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Homology
BLAST of mRNA_E-fasciculatus_F_contig10088.93.1 vs. uniprot
Match: D7FVR6_ECTSI (Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVR6_ECTSI) HSP 1 Score: 252 bits (643), Expect = 6.280e-77 Identity = 128/133 (96.24%), Postives = 129/133 (96.99%), Query Frame = 1 Query: 1 QVFVFGPDRKIWELDKGSATAGDALGRSYMQKFYEGALLHDRRNIKSDAKGQRAKRKTRTAWVNGREVDASYLLKNGDVFDVAQASHQAPEDVSQDASGKQPSAKDGKPRNPAEERSSSSWRALSAPPTRGLT 399
+VFVFGPDRKIWELDKGSATAGDALGRSYMQKFYEGALLHDRR IKSDAKGQ AKRKTRTAWVNGREVDASYLLKNGDVFDVAQASHQAPED SQDASGKQPSAKDGKPRNPAEE SSSSWRALSAPPTRGLT
Sbjct: 670 KVFVFGPDRKIWELDKGSATAGDALGRSYMQKFYEGALLHDRRKIKSDAKGQGAKRKTRTAWVNGREVDASYLLKNGDVFDVAQASHQAPEDASQDASGKQPSAKDGKPRNPAEESSSSSWRALSAPPTRGLT 802
BLAST of mRNA_E-fasciculatus_F_contig10088.93.1 vs. uniprot
Match: A0A6H5KUK5_9PHAE (RelA_SpoT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUK5_9PHAE) HSP 1 Score: 211 bits (537), Expect = 1.010e-61 Identity = 124/198 (62.63%), Postives = 125/198 (63.13%), Query Frame = 1 Query: 1 QVFVFGPDRKIWELDKGSATAGDALGRSYMQKFYEGALLHDRRNIKSDAKGQRAKRKTRTAWVNGREV------------------------------------------------------------------DASYLLKNGDVFDVAQASHQAPEDVSQDASGKQPSAKDGKPRNPAEERSSSSWRALSAPPTRGL 396
+VFVFGPDRKIWELDKGSATAGDALGRSYMQKFYEGALLHDRRNIKS AKGQ AKRKTRTAWVNGREV DASYLLKNGDVFDVAQ SHQAPED SQDAS KQPSAKDGK RNPAEE SSSSWRALSAPPTRGL
Sbjct: 587 KVFVFGPDRKIWELDKGSATAGDALGRSYMQKFYEGALLHDRRNIKSGAKGQGAKRKTRTAWVNGREVCAVISITVPEISAREYIRKHLHFTLCHVLSGRFLSLPRQCPLLGDGFEDVLFFFTICECGQFVHHVDASYLLKNGDVFDVAQTSHQAPEDSSQDASEKQPSAKDGKRRNPAEESSSSSWRALSAPPTRGL 784
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 254.2 |
| Seed ortholog evalue | 3.4e-65 |
| Seed eggNOG ortholog | 2880.D7FVR6 |
| KEGG rclass | RC00002,RC00078 |
| KEGG ko | ko:K00951 |
| KEGG Reaction | R00429 |
| KEGG Pathway | ko00230,map00230 |
| EggNOG free text desc. | HD domain containing 3 |
| EggNOG OGs | COG0317@1,KOG1157@2759 |
| EC | 2.7.6.5 |
| COG Functional cat. | KT |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| BRITE | ko00000,ko00001,ko01000 |
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase |
| Ec32 ortholog | Ec-03_003250.1 |
| Exons | 2 |
| Model size | 408 |
| Cds size | 408 |
| Stop | 1 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10088.93.1 >prot_E-fasciculatus_F_contig10088.93.1 ID=prot_E-fasciculatus_F_contig10088.93.1|Name=mRNA_E-fasciculatus_F_contig10088.93.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=136bp
QVFVFGPDRKIWELDKGSATAGDALGRSYMQKFYEGALLHDRRNIKSDAK
GQRAKRKTRTAWVNGREVDASYLLKNGDVFDVAQASHQAPEDVSQDASGK
