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Homology
BLAST of mRNA_E-fasciculatus_F_contig10081.90.1 vs. uniprot
Match: A0A6H5K1B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1B4_9PHAE) HSP 1 Score: 170 bits (430), Expect = 1.740e-44 Identity = 130/226 (57.52%), Postives = 134/226 (59.29%), Query Frame = 1 Query: 1 DAEPGAGGGWLDFRAVYARHGVTKLVEQYRADSLRSAGAGAEQPPSPSAXXXXXXXXXXXXXXXTTAVVKRDGPAA-TGIANGASTPGETAAPAAXXXXXXXXXXXXXXXXXXXXXTKSXXLSSSLIATGGSSXXXXXXXXXXXXXXXXXECNAVLAKLAAVASRLHPESFPPATPP-PSSCSSLALVVSTPPPLSGDGGVASVPSAEV-VWKGKGKLAAGPHAAA 669
DAE GAGG WLDFRAVYARHGVTKLVEQYRAD LR GAGA Q P A TTAVVKRD PAA +GIANGAST A AA + S SSSLIATG S ECNAVLAKLA VASRLHPESFPP T PSS SS A+VVS P PLSGDGG + VPSAE VWKGKGKLA GP AAA
Sbjct: 50 DAEQGAGGVWLDFRAVYARHGVTKLVEQYRADKLRGVGAGAGQLP---AVAGDSAAGAAVASESTTAVVKRDRPAAASGIANