095.102.1 vs. uniprot
Match: D8LB33_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB33_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 6.860e-22
Identity = 72/178 (40.45%), Postives = 92/178 (51.69%), Query Frame = 3 
Query:  405 AESGSKCALGHALCTS--------------------CTTQYVKATLFSQGTVRWDKIVCMGPECTACMGGASVRHCISHELVASIDAAQPKAVPSVGPEHGGGFGRAVGAGAPKFLEHDRASEAAVVELFKPCPKCKVPTEKVGGSDHMTC-VCKHEYYWSCQCVYPTARHV--SCVP 869
            + SG++C L H LC +                    CTTQYV+ TL  +GTV WD+I C+ P+C A M G SV+ C+  +L + IDAAQ   VP +GPE      RA           DRAS   V    KPCP C+V TEK  G  HM C +C HEY W C+  + T  H+  +CVP
Sbjct:  694 SSSGTECVLFHELCENMVTDSRXXXXXXXXXXXXADCTTQYVEKTLLPRGTVWWDRIRCVDPDCDAHMVGLSVQRCLGSDLRSRIDAAQLDVVPMIGPEARHERERAA------RTPEDRASATTVATTTKPCPNCEVATEKNKGCKHMVCSMCNHEYCWICRSEW-TPGHLRDTCVP 864
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BLAST of mRNA_E-fasciculatus_F_contig10095.102.1 vs. uniprot
Match: A0A4D9DDT2_9STRA (RING-type domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DDT2_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 5.730e-7
Identity = 33/69 (47.83%), Postives = 43/69 (62.32%), Query Frame = 3 
Query:  669 GAGAPKFLEH----DRASEAAVVELFKPCPKCKVPTEKVGGSDHMTCV-CKHEYYWSCQCVYPTARHVS 860
            GAG  ++L      DRAS+  V  + KPCPKCK PTEK GG +H++C  C+HE+ W C+  Y T  H S
Sbjct:  342 GAGCRRYLRQVKATDRASKTTVRRISKPCPKCKAPTEKNGGCNHISCAQCRHEWCWLCEQRY-TPYHYS 409
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BLAST of mRNA_E-fasciculatus_F_contig10095.102.1 vs. uniprot
Match: W7TWG7_9STRA (Ring-finger-containing e3 ubiquitin (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TWG7_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 5.810e-7
Identity = 33/73 (45.21%), Postives = 45/73 (61.64%), Query Frame = 3 
Query:  657 GRAVGAGAPKFLEH----DRASEAAVVELFKPCPKCKVPTEKVGGSDHMTCV-CKHEYYWSCQCVYPTARHVS 860
            G+  GAG  ++L      +RAS+  V  + KPCPKCK PTEK GG +H++C  C+HE+ W C+  Y T  H S
Sbjct:  131 GKEGGAGCRRYLRQVEATERASKTTVRRISKPCPKCKAPTEKNGGCNHISCAQCRHEWCWLCEQRY-TPYHYS 202
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BLAST of mRNA_E-fasciculatus_F_contig10095.102.1 vs. uniprot
Match: A0A074Y604_AURSE (RING-type domain-containing protein n=1 Tax=Aureobasidium subglaciale (strain EXF-2481) TaxID=1043005 RepID=A0A074Y604_AURSE)

HSP 1 Score: 57.8 bits (138), Expect = 7.150e-5
Identity = 25/50 (50.00%), Postives = 31/50 (62.00%), Query Frame = 3 
Query:  693 EHDRASEAAVVELFKPCPKCKVPTEKVGGSDHMTCV-CKHEYYWSCQCVY 839
            E D +S   +  + KPCPKCKVP EK GG DHMTC  C +++ W C   Y
Sbjct:  280 EEDESSVVLLGTITKPCPKCKVPIEKNGGCDHMTCASCHYQFCWLCSTDY 329
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10095.102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D8LB33_ECTSI6.860e-2240.45RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A4D9DDT2_9STRA5.730e-747.83RING-type domain-containing protein n=1 Tax=Nannoc... [more]
W7TWG7_9STRA5.810e-745.21Ring-finger-containing e3 ubiquitin (Fragment) n=1... [more]
A0A074Y604_AURSE7.150e-550.00RING-type domain-containing protein n=1 Tax=Aureob... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10095contigE-fasciculatus_F_contig10095:2..2615 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score146.4
Seed ortholog evalue1.2e-32
