mRNA_E-fasciculatus_F_contig10088.93.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10088.93.1
Unique NamemRNA_E-fasciculatus_F_contig10088.93.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10088.93.1 vs. uniprot
Match: D7FVR6_ECTSI (Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVR6_ECTSI)

HSP 1 Score: 252 bits (643), Expect = 6.280e-77
Identity = 128/133 (96.24%), Postives = 129/133 (96.99%), Query Frame = 1 
Query:    1 QVFVFGPDRKIWELDKGSATAGDALGRSYMQKFYEGALLHDRRNIKSDAKGQRAKRKTRTAWVNGREVDASYLLKNGDVFDVAQASHQAPEDVSQDASGKQPSAKDGKPRNPAEERSSSSWRALSAPPTRGLT 399
            +VFVFGPDRKIWELDKGSATAGDALGRSYMQKFYEGALLHDRR IKSDAKGQ AKRKTRTAWVNGREVDASYLLKNGDVFDVAQASHQAPED SQDASGKQPSAKDGKPRNPAEE SSSSWRALSAPPTRGLT
Sbjct:  670 KVFVFGPDRKIWELDKGSATAGDALGRSYMQKFYEGALLHDRRKIKSDAKGQGAKRKTRTAWVNGREVDASYLLKNGDVFDVAQASHQAPEDASQDASGKQPSAKDGKPRNPAEESSSSSWRALSAPPTRGLT 802
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BLAST of mRNA_E-fasciculatus_F_contig10088.93.1 vs. uniprot
Match: A0A6H5KUK5_9PHAE (RelA_SpoT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUK5_9PHAE)

HSP 1 Score: 211 bits (537), Expect = 1.010e-61
Identity = 124/198 (62.63%), Postives = 125/198 (63.13%), Query Frame = 1 
Query:    1 QVFVFGPDRKIWELDKGSATAGDALGRSYMQKFYEGALLHDRRNIKSDAKGQRAKRKTRTAWVNGREV------------------------------------------------------------------DASYLLKNGDVFDVAQASHQAPEDVSQDASGKQPSAKDGKPRNPAEERSSSSWRALSAPPTRGL 396
            +VFVFGPDRKIWELDKGSATAGDALGRSYMQKFYEGALLHDRRNIKS AKGQ AKRKTRTAWVNGREV                                                                  DASYLLKNGDVFDVAQ SHQAPED SQDAS KQPSAKDGK RNPAEE SSSSWRALSAPPTRGL
Sbjct:  587 KVFVFGPDRKIWELDKGSATAGDALGRSYMQKFYEGALLHDRRNIKSGAKGQGAKRKTRTAWVNGREVCAVISITVPEISAREYIRKHLHFTLCHVLSGRFLSLPRQCPLLGDGFEDVLFFFTICECGQFVHHVDASYLLKNGDVFDVAQTSHQAPEDSSQDASEKQPSAKDGKRRNPAEESSSSSWRALSAPPTRGL 784
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10088.93.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FVR6_ECTSI6.280e-7796.24Guanosine-3',5'-bis(Diphosphate) 3'-pyrophosphohyd... [more]
A0A6H5KUK5_9PHAE1.010e-6162.63RelA_SpoT domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10088contigE-fasciculatus_F_contig10088:3790..4759 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score254.2
Seed ortholog evalue3.4e-65
Seed eggNOG ortholog2880.D7FVR6
KEGG rclassRC00002,RC00078
KEGG koko:K00951
KEGG ReactionR00429
KEGG Pathwayko00230,map00230
EggNOG free text desc.HD domain containing 3
EggNOG OGsCOG0317@1,KOG1157@2759
EC2.7.6.5
COG Functional cat.KT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionguanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
Ec32 orthologEc-03_003250.1
Exons2
Model size408
Cds size408
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927510.360512-CDS-E-fasciculatus_F_contig10088:3789..39961622927510.360512-CDS-E-fasciculatus_F_contig10088:3789..3996Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10088 3790..3996 -
1695995571.0053177-CDS-E-fasciculatus_F_contig10088:3789..39961695995571.0053177-CDS-E-fasciculatus_F_contig10088:3789..3996Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10088 3790..3996 -
1622927510.3767576-CDS-E-fasciculatus_F_contig10088:4558..47591622927510.3767576-CDS-E-fasciculatus_F_contig10088:4558..4759Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10088 4559..4759 -
1695995571.0243113-CDS-E-fasciculatus_F_contig10088:4558..47591695995571.0243113-CDS-E-fasciculatus_F_contig10088:4558..4759Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10088 4559..4759 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10088.93.1prot_E-fasciculatus_F_contig10088.93.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10088 3790..4759 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10088.93.1

>prot_E-fasciculatus_F_contig10088.93.1 ID=prot_E-fasciculatus_F_contig10088.93.1|Name=mRNA_E-fasciculatus_F_contig10088.93.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=136bp
QVFVFGPDRKIWELDKGSATAGDALGRSYMQKFYEGALLHDRRNIKSDAK
GQRAKRKTRTAWVNGREVDASYLLKNGDVFDVAQASHQAPEDVSQDASGK
QPSAKDGKPRNPAEERSSSSWRALSAPPTRGLTAD*
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mRNA from alignment at E-fasciculatus_F_contig10088:3790..4759-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10088.93.1 ID=mRNA_E-fasciculatus_F_contig10088.93.1|Name=mRNA_E-fasciculatus_F_contig10088.93.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=970bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10088:3790..4759- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGTGTTCGTATTCGGGCCTGATAGAAAGATCTGGGAGCTGGACAAGGG
TTCGGCGACAGCGGGGGACGCCTTGGGGCGATCGTACATGCAAAAGTTCT
ACGAAGGAGCCTTGCTGCACGACCGAAGAAATATTAAGTCAGACGCCAAG
GGACAACGCGCAAAAAGGAAGACACGTACTGCGTGGGTTAATGGCCGAGA
GGTGTGTGCCGTGCCTGCCGGCCTTACGTAGTCCTGGCGGTTTCAGAAAT
AAGTGCTCGGGAGTTCATAAGAAAGCACTTGGACTACATATGGTGCCCCG
TTCTGTTGGGTATGAAAATGACACGTTCACACCGGACACGACACGATTGT
CTTGGGGCTCGTGGATGCATCCGTGCAGCACTTTGGCGCTGCCACCATCA
CACACACATCGGGGGATGTGGCGGTGAAGGTATTGTAGGCAAGTCACGTA
AGCCGCTCACGAACTCTACGTCAAATACGACCATGACGATGTTGTTGATG
GCTGTCTTTGGAGATTGGGGGGCTATTTTCTCAGGGGAAGGGACCCGCGT
TCTCAAATCTATTTGTCTGTGGTCGCAGGATGACATTTGACGTGTCGTAG
GGTTCAACACAGGCCGATTCCTACAATATCCCTCCCGCGCCAGTACCGCC
TCCTCCGCGATTGCTTCGAGGATGTGGTATTTTATTTTGACGATTTGTAT
ACGGTCAGTTTGTTCACCATGGATGTTGCATCGTTTTTTGGCGACCCCTC
CCGGCGGCGCCAGGTGGACGCCAGCTATCTGCTCAAGAACGGGGATGTGT
TCGATGTGGCACAAGCCTCGCATCAAGCACCCGAAGACGTATCGCAAGAC
GCATCAGGGAAGCAACCTTCGGCAAAGGATGGAAAACCAAGAAATCCGGC
AGAAGAGCGCAGCAGCAGTAGCTGGAGAGCGCTCTCAGCGCCTCCCACTA
GAGGTCTGACGGCTGACTGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10088:3790..4759-

>mRNA_E-fasciculatus_F_contig10088.93.1 ID=mRNA_E-fasciculatus_F_contig10088.93.1|Name=mRNA_E-fasciculatus_F_contig10088.93.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=816bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10088:3790..4759- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
CAGGTGTTCGTATTCGGGCCTGATAGAAAGATCTGGGAGCTGGACAAGGG
TTCGGCGACAGCGGGGGACGCCTTGGGGCGATCGTACATGCAAAAGTTCT
ACGAAGGAGCCTTGCTGCACGACCGAAGAAATATTAAGTCAGACGCCAAG
GGACAACGCGCAAAAAGGAAGACACGTACTGCGTGGGTTAATGGCCGAGA
GCAGGTGTTCGTATTCGGGCCTGATAGAAAGATCTGGGAGCTGGACAAGG
GTTCGGCGACAGCGGGGGACGCCTTGGGGCGATCGTACATGCAAAAGTTC
TACGAAGGAGCCTTGCTGCACGACCGAAGAAATATTAAGTCAGACGCCAA
GGGACAACGCGCAAAAAGGAAGACACGTACTGCGTGGGTTAATGGCCGAG
AGGTGGACGCCAGCTATCTGCTCAAGAACGGGGATGTGTTCGATGTGGCA
CAAGCCTCGCATCAAGCACCCGAAGACGTATCGCAAGACGCATCAGGGAA
GCAACCTTCGGCAAAGGATGGAAAACCAAGAAATCCGGCAGAAGAGCGCA
GCAGCAGTAGCTGGAGAGCGCTCTCAGCGCCTCCCACTAGAGGTCTGACG
GCTGACTGAGTGGACGCCAGCTATCTGCTCAAGAACGGGGATGTGTTCGA
TGTGGCACAAGCCTCGCATCAAGCACCCGAAGACGTATCGCAAGACGCAT
CAGGGAAGCAACCTTCGGCAAAGGATGGAAAACCAAGAAATCCGGCAGAA
GAGCGCAGCAGCAGTAGCTGGAGAGCGCTCTCAGCGCCTCCCACTAGAGG
TCTGACGGCTGACTGA
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