QPSAKDGKPRNPAEERSSSSWRALSAPPTRGLTAD* back to topmRNA from alignment at E-fasciculatus_F_contig10088:3790..4759- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig10088.93.1 ID=mRNA_E-fasciculatus_F_contig10088.93.1|Name=mRNA_E-fasciculatus_F_contig10088.93.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=970bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10088:3790..4759- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGTGTTCGTATTCGGGCCTGATAGAAAGATCTGGGAGCTGGACAAGGG
TTCGGCGACAGCGGGGGACGCCTTGGGGCGATCGTACATGCAAAAGTTCT
ACGAAGGAGCCTTGCTGCACGACCGAAGAAATATTAAGTCAGACGCCAAG
GGACAACGCGCAAAAAGGAAGACACGTACTGCGTGGGTTAATGGCCGAGA
GGTGTGTGCCGTGCCTGCCGGCCTTACGTAGTCCTGGCGGTTTCAGAAAT
AAGTGCTCGGGAGTTCATAAGAAAGCACTTGGACTACATATGGTGCCCCG
TTCTGTTGGGTATGAAAATGACACGTTCACACCGGACACGACACGATTGT
CTTGGGGCTCGTGGATGCATCCGTGCAGCACTTTGGCGCTGCCACCATCA
CACACACATCGGGGGATGTGGCGGTGAAGGTATTGTAGGCAAGTCACGTA
AGCCGCTCACGAACTCTACGTCAAATACGACCATGACGATGTTGTTGATG
GCTGTCTTTGGAGATTGGGGGGCTATTTTCTCAGGGGAAGGGACCCGCGT
TCTCAAATCTATTTGTCTGTGGTCGCAGGATGACATTTGACGTGTCGTAG
GGTTCAACACAGGCCGATTCCTACAATATCCCTCCCGCGCCAGTACCGCC
TCCTCCGCGATTGCTTCGAGGATGTGGTATTTTATTTTGACGATTTGTAT
ACGGTCAGTTTGTTCACCATGGATGTTGCATCGTTTTTTGGCGACCCCTC
CCGGCGGCGCCAGGTGGACGCCAGCTATCTGCTCAAGAACGGGGATGTGT
TCGATGTGGCACAAGCCTCGCATCAAGCACCCGAAGACGTATCGCAAGAC
GCATCAGGGAAGCAACCTTCGGCAAAGGATGGAAAACCAAGAAATCCGGC
AGAAGAGCGCAGCAGCAGTAGCTGGAGAGCGCTCTCAGCGCCTCCCACTA
GAGGTCTGACGGCTGACTGA back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig10088:3790..4759- >mRNA_E-fasciculatus_F_contig10088.93.1 ID=mRNA_E-fasciculatus_F_contig10088.93.1|Name=mRNA_E-fasciculatus_F_contig10088.93.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=816bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10088:3790..4759- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGTGTTCGTATTCGGGCCTGATAGAAAGATCTGGGAGCTGGACAAGGG
TTCGGCGACAGCGGGGGACGCCTTGGGGCGATCGTACATGCAAAAGTTCT
ACGAAGGAGCCTTGCTGCACGACCGAAGAAATATTAAGTCAGACGCCAAG
GGACAACGCGCAAAAAGGAAGACACGTACTGCGTGGGTTAATGGCCGAGA
GCAGGTGTTCGTATTCGGGCCTGATAGAAAGATCTGGGAGCTGGACAAGG
GTTCGGCGACAGCGGGGGACGCCTTGGGGCGATCGTACATGCAAAAGTTC
TACGAAGGAGCCTTGCTGCACGACCGAAGAAATATTAAGTCAGACGCCAA
GGGACAACGCGCAAAAAGGAAGACACGTACTGCGTGGGTTAATGGCCGAG
AGGTGGACGCCAGCTATCTGCTCAAGAACGGGGATGTGTTCGATGTGGCA
CAAGCCTCGCATCAAGCACCCGAAGACGTATCGCAAGACGCATCAGGGAA
GCAACCTTCGGCAAAGGATGGAAAACCAAGAAATCCGGCAGAAGAGCGCA
GCAGCAGTAGCTGGAGAGCGCTCTCAGCGCCTCCCACTAGAGGTCTGACG
GCTGACTGAGTGGACGCCAGCTATCTGCTCAAGAACGGGGATGTGTTCGA
TGTGGCACAAGCCTCGCATCAAGCACCCGAAGACGTATCGCAAGACGCAT
CAGGGAAGCAACCTTCGGCAAAGGATGGAAAACCAAGAAATCCGGCAGAA
GAGCGCAGCAGCAGTAGCTGGAGAGCGCTCTCAGCGCCTCCCACTAGAGG
TCTGACGGCTGACTGA back to top
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