Seed eggNOG ortholog2880.D8LB34
KEGG koko:K11967,ko:K11973,ko:K11977
EggNOG free text desc.ubiquitin conjugating enzyme binding
EggNOG OGsKOG1815@1,KOG1815@2759
EC2.3.2.31
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size2614
Cds size480
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10095.102.1prot_E-fasciculatus_F_contig10095.102.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10095 397..876 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927511.1443403-UTR-E-fasciculatus_F_contig10095:1..3961622927511.1443403-UTR-E-fasciculatus_F_contig10095:1..396Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10095 2..396 +
1695995571.551017-UTR-E-fasciculatus_F_contig10095:1..3961695995571.551017-UTR-E-fasciculatus_F_contig10095:1..396Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10095 2..396 +
1622927511.1622608-UTR-E-fasciculatus_F_contig10095:876..26151622927511.1622608-UTR-E-fasciculatus_F_contig10095:876..2615Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10095 877..2615 +
1695995571.5735533-UTR-E-fasciculatus_F_contig10095:876..26151695995571.5735533-UTR-E-fasciculatus_F_contig10095:876..2615Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10095 877..2615 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927511.153717-CDS-E-fasciculatus_F_contig10095:396..8761622927511.153717-CDS-E-fasciculatus_F_contig10095:396..876Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10095 397..876 +
1695995571.564082-CDS-E-fasciculatus_F_contig10095:396..8761695995571.564082-CDS-E-fasciculatus_F_contig10095:396..876Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10095 397..876 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10095.102.1

>prot_E-fasciculatus_F_contig10095.102.1 ID=prot_E-fasciculatus_F_contig10095.102.1|Name=mRNA_E-fasciculatus_F_contig10095.102.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=160bp
MTGAESGSKCALGHALCTSCTTQYVKATLFSQGTVRWDKIVCMGPECTAC
MGGASVRHCISHELVASIDAAQPKAVPSVGPEHGGGFGRAVGAGAPKFLE
HDRASEAAVVELFKPCPKCKVPTEKVGGSDHMTCVCKHEYYWSCQCVYPT
ARHVSCVPR*
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mRNA from alignment at E-fasciculatus_F_contig10095:2..2615+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10095.102.1 ID=mRNA_E-fasciculatus_F_contig10095.102.1|Name=mRNA_E-fasciculatus_F_contig10095.102.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=2614bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10095:2..2615+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CCCCACAGCAGTCTGCGAGGCCAGTATCAGCAGCCAAAGCACAGCCGCCA
CCACCGCCATCACATCAGTCTGTGAGACCAGCATCAGCATCCAAATTACA
ACCTCCGCCACCGCCCCCACAGCAGTCTGCGAGGCCAGTATCAGCAGCCA
AAGCACAGCCTCCGCCACCTCCATCACATCAGTCTGTGAGACCAGCATCA
GCATCCAAGTTACAACCTCCGCCACCGCCACCACAGCAGTCTGCGAGGCC
AGTATCAGCAGCCAAAGCACAGCCTCCGCCACCTCCATCTCATCAGATTG
CGAGGCCAGCATCAGCAGCAACAGCACGGCCTCCACCACCGCCACCACTC
CCGCTGCCGCACTCGAAATGCGTGCGTCTTGAGTGCGGGAACGCAATGAC
CGGTGCCGAATCTGGGAGCAAGTGCGCTTTGGGGCACGCCCTTTGCACCT
CCTGTACCACTCAGTACGTGAAAGCAACGTTGTTTTCGCAAGGCACCGTG
CGTTGGGACAAGATCGTTTGCATGGGTCCGGAATGCACGGCGTGCATGGG
AGGAGCGAGCGTTCGGCACTGCATCAGCCATGAGCTCGTGGCGAGTATCG
ATGCTGCTCAGCCTAAAGCTGTACCTTCGGTTGGGCCGGAACACGGAGGC
GGCTTCGGTCGCGCGGTGGGGGCGGGGGCGCCTAAGTTTCTCGAGCACGA
TCGGGCGTCGGAGGCAGCCGTGGTGGAGTTGTTCAAGCCGTGTCCGAAGT
GCAAGGTGCCGACTGAGAAGGTCGGAGGGTCTGATCACATGACCTGTGTG
TGCAAGCATGAGTACTATTGGAGCTGCCAGTGCGTTTACCCTACTGCGCG
GCACGTGTCTTGCGTTCCGCGGTGAAAACTCGTGGCGGTGTTAGCGATTG
GGTTGGAAAGGGCTGCATCAACTAGATTTTTTGGCAGATGCTGAAAAATC
ATACCGCCCCTGTATTCACGTGGATCACAGATATTTTGCCTGGCCGGTGA
GAATCCGGCATACAATATTCTGGCACCAGGGATGTGGGTTCCTTTGAGCA
CTTTTGTATTGTTTTGTTTATTGCATTGAAGCTGGCAGATAAATTTCAAT
GTCTCGATTTTTTTGCCTCTTGCACATTAAAAGATATGCCTTGAGAAATG
GCAGGGCCGATTTACACCCGGGGATCAATGAAGGCATCTCGGCCTAGGGT
TACAAAGATGGCGATTGTATTGTCGAATTGGTTGGATATCTTCGATTATT
GAGGCATTTTTAGGTTCTAGCGTTCCGGGGCACTTCTGCGTGTCGAAGAC
ACAGTGCTTGCGACATCGAACTTCCACGAACTGGATTTATTTTCATCGCG
TTTGTGTTGGTCTCTCTGGGTCCTTATTGTTTGTTTGTTTTTCGTTACAA
TATACCTGTTTTTTTCGGGTAGTAGCCTGTGACCACGGAAGGCGTCGGAA
GGCTTCCGCACCGGTAGGACCAGTACGGATGGTAGAAGGCCCTGCGGAGA
GATTGGAACGGTTTTGAATTGATGACTATCACAAAACCAAAACCAGAATG
TTTTTGCCGTCCAGTACTGTACCGTAGGACACGTAATGATACCGTGAGAG
CGCGAATCGCAGGTAGAGCCGTGTCGTACATCAGGTATCAGGGCGCAAGC
AGCGGCGAGGGGCGACTCCAGAGATGCCCAATGGTTCTGTGGCGCTTTTT
TCAGGCAAAAGAGATGGAATGTAACATCAGTGACGGTGGTGCGCGCGTTG
AGTGTTTTTTGTTTGACACCTAAAATCTTGCGCGGCGGGTAGGTATGTAC
TGAGGTTTGGTACCTTGACAAATGCGGACAAAGCGCGGGGAGGATCAAAC
AACGTTACACACTCTGACAGGGACTTGGGGATGCTTCCGCTCGCCGATTA
TACAGGCTCCACGCTCCAGGCTCCATGCCATTTACCATGTTCACAAACGT
GAAGTTGAGCAAACGATTGGTCTTGGTGACTTTGGCCTGTTCTCTTGACC
TTACAGATCTTTAGAGTCCTCATTGCTCGTGAGTTGTAGCTCCGACCCGG
AGGTGGGGCTCTTCCAGAATATTCCCTTGCACATTCTAGCGACGTCCGTG
CCCCACTGCCTACTTACTGTAAGGGCCACTCCCCCCCCCTCTGGCAACCC
CGGAAAAGCCTCAAAACCAAAACCTGCTTTCCATTGAAGTTATTACTCCC
ATGTTGGCGGTATTGGAGCTGTCGGAAGAAAGTGGTTTGAAACAACACAC
AAAAAAAACGCAAGTAGTGTCGGGGTTACTCTGGCTCATGTTTGGATGTT
CGGTGTCAGATACCCCCATTGAATACTTTCTATTTCGCCGGTTGCTGTTG
ATGGGTGAGAATATTGTGTTTTGATGCCTCTTCTCGCGATTGTGTTTTAT
CTCCCAGAGAGCTCTGCATGTTGTCGAATGGCCGATGATAAAATAATACT
CCGCGGAGTAATTGTTAGATTTCCGACGTGTCTGTCGTGTCTGTCGCGTA
CCGGACACCTAAGATGCCGTGACTACTTCCGAAGGAAGTGACACAGTGTT
TCGCCCTCTACCCCGGGGAAACCTCCATCTTGATACGCAAAAAAAAACTT
ACTCTAGGTGTGCC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10095:2..2615+

>mRNA_E-fasciculatus_F_contig10095.102.1 ID=mRNA_E-fasciculatus_F_contig10095.102.1|Name=mRNA_E-fasciculatus_F_contig10095.102.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=960bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10095:2..2615+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGACCGGTGCCGAATCTGGGAGCAAGTGCGCTTTGGGGCACGCCCTTTG
CACCTCCTGTACCACTCAGTACGTGAAAGCAACGTTGTTTTCGCAAGGCA
CCGTGCGTTGGGACAAGATCGTTTGCATGGGTCCGGAATGCACGGCGTGC
ATGGGAGGAGCGAGCGTTCGGCACTGCATCAGCCATGAGCTCGTGGCGAG
TATCGATGCTGCTCAGCCTAAAGCTGTACCTTCGGTTGGGCCGGAACACG
GAGGCGGCTTCGGTCGCGCGGTGGGGGCGGGGGCGCCTAAGTTTCTCGAG
CACGATCGGGCGTCGGAGGCAGCCGTGGTGGAGTTGTTCAAGCCGTGTCC
GAAGTGCAAGGTGCCGACTGAGAAGGTCGGAGGGTCTGATCACATGACCT
GTGTGTGCAAGCATGAGTACTATTGGAGCTGCCAGTGCGTTTACCCTACT
GCGCGGCACGTGTCTTGCGTTCCGCGGTGAATGACCGGTGCCGAATCTGG
GAGCAAGTGCGCTTTGGGGCACGCCCTTTGCACCTCCTGTACCACTCAGT
ACGTGAAAGCAACGTTGTTTTCGCAAGGCACCGTGCGTTGGGACAAGATC
GTTTGCATGGGTCCGGAATGCACGGCGTGCATGGGAGGAGCGAGCGTTCG
GCACTGCATCAGCCATGAGCTCGTGGCGAGTATCGATGCTGCTCAGCCTA
AAGCTGTACCTTCGGTTGGGCCGGAACACGGAGGCGGCTTCGGTCGCGCG
GTGGGGGCGGGGGCGCCTAAGTTTCTCGAGCACGATCGGGCGTCGGAGGC
AGCCGTGGTGGAGTTGTTCAAGCCGTGTCCGAAGTGCAAGGTGCCGACTG
AGAAGGTCGGAGGGTCTGATCACATGACCTGTGTGTGCAAGCATGAGTAC
TATTGGAGCTGCCAGTGCGTTTACCCTACTGCGCGGCACGTGTCTTGCGT
TCCGCGGTGA
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