mRNA_E-fasciculatus_F_contig10094.100.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10094.100.1
Unique NamemRNA_E-fasciculatus_F_contig10094.100.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10094.100.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10094contigE-fasciculatus_F_contig10094:1467..2678 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons2
Model size776
Cds size495
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10094.100.1prot_E-fasciculatus_F_contig10094.100.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10094 1527..2457 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927511.049461-UTR-E-fasciculatus_F_contig10094:1466..15261622927511.049461-UTR-E-fasciculatus_F_contig10094:1466..1526Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10094 1467..1526 +
1695995571.492565-UTR-E-fasciculatus_F_contig10094:1466..15261695995571.492565-UTR-E-fasciculatus_F_contig10094:1466..1526Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10094 1467..1526 +
1622927511.0837018-UTR-E-fasciculatus_F_contig10094:2457..26781622927511.0837018-UTR-E-fasciculatus_F_contig10094:2457..2678Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10094 2458..2678 +
1695995571.5278344-UTR-E-fasciculatus_F_contig10094:2457..26781695995571.5278344-UTR-E-fasciculatus_F_contig10094:2457..2678Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10094 2458..2678 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927511.0586338-CDS-E-fasciculatus_F_contig10094:1526..18661622927511.0586338-CDS-E-fasciculatus_F_contig10094:1526..1866Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10094 1527..1866 +
1695995571.502006-CDS-E-fasciculatus_F_contig10094:1526..18661695995571.502006-CDS-E-fasciculatus_F_contig10094:1526..1866Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10094 1527..1866 +
1622927511.0720336-CDS-E-fasciculatus_F_contig10094:2302..24571622927511.0720336-CDS-E-fasciculatus_F_contig10094:2302..2457Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10094 2303..2457 +
1695995571.5113056-CDS-E-fasciculatus_F_contig10094:2302..24571695995571.5113056-CDS-E-fasciculatus_F_contig10094:2302..2457Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10094 2303..2457 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10094.100.1

>prot_E-fasciculatus_F_contig10094.100.1 ID=prot_E-fasciculatus_F_contig10094.100.1|Name=mRNA_E-fasciculatus_F_contig10094.100.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=165bp
MPVSRVVTWWQLARRNPRNLPEAGGLVLPARSVDFQTAGGIIIQRSRVWE
ARSVWVLSAWERFNTSSLKIVVPSYLSPLVNYGSLFEGGGQVLQKKLETK
QDRKTFWHRKENEAGARDQETLTPAEHQAETRETRARVDDVDNQVDYVKA
EVAALKQQQAGKCT*
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mRNA from alignment at E-fasciculatus_F_contig10094:1467..2678+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10094.100.1 ID=mRNA_E-fasciculatus_F_contig10094.100.1|Name=mRNA_E-fasciculatus_F_contig10094.100.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1212bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10094:1467..2678+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
AGATGTCAGCGATGGAGAAGCGAGTGCCAGAAGGTGACTGCGAGCCGTGC
GACACGGTGAATGCCGGTAAGCAGAGTTGTGACATGGTGGCAGTTGGCAC
GGCGAAACCCACGAAATCTCCCAGAAGCAGGCGGGCTAGTGTTACCGGCC
AGATCAGTTGACTTCCAAACCGCGGGTGGAATTATCATTCAAAGAAGTAG
GGTTTGGGAAGCCAGATCTGTTTGGGTCCTTTCTGCCTGGGAACGATTCA
ACACGTCGTCGTTGAAGATTGTGGTTCCGTCGTACTTGTCTCCCTTGGTG
AATTACGGCTCGCTGTTCGAAGGAGGAGGACAGGTCCTCCAGAAGAAGCT
CGAGACGAAGCAGGACCGCAAGACGTTTTGGCATCGAAAGGAGAATGAAG
GTGCATACGCGTTGATGCAGCTGGGTGACTCTTTGAACCGCCTTTAGAAC
TACCCCTGGCACAGCGAGATAGGACCTGTGGGTGGACCTGTGGTACCCAT
GCGGTAGTGGTGGCTGTGTTTGAAGCTTCTCTCGAAGGCTACCCGATTTC
GCTGTTCGTTCTTGGAACCAACAAGCGTTCGGTGTAGATTGTGCGAAAGG
TGATCGAAGAAGGGCGGTTTCCCCGACGGGTCCTGTGCAAACCGGACCCG
TCGCGAGGAAGTCGGGTGCCAAAACTTGTCGTGCCACACCTCGTCGTGCC
TCGCGCTTTGGTTGTAGCCCGTCGCAAAGGCATGTCCACACGATTTGAAT
TCGCTGTTCCTTTGGCGCATCACGTTTAATGCTCGTGTTTCTTGAGAATG
ATGCTGGTCCCTCTCATTGTTCCCGTTTTTCCTCAGCCGGTGCTAGAGAC
CAGGAGACGCTCACCCCCGCTGAACACCAAGCCGAAACACGAGAAACGCG
AGCTCGTGTGGACGATGTCGACAACCAGGTGGACTATGTGAAGGCAGAGG
TTGCCGCCCTCAAGCAACAGCAAGCAGGCAAGTGTACATAGCTTGGCACC
ACTAGACTATACGACGTTTGCACTTAGAGCACCAGCCGCACTCGTTTTCC
CAATTGCACACCGCACGCCGACACTATCACCATCCTCTTCATGTCCAATT
ACCTGTCTTCGTCACCCACCGTTCGCAGGGAAAAAATGGGGTTTCTTACG
ACGCGGGCGCCACCGTCGCTGACGTTTTTCGACAACTACGGGAACTTGGC
ATGGCGAAGAGT
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10094:1467..2678+

>mRNA_E-fasciculatus_F_contig10094.100.1 ID=mRNA_E-fasciculatus_F_contig10094.100.1|Name=mRNA_E-fasciculatus_F_contig10094.100.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=990bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10094:1467..2678+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGCCGGTAAGCAGAGTTGTGACATGGTGGCAGTTGGCACGGCGAAACCC
ACGAAATCTCCCAGAAGCAGGCGGGCTAGTGTTACCGGCCAGATCAGTTG
ACTTCCAAACCGCGGGTGGAATTATCATTCAAAGAAGTAGGGTTTGGGAA
GCCAGATCTGTTTGGGTCCTTTCTGCCTGGGAACGATTCAACACGTCGTC
GTTGAAGATTGTGGTTCCGTCGTACTTGTCTCCCTTGGTGAATTACGGCT
CGCTGTTCGAAGGAGGAGGACAGGTCCTCCAGAAGAAGCTCGAGACGAAG
CAGGACCGCAAGACGTTTTGGCATCGAAAGGAGAATGAAGATGCCGGTAA
GCAGAGTTGTGACATGGTGGCAGTTGGCACGGCGAAACCCACGAAATCTC
CCAGAAGCAGGCGGGCTAGTGTTACCGGCCAGATCAGTTGACTTCCAAAC
CGCGGGTGGAATTATCATTCAAAGAAGTAGGGTTTGGGAAGCCAGATCTG
TTTGGGTCCTTTCTGCCTGGGAACGATTCAACACGTCGTCGTTGAAGATT
GTGGTTCCGTCGTACTTGTCTCCCTTGGTGAATTACGGCTCGCTGTTCGA
AGGAGGAGGACAGGTCCTCCAGAAGAAGCTCGAGACGAAGCAGGACCGCA
AGACGTTTTGGCATCGAAAGGAGAATGAAGCCGGTGCTAGAGACCAGGAG
ACGCTCACCCCCGCTGAACACCAAGCCGAAACACGAGAAACGCGAGCTCG
TGTGGACGATGTCGACAACCAGGTGGACTATGTGAAGGCAGAGGTTGCCG
CCCTCAAGCAACAGCAAGCAGGCAAGTGTACATAGCCGGTGCTAGAGACC
AGGAGACGCTCACCCCCGCTGAACACCAAGCCGAAACACGAGAAACGCGA
GCTCGTGTGGACGATGTCGACAACCAGGTGGACTATGTGAAGGCAGAGGT
TGCCGCCCTCAAGCAACAGCAAGCAGGCAAGTGTACATAG
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