mRNA_E-fasciculatus_F_contig10085.91.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10085.91.1
Unique NamemRNA_E-fasciculatus_F_contig10085.91.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10085.91.1 vs. uniprot
Match: D7FTB4_ECTSI (Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTB4_ECTSI)

HSP 1 Score: 204 bits (518), Expect = 5.800e-59
Identity = 96/97 (98.97%), Postives = 97/97 (100.00%), Query Frame = 1 
Query:    1 TQYFTNKDPDNLSMSGNYNDNGDGLTEWYQSTPGVECYVGDKALKIDREAKTVISESGREIKYDKAVLATGSYPFVPPTPGVDKKGVFVYRTIDDLE 291
            T+YFTNKDPDNLSMSGNYNDNGDGLTEWYQSTPGVECYVGDKALKIDREAKTVISESGREIKYDKAVLATGSYPFVPPTPGVDKKGVFVYRTIDDLE
Sbjct:   54 TEYFTNKDPDNLSMSGNYNDNGDGLTEWYQSTPGVECYVGDKALKIDREAKTVISESGREIKYDKAVLATGSYPFVPPTPGVDKKGVFVYRTIDDLE 150
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BLAST of mRNA_E-fasciculatus_F_contig10085.91.1 vs. uniprot
Match: A0A6H5L7C3_9PHAE (Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1 (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7C3_9PHAE)

HSP 1 Score: 201 bits (510), Expect = 4.480e-58
Identity = 94/97 (96.91%), Postives = 97/97 (100.00%), Query Frame = 1 
Query:    1 TQYFTNKDPDNLSMSGNYNDNGDGLTEWYQSTPGVECYVGDKALKIDREAKTVISESGREIKYDKAVLATGSYPFVPPTPGVDKKGVFVYRTIDDLE 291
            T+YFTNKDPDNLSMSGNYNDNGDGLT+WYQSTPGVECYVGDKALKIDREAKTVISESGREIKYDKAVLATGSYPFVPPTPGVDKKGVFVYRTI+DLE
Sbjct:   38 TEYFTNKDPDNLSMSGNYNDNGDGLTQWYQSTPGVECYVGDKALKIDREAKTVISESGREIKYDKAVLATGSYPFVPPTPGVDKKGVFVYRTINDLE 134
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BLAST of mRNA_E-fasciculatus_F_contig10085.91.1 vs. uniprot
Match: A0A7R9W2K1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W2K1_9STRA)

HSP 1 Score: 123 bits (309), Expect = 2.260e-32
Identity = 61/97 (62.89%), Postives = 72/97 (74.23%), Query Frame = 1 
Query:    1 TQYFTNKDPDNLSMSGNYNDNGDGLTEWYQSTPGVECYVGDKALKIDREAKTVISESGREIKYDKAVLATGSYPFVPPTPGVDKKGVFVYRTIDDLE 291
            T YF + DP  LSM+  ++D  DG T WY+   GVE YVGDKA+ ID E+KTV+ ESGR I YD AVLATGS+PFVPP PG  + GVFVYRTI+DLE
Sbjct:  115 TSYFESLDPSKLSMTSEFDD--DGRTSWYEEN-GVELYVGDKAVSIDTESKTVVGESGRTIPYDVAVLATGSFPFVPPIPGRHRPGVFVYRTIEDLE 208
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BLAST of mRNA_E-fasciculatus_F_contig10085.91.1 vs. uniprot
Match: A0A835YW55_9STRA (Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW55_9STRA)

HSP 1 Score: 127 bits (318), Expect = 7.040e-32
Identity = 59/97 (60.82%), Postives = 75/97 (77.32%), Query Frame = 1 
Query:    1 TQYFTNKDPDNLSMSGNYNDNGDGLTEWYQSTPGVECYVGDKALKIDREAKTVISESGREIKYDKAVLATGSYPFVPPTPGVDKKGVFVYRTIDDLE 291
            T++F  +D D+LSM+G Y     G T+WY +T  +E  VGDKA  ID+E KTV+S SG+ I YD AV+ATGS+PFVPPTPG++KKGVFVYRTI+DLE
Sbjct:   54 TEFFAKRDLDDLSMAGPYT--AAGTTDWYDTTDNIEVLVGDKATAIDKETKTVMSSSGKAIPYDVAVIATGSFPFVPPTPGINKKGVFVYRTIEDLE 148
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BLAST of mRNA_E-fasciculatus_F_contig10085.91.1 vs. uniprot
Match: A0A7S2F8L4_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2F8L4_9STRA)

HSP 1 Score: 121 bits (304), Expect = 9.350e-31
Identity = 64/101 (63.37%), Postives = 74/101 (73.27%), Query Frame = 1 
Query:    1 TQYFTNKDPDNLSMSGNYNDNGDGLTEWYQSTPG---VECYVGDKALKIDREAKTVISESGREIKYDKAVLATGSYPFVPPTPGVDKK-GVFVYRTIDDLE 291
            T+YF +++P ++SMSG Y DNG  LT WY+       V  +VGDKA KID E K VISE GRE++YD AVLATGSYPFVPP  G DK  GVFVYRTIDDLE
Sbjct:  113 TEYFKDRNPSSISMSGEYLDNG--LTAWYEDAIAAGKVAIHVGDKATKIDTEKKVVISEEGREVEYDVAVLATGSYPFVPPIKGSDKTPGVFVYRTIDDLE 211
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BLAST of mRNA_E-fasciculatus_F_contig10085.91.1 vs. uniprot
Match: A0A7S2AW52_9STRA (Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AW52_9STRA)

HSP 1 Score: 121 bits (304), Expect = 5.480e-30
Identity = 64/101 (63.37%), Postives = 74/101 (73.27%), Query Frame = 1 
Query:    1 TQYFTNKDPDNLSMSGNYNDNGDGLTEWYQSTPG---VECYVGDKALKIDREAKTVISESGREIKYDKAVLATGSYPFVPPTPGVDKK-GVFVYRTIDDLE 291
            T+YF +++P ++SMSG Y DNG  LT WY+       V  +VGDKA KID E K VISE GRE++YD AVLATGSYPFVPP  G DK  GVFVYRTIDDLE
Sbjct:  113 TEYFKDRNPSSISMSGEYLDNG--LTAWYEDAIAAGKVAIHVGDKATKIDTEKKVVISEEGREVEYDVAVLATGSYPFVPPIKGSDKTPGVFVYRTIDDLE 211
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BLAST of mRNA_E-fasciculatus_F_contig10085.91.1 vs. uniprot
Match: A0A7S0Y7S5_9STRA (Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1 n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y7S5_9STRA)

HSP 1 Score: 117 bits (292), Expect = 2.280e-28
Identity = 56/97 (57.73%), Postives = 69/97 (71.13%), Query Frame = 1 
Query:    1 TQYFTNKDPDNLSMSGNYNDNGDGLTEWYQSTPGVECYVGDKALKIDREAKTVISESGREIKYDKAVLATGSYPFVPPTPGVDKKGVFVYRTIDDLE 291
            T YF  +DP  LSM+  + D  DG T WY+    VE Y+GDKA+ ID +AKTV  +SG+ I+YD  VLATGS+PFVPP PG  + GVFVYRTI+DLE
Sbjct:   40 TSYFETRDPSELSMTSEFED--DGTTSWYKEN-NVELYIGDKAVAIDVDAKTVTGQSGKTIEYDACVLATGSFPFVPPIPGKQRPGVFVYRTIEDLE 133
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BLAST of mRNA_E-fasciculatus_F_contig10085.91.1 vs. uniprot
Match: A0A6N9CBF1_9BACT (Nitrite reductase small subunit NirD n=1 Tax=Candidatus Poribacteria bacterium TaxID=2026781 RepID=A0A6N9CBF1_9BACT)

HSP 1 Score: 115 bits (288), Expect = 7.880e-28
Identity = 54/97 (55.67%), Postives = 70/97 (72.16%), Query Frame = 1 
Query:    1 TQYFTNKDPDNLSMSGNYNDNGDGLTEWYQSTPGVECYVGDKALKIDREAKTVISESGREIKYDKAVLATGSYPFVPPTPGVDKKGVFVYRTIDDLE 291
            TQ+FTN+DP+ L ++          T+WY+   G+  ++GDKA  IDR+ + V SE+G+EI YD  VLATGSYPFVPP PGVDK GVFVYRTI+DL+
Sbjct:   60 TQFFTNRDPEQLMLTN---------TQWYEEQ-GISLHIGDKATAIDRDLRVVRSENGKEIPYDTVVLATGSYPFVPPIPGVDKDGVFVYRTIEDLQ 146
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BLAST of mRNA_E-fasciculatus_F_contig10085.91.1 vs. uniprot
Match: A0A448YYW5_9STRA (Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1 n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YYW5_9STRA)

HSP 1 Score: 115 bits (288), Expect = 7.900e-28
Identity = 55/97 (56.70%), Postives = 71/97 (73.20%), Query Frame = 1 
Query:    1 TQYFTNKDPDNLSMSGNYNDNGDGLTEWYQSTPGVECYVGDKALKIDREAKTVISESGREIKYDKAVLATGSYPFVPPTPGVDKKGVFVYRTIDDLE 291
            T YF  +DP  LSM+ ++++NG   T WY+    VE Y+GDKA+ ID +AKTV  +SG+ I+YD  VLATGS+PFVPP PG  + GVFVYRTI+DLE
Sbjct:   91 TSYFETRDPSALSMTSDFDENG--ATSWYEEND-VELYIGDKAVAIDVDAKTVTGQSGKTIEYDACVLATGSFPFVPPIPGKQRPGVFVYRTIEDLE 184
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BLAST of mRNA_E-fasciculatus_F_contig10085.91.1 vs. uniprot
Match: A0A1E7EL49_9STRA (Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1 n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7EL49_9STRA)

HSP 1 Score: 112 bits (280), Expect = 9.480e-27
Identity = 52/97 (53.61%), Postives = 70/97 (72.16%), Query Frame = 1 
Query:    1 TQYFTNKDPDNLSMSGNYNDNGDGLTEWYQSTPGVECYVGDKALKIDREAKTVISESGREIKYDKAVLATGSYPFVPPTPGVDKKGVFVYRTIDDLE 291
            T YF  +DP  L+M+ ++ +  DG T WYQ    VE ++GDKA++ID + K +  ESG++I+YD  VLATGS+PFVPP PG  + GVFVYRTI+DLE
Sbjct:   38 TSYFETRDPSALTMTSDFEN--DGTTSWYQEN-NVELFIGDKAIEIDTQNKIITGESGKKIEYDACVLATGSFPFVPPIPGKQRPGVFVYRTIEDLE 131
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10085.91.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTB4_ECTSI5.800e-5998.97Pyridine nucleotide-disulfide oxidoreductase domai... [more]
A0A6H5L7C3_9PHAE4.480e-5896.91Pyridine nucleotide-disulfide oxidoreductase domai... [more]
A0A7R9W2K1_9STRA2.260e-3262.89Hypothetical protein (Fragment) n=1 Tax=Pseudictyo... [more]
A0A835YW55_9STRA7.040e-3260.82Pyridine nucleotide-disulfide oxidoreductase domai... [more]
A0A7S2F8L4_9STRA9.350e-3163.37Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S2AW52_9STRA5.480e-3063.37Pyridine nucleotide-disulfide oxidoreductase domai... [more]
A0A7S0Y7S5_9STRA2.280e-2857.73Pyridine nucleotide-disulfide oxidoreductase domai... [more]
A0A6N9CBF1_9BACT7.880e-2855.67Nitrite reductase small subunit NirD n=1 Tax=Candi... [more]
A0A448YYW5_9STRA7.900e-2856.70Pyridine nucleotide-disulfide oxidoreductase domai... [more]
A0A1E7EL49_9STRA9.480e-2753.61Pyridine nucleotide-disulfide oxidoreductase domai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10085contigE-fasciculatus_F_contig10085:248..1018 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score203.8
Seed ortholog evalue3.9e-50
Seed eggNOG ortholog2880.D7FTB4
KEGG rclassRC00176
KEGG koko:K17877
KEGG ReactionR00787,R00789
KEGG Pathwayko00910,ko01120,map00910,map01120
KEGG ModuleM00531
GOsGO:0006807,GO:0008150,GO:0008152
EggNOG free text desc.monodehydroascorbate reductase (NADH) activity
EggNOG OGsCOG0446@1,KOG1336@2759
EC1.7.1.4
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionBFD-like [2Fe-2S]-binding domain
Ec32 orthologEc-05_000240.1
Exons2
Model size300
Cds size300
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927510.1895516-CDS-E-fasciculatus_F_contig10085:247..3701622927510.1895516-CDS-E-fasciculatus_F_contig10085:247..370Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10085 248..370 -
1695995570.8994493-CDS-E-fasciculatus_F_contig10085:247..3701695995570.8994493-CDS-E-fasciculatus_F_contig10085:247..370Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10085 248..370 -
1622927510.2008975-CDS-E-fasciculatus_F_contig10085:841..10181622927510.2008975-CDS-E-fasciculatus_F_contig10085:841..1018Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10085 842..1018 -
1695995570.9144113-CDS-E-fasciculatus_F_contig10085:841..10181695995570.9144113-CDS-E-fasciculatus_F_contig10085:841..1018Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10085 842..1018 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10085.91.1prot_E-fasciculatus_F_contig10085.91.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10085 248..1018 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10085.91.1

>prot_E-fasciculatus_F_contig10085.91.1 ID=prot_E-fasciculatus_F_contig10085.91.1|Name=mRNA_E-fasciculatus_F_contig10085.91.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=100bp
TQYFTNKDPDNLSMSGNYNDNGDGLTEWYQSTPGVECYVGDKALKIDREA
KTVISESGREIKYDKAVLATGSYPFVPPTPGVDKKGVFVYRTIDDLEVT*
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mRNA from alignment at E-fasciculatus_F_contig10085:248..1018-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10085.91.1 ID=mRNA_E-fasciculatus_F_contig10085.91.1|Name=mRNA_E-fasciculatus_F_contig10085.91.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=771bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10085:248..1018- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACACAGTACTTCACAAACAAAGACCCAGACAACCTGTCCATGTCGGGCAA
CTACAACGACAACGGCGACGGGCTGACCGAGTGGTACCAGTCTACCCCCG
GCGTGGAATGCTACGTTGGGGATAAGGCTCTCAAGATCGACCGCGAGGCA
AAGACGGTCATCTCGGAGTCCGGCAGGGTAGGTTGTTTTCTTTCGTGGGA
TTGTTGTTAGCTTGTTTTTTTATGTGAAGGTCGTGATTTCCCAGTCCAGT
ACGCCTTTGGTGACCACAGCAGCTGGTAAAGCGGACAGCGTCAAGGTATC
CACCCCCCTTTCTCTGCTTTCAGTAGCAGGCCAAACAGGTTCCCTCTCTG
CCACTGTTGCTCAGTCGGTGTTTCCACCGCCGTTGTTGTGCTGCTGTTGT
TGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGGTATATCTTGTCGTTACT
TTCCCCGGAGAAATCCAGCCCTCCTTGTAGCGAGACCTCTTGACGGAGAT
ACTGTATTGTAAGCATGACGTGGCAGCGTCTGTCCGTACTTTACGAAATA
TCCAACAGTCTATTGCTGACGCCAGATCGCCCGACTTGCGTTCGTTCTCC
TGTGACACCACGCCGGCGCCGTGCTCGACGACACAACTGCTTTCGCAGGA
GATTAAGTACGACAAGGCCGTGCTGGCCACTGGGTCGTACCCCTTCGTGC
CCCCCACCCCGGGAGTGGATAAGAAGGGCGTCTTCGTGTACAGGACCATC
GACGACTTGGAGGTGACATGA
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10085:248..1018-

>mRNA_E-fasciculatus_F_contig10085.91.1 ID=mRNA_E-fasciculatus_F_contig10085.91.1|Name=mRNA_E-fasciculatus_F_contig10085.91.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=600bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10085:248..1018- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ACACAGTACTTCACAAACAAAGACCCAGACAACCTGTCCATGTCGGGCAA
CTACAACGACAACGGCGACGGGCTGACCGAGTGGTACCAGTCTACCCCCG
GCGTGGAATGCTACGTTGGGGATAAGGCTCTCAAGATCGACCGCGAGGCA
AAGACGGTCATCTCGGAGTCCGGCAGGACACAGTACTTCACAAACAAAGA
CCCAGACAACCTGTCCATGTCGGGCAACTACAACGACAACGGCGACGGGC
TGACCGAGTGGTACCAGTCTACCCCCGGCGTGGAATGCTACGTTGGGGAT
AAGGCTCTCAAGATCGACCGCGAGGCAAAGACGGTCATCTCGGAGTCCGG
CAGGGAGATTAAGTACGACAAGGCCGTGCTGGCCACTGGGTCGTACCCCT
TCGTGCCCCCCACCCCGGGAGTGGATAAGAAGGGCGTCTTCGTGTACAGG
ACCATCGACGACTTGGAGGTGACATGAGAGATTAAGTACGACAAGGCCGT
GCTGGCCACTGGGTCGTACCCCTTCGTGCCCCCCACCCCGGGAGTGGATA
AGAAGGGCGTCTTCGTGTACAGGACCATCGACGACTTGGAGGTGACATGA
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