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Homology
BLAST of mRNA_E-fasciculatus_F_contig10092.98.1 vs. uniprot
Match: A0A6H5KEF4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KEF4_9PHAE) HSP 1 Score: 268 bits (684), Expect = 1.580e-75 Identity = 242/377 (64.19%), Postives = 253/377 (67.11%), Query Frame = 1 Query: 274 MVPEETTTTEASEWPSLLSSFTGML-EGRVLNVFGSNDGAAAAPEGSS-SRPEQDSQQVQEEAGQTSRTQEGGEPAVPSATEPAVALETDLPELGRLERSITVDDLLPRHEPAPRSGNHMVGNNARRSDGRVAEKVMAMEARRAXXXXXXXXXXXXXXXXXXX--PLRPNGAXXXRPTGGGLRPASSNISGISAAPTTTAYYNGVSPCGGG-VTGASGA--TRRWAHAGGGAAGSSASTVVPGISPVAADARMEVISGFGSTSAGAIKKRHPATADARSSSMNXXXXXXXXXSSIPPPLDLSAIPGPTPXXVRGGXXXXXXXXXRGSFTSSGSCSS-----SNNPVVLQGAALESLRRLGRPGSSVSDRSRGTAGSG 1368
MVPEET T EASEWPSLLSSFTGML EGR+L VFGSND AAAA EG SRPE S+Q +EE GQ SR+QE +P V SATEPAV LETDLPELGRLERS+T DDLLPR EPAP SGN M GNN R SDGRVA KV AMEARR XXXXXXXXXXXXX PLRP+G XXX A Y GVSPCGGG +TGA+GA T+RWA AGGGA GSSASTVVPGISPVA DAR E GFGS SAG IKK PATAD XXXXXXXXX XX XXXXXXXXX SN PVVLQGAALESLRRLGRPGS+VSDRSRGTAGSG
Sbjct: 1 MVPEET-TAEASEWPSLLSSFTGMLMEGRMLGVFGSNDRAAAASEGDEGSRPEH-SRQGEEEEGQGSRSQEN-KPVVSSATEPAV-LETDLPELGRLERSMTADDLLPRREPAPPSGNQMAGNNNRLSDGRVAGKVTAMEARRTXXXXXXXXXXXXXKLFTPATRPLRPSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXACYKGVSPCGGGGITGAAGAGATQRWARAGGGATGSSASTVVPGISPVAPDARTEAGRGFGSISAGGIKKTLPATADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNKPVVLQGAALESLRRLGRPGSAVSDRSRGTAGSG 373
BLAST of mRNA_E-fasciculatus_F_contig10092.98.1 vs. uniprot
Match: D8LQT8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQT8_ECTSI) HSP 1 Score: 209 bits (531), Expect = 3.010e-55 Identity = 201/377 (53.32%), Postives = 207/377 (54.91%), Query Frame = 1 Query: 274 MVPEETTTTEASEWPSLLSSFTGML-EGRVLNVFGSNDGAAAAPEGSSSRPEQDSQQVQEEA----GQTSRTQEGGEPAVPSATEPAVALETDLPELGRLERSITVDDLLPRHEPAPRSGNHMVGNNARRSDGRVAEKVMAMEARRAXXXXXXXXXXXXXXXXXXXPLRPNGAXXXRPTGGGLRPASSNISGISAAPTTTAYYNGVSPCGGGVTGASGA-----TRRWAHAGGGAAGSSASTVVPGISPVAADARMEVISGFGSTSAGAIKKRHPATADARSSSMNXXXXXXXXXSSIPPPLDLSAIPGPTPXXVRGGXXXXXXXXXRGSFTSSGSCSSSNNPVVLQGAALESLRRLGRPGSSVSDRSRGTAGSGRG 1374
MVPEET T E SEWPSLLSSFTGML EGRVL VFGS+DGAAAAPEGS RPE S+QV+E GQ SR++E +P V S TEPA ALETDLPELGRLERSITVDDLLPR EPAP SGNHM PLRPNGA X GVSP TRRWA GSSASTVVPGISPVA DAR E GFGS SAG IKK PATAD XXXXXXXXX XX XXXXXXXXX SN PVVLQGAALESLRRLGRPGSSVSDRSRGTAGSGRG
Sbjct: 1 MVPEET-TAEVSEWPSLLSSFTGMLMEGRVLGVFGSHDGAAAAPEGS--RPEH-SRQVEEXXXXXXGQASRSEEN-KPTVSSTTEPA-ALETDLPELGRLERSITVDDLLPRREPAPPSGNHM-----------------------------------------ERPLRPNGAGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVSPXXXXXXXXXXXXXXXXTRRWARXXXXXTGSSASTVVPGISPVAPDARTEAGRGFGSISAGGIKKTLPATADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSNKPVVLQGAALESLRRLGRPGSSVSDRSRGTAGSGRG 330
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 1375 |
| Cds size | 1101 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10092.98.1 >prot_E-fasciculatus_F_contig10092.98.1 ID=prot_E-fasciculatus_F_contig10092.98.1|Name=mRNA_E-fasciculatus_F_contig10092.98.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=367bp
MVPEETTTTEASEWPSLLSSFTGMLEGRVLNVFGSNDGAAAAPEGSSSRP
EQDSQQVQEEAGQTSRTQEGGEPAVPSATEPAVALETDLPELGRLERSIT
VDDLLPRHEPAPRSGNHMVGNNARRSDGRVAEKVMAMEARRAAAAAAAPA
AATRKQLTPPKPLRPNGAAAARPTGGGLRPASSNISGISAAPTTTAYYNG
VSPCGGGVTGASGATRRWAHAGGGAAGSSASTVVPGISPVAADARMEVIS
GFGSTSAGAIKKRHPATADARSSSMNSNGNMNSNASSIPPPLDLSAIPGP
TPPPVRGGGAGGAGGGSRGSFTSSGSCSSSNNPVVLQGAALESLRRLGRP
GSSVSDRSRGTAGSGRG back to topmRNA from alignment at E-fasciculatus_F_contig10092:66..4026+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig10092.98.1 ID=mRNA_E-fasciculatus_F_contig10092.98.1|Name=mRNA_E-fasciculatus_F_contig10092.98.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=3961bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10092:66..4026+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CTATAAGAAACGCGGAGCAGCGATCAGGGCAGCAAAGCCGGAAGGCGGTC
TCGGTTGCCACCGGGTTGTACAACAGCACGCCTTGCACGGCGGTTCCTCA
CGCTACAAGAGCGTTACAGGGGACGACTACCCCCATTTCAACCTCTCTCT
GCTGCTTTATAGTTACGCGCGCGACACGCCGCCGCATCATCTCAACGGTT
CTTCTTTTTTGCTCGGGAGGGCCGGCCCACATCTGCTGTGCCACCATCAC
CATCTCGTCCGTCGCGCTGCTAGATGGTGCCGGAGGAGACCACCACCACC
GAAGCGTCGGAATGGCCGTCCCTGCTCTCTTCCTTCACGGGGATGCTTGA
GGGGCGCGTACTGAACGTGTTTGGTTCGAACGACGGCGCGGCGGCGGCGC
CTGAGGGCAGCAGCAGCAGGCCGGAGCAAGACTCGCAGCAGGTGCAGGAG
GAGGCGGGGCAGACTTCGCGAACTCAAGAGGGGGGGGAGCCGGCAGTGCC
GAGCGCCACGGAGCCGGCGGTGGCGCTGGAGACCGACCTGCCGGAGCTGG
GGCGGCTAGAGCGAAGCATAACCGTCGACGACTTGCTGCCGCGTCACGAG
CCGGCGCCTCGGAGCGGCAACCACATGGTGGTCAGTTCAAAAAAACAAGC
TAGACGATCAAAATCATGCGTGAGCTTCCACATATTTAGCTCTTCACGGC
TTTTTCTCTTTATCAGCAAGTTTCTATGAGGTCTGCGTGTTGTGCTGTTT
TTTCCCATGTTTTGCCTCTTTCACGTGACGAACGTACATATCATTCAGGT
CAGGGGTGCGCGCGGCCTCATGTCAAAATATCCGCCTCTCCGCTTTGCTC
TNNNNNNNNNNCCGAGCTCGCACTGCTGTGCCCTGAGATGAACAGTAGCC
CCCTCTCTGGCTGCCGGCCTTTTAATTCCACATCGGGGTGTGTGCGTAGC
AGGCGGCGGTGGAAGGATGCCCACCACACCACCCAAAACCCCAGTGTTCT
ATCTGTCCTCTACAAATTCTCTTCCCGCATGGTGCCGGGCAAGTTACTCC
GCTCCTTGGCGCGTCGGCGGCCGTCCGTACCCGCAGGGACTGGGCCCGAG
CCGTCGAATTATTTTTACGTTAGCAAAGAANNNNNNNNNNACCATCGCGA
TGGCGGTGGCGGCGGCGGCGGGCTCGCCAGCAGAACATGTTTCCTCAAGC
TTGTTTACCATAGCGCTCTTGTGGGCGCGCAACACAGCAGCAGCTTGCTT
CGGCGTGTTTTCTTGCCCCATGGGCACACACCCGAGCTGGCTGCTGCTGT
GTAGGCATCACACACACCCTAGAATACCCGTGTTCCCTCCGCAAGCTGCC
CCCTCCACCTCATGTTTGTTGCCATCATGAAAACATGCGTACATACCTTT
CCGCAGGGCAACAACGCCCGCCGGTCTGATGGCCGCGTTGCGGAGAAGGT
CATGGCCATGGAGGCAAGACGAGCAGCAGCAGCGGCAGCGGCACCAGCAG
CAGCGACAAGAAAGCAGCTCACGCCCCCGAAGGTATGTTACGTTCGTTCG
GCAAGTTATCTTTGTCCGCTGCCGACACCACACGGCCGTTTGCGGCGTGC
ATGTGTACGTGTTTTTGGAAAGTCTTTGTTCGATGGTGTTTTTTTGCCTC
AGAAAATACATTTTTTGCCTCAGAAAATACACATGTGCAATCGAGAGAAC
ACTACTGCTTGGATAACAAGGTGGGGCAATAAACAATCAGAGGGAAACGC
TCCTGTTTGCCCTTCCTCTCGTGCGACCCCGGCCGATACGTGAGGTAGGT
ACGCCGAACAGGCCTGTAAACTGGCTCCAGAATAGACGGGACGAGCAATA
CACACACATAGACCCACAGCAGCAGTCAAGTCTCCAAGTCGAGGTATTTG
TTAATTATCTTGCGGGAGGCGCCGAGACAAGAAAGAGGACGAATGCGGAG
CAAGATTTTCCCTAAAATTTGTATCTATTTGTAGAGCCAAACGGATTTTT
TTTGCGGCGAGAGTACACGGGCGGGCCGAGAGACAGCCACAGCGAGAGAG
AGGTGGACGGTATCTCACTCTTGATATTGTACCACTGCTGCTAGGCAACT
GCTGCAGCTGCCGGGCTCAAAAACATCCGCACGGGATGGTTGAAAAGGTC
GTTGCTGTGGTGGTTCAGGGATGTCAAGGTTCAGAGCTTTTTCGCAAAAA
TGCAAGAATAGCCCGGTTGGTTTTTTGGGCGGCAAGGAGTGAAGAATCAC
GGTAGATAGTTGTGCCGCCCGCCGCACGTGCTCGCCTTCGTTTCTTGCTG
GCGAGCACAAGAATACGGCGTGCCCGCGAGAGCCGGTGGGCGCTACTGGC
TGTAGGAGGTGTCTTTGACCACACGACCTGTCTGTTGTATCTAGGCCCCC
TCTCAAGCAACCGCATCCGATGGTCTCTCACGCTCGCTCTCCATGGGTAC
CTACCGCACATTGTTGACCGAGCGTGCATGATTACGAGACCACAAACAAA
ACATAAAGGACTGACTTCCCTCTGGTACACGCAACACACACATGCGCGCG
CATCACACAACATTATTCCGTCCCCACCCAAGTCACACATGACGGCAAAA
AATTCCAACCCCCAGCAAGTAACTCGGCTGGCCATAGTAAAACATCAACA
AAAAGACTTCCCGCTCGGTACCCCATTAACAGTGCTGTATCTTACGCCCT
TGTGACCATGTTGGAAAACCCACTTTGCCATTCTTGTCTCCCTCTGACGG
TGGTACGCTACCCTCTCCGCAGAATACTGCGAAACGGCGACACCACTGCT
GCTGCTTGCGGCGGTACGCACGCATGCATACGACGCCTATGTCGGTTTGT
TTCTTGACAAAAATTTGAAAGCACTGACTCTCGGACAAACAGCAGAAGGA
GGGAGGGTGGCGAATGCAAACGCGGGCACACCGCCGTCCCTCTCTTGTAA
TGCGAGAATCGCGGAGTGCCTCAGTGATGTAGCCGTTGGGCGTTGGGCGT
TACTTGGAGGAGGTACTTGTATCGTTTACTCTTGGAGAATTTTTTTTTCT
CTCTCCGCCTCGGTCTGGTGCAGTTCTCGCAGCGTTTTGTGCATGCATAG
CTCCTCTGAACACAGCCAGCTAACTGCTGTAAATTATGCCCAAGCGGAGA
AATCCGTGCCTGCACACAAGGCTCCCGAACCGTAAGAACGCCATGTCAGG
TCTCGGGCGAGCTCTCTGTACGCGTTAAGCACGTGCGTGACACCCTCTTA
CAATCCCGGCGGGCCCAAGCAAGCCTATGGTTCAAGACGTTCAATTAGTC
CCACTGATCGATCCCTTCTCTACTCTTTGCCTTCCCCCAGCAGCCGTTGC
GACCCAACGGCGCGGCGGCGGCCCGCCCCACCGGTGGGGGGTTGAGACCC
GCTTCTTCCAACATTTCCGGCATCTCGGCTGCACCCACGACGACGGCGTA
CTACAACGGGGTTTCCCCATGCGGAGGCGGCGTCACGGGCGCCTCCGGCG
CTACCCGGAGGTGGGCGCACGCTGGCGGAGGGGCCGCCGGCTCGAGCGCG
TCGACGGTGGTTCCGGGGATATCGCCGGTCGCGGCCGACGCGCGGATGGA
GGTGATCAGCGGCTTCGGGTCTACCTCCGCGGGAGCGATCAAAAAGAGAC
ACCCCGCCACCGCCGACGCGCGCAGCAGCAGCATGAACAGCAACGGCAAC
ATGAACAGCAACGCGAGCAGCATCCCGCCCCCGCTGGACCTGTCCGCGAT
CCCGGGGCCTACCCCGCCCCCGGTCCGCGGCGGCGGCGCCGGCGGCGCCG
GCGGAGGCAGCCGCGGCTCCTTCACCTCGTCGGGTTCTTGCTCCTCTTCC
AACAACCCCGTGGTGCTCCAGGGCGCCGCGCTCGAGAGCCTGAGGCGCCT
CGGGCGACCGGGCTCTTCCGTGAGCGACCGGAGCAGGGGGACGGCGGGGT
CCGGGCGAGGG back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig10092:66..4026+ >mRNA_E-fasciculatus_F_contig10092.98.1 ID=mRNA_E-fasciculatus_F_contig10092.98.1|Name=mRNA_E-fasciculatus_F_contig10092.98.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=2202bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10092:66..4026+ (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGTGCCGGAGGAGACCACCACCACCGAAGCGTCGGAATGGCCGTCCCT
GCTCTCTTCCTTCACGGGGATGCTTGAGGGGCGCGTACTGAACGTGTTTG
GTTCGAACGACGGCGCGGCGGCGGCGCCTGAGGGCAGCAGCAGCAGGCCG
GAGCAAGACTCGCAGCAGGTGCAGGAGGAGGCGGGGCAGACTTCGCGAAC
TCAAGAGGGGGGGGAGCCGGCAGTGCCGAGCGCCACGGAGCCGGCGGTGG
CGCTGGAGACCGACCTGCCGGAGCTGGGGCGGCTAGAGCGAAGCATAACC
GTCGACGACTTGCTGCCGCGTCACGAGCCGGCGCCTCGGAGCGGCAACCA
CATGGTGATGGTGCCGGAGGAGACCACCACCACCGAAGCGTCGGAATGGC
CGTCCCTGCTCTCTTCCTTCACGGGGATGCTTGAGGGGCGCGTACTGAAC
GTGTTTGGTTCGAACGACGGCGCGGCGGCGGCGCCTGAGGGCAGCAGCAG
CAGGCCGGAGCAAGACTCGCAGCAGGTGCAGGAGGAGGCGGGGCAGACTT
CGCGAACTCAAGAGGGGGGGGAGCCGGCAGTGCCGAGCGCCACGGAGCCG
GCGGTGGCGCTGGAGACCGACCTGCCGGAGCTGGGGCGGCTAGAGCGAAG
CATAACCGTCGACGACTTGCTGCCGCGTCACGAGCCGGCGCCTCGGAGCG
GCAACCACATGGTGGGCAACAACGCCCGCCGGTCTGATGGCCGCGTTGCG
GAGAAGGTCATGGCCATGGAGGCAAGACGAGCAGCAGCAGCGGCAGCGGC
ACCAGCAGCAGCGACAAGAAAGCAGCTCACGCCCCCGAAGGGCAACAACG
CCCGCCGGTCTGATGGCCGCGTTGCGGAGAAGGTCATGGCCATGGAGGCA
AGACGAGCAGCAGCAGCGGCAGCGGCACCAGCAGCAGCGACAAGAAAGCA
GCTCACGCCCCCGAAGCCGTTGCGACCCAACGGCGCGGCGGCGGCCCGCC
CCACCGGTGGGGGGTTGAGACCCGCTTCTTCCAACATTTCCGGCATCTCG
GCTGCACCCACGACGACGGCGTACTACAACGGGGTTTCCCCATGCGGAGG
CGGCGTCACGGGCGCCTCCGGCGCTACCCGGAGGTGGGCGCACGCTGGCG
GAGGGGCCGCCGGCTCGAGCGCGTCGACGGTGGTTCCGGGGATATCGCCG
GTCGCGGCCGACGCGCGGATGGAGGTGATCAGCGGCTTCGGGTCTACCTC
CGCGGGAGCGATCAAAAAGAGACACCCCGCCACCGCCGACGCGCGCAGCA
GCAGCATGAACAGCAACGGCAACATGAACAGCAACGCGAGCAGCATCCCG
CCCCCGCTGGACCTGTCCGCGATCCCGGGGCCTACCCCGCCCCCGGTCCG
CGGCGGCGGCGCCGGCGGCGCCGGCGGAGGCAGCCGCGGCTCCTTCACCT
CGTCGGGTTCTTGCTCCTCTTCCAACAACCCCGTGGTGCTCCAGGGCGCC
GCGCTCGAGAGCCTGAGGCGCCTCGGGCGACCGGGCTCTTCCGTGAGCGA
CCGGAGCAGGGGGACGGCGGGGTCCGGGCGAGGGCCGTTGCGACCCAACG
GCGCGGCGGCGGCCCGCCCCACCGGTGGGGGGTTGAGACCCGCTTCTTCC
AACATTTCCGGCATCTCGGCTGCACCCACGACGACGGCGTACTACAACGG
GGTTTCCCCATGCGGAGGCGGCGTCACGGGCGCCTCCGGCGCTACCCGGA
GGTGGGCGCACGCTGGCGGAGGGGCCGCCGGCTCGAGCGCGTCGACGGTG
GTTCCGGGGATATCGCCGGTCGCGGCCGACGCGCGGATGGAGGTGATCAG
CGGCTTCGGGTCTACCTCCGCGGGAGCGATCAAAAAGAGACACCCCGCCA
CCGCCGACGCGCGCAGCAGCAGCATGAACAGCAACGGCAACATGAACAGC
AACGCGAGCAGCATCCCGCCCCCGCTGGACCTGTCCGCGATCCCGGGGCC
TACCCCGCCCCCGGTCCGCGGCGGCGGCGCCGGCGGCGCCGGCGGAGGCA
GCCGCGGCTCCTTCACCTCGTCGGGTTCTTGCTCCTCTTCCAACAACCCC
GTGGTGCTCCAGGGCGCCGCGCTCGAGAGCCTGAGGCGCCTCGGGCGACC
GGGCTCTTCCGTGAGCGACCGGAGCAGGGGGACGGCGGGGTCCGGGCGAG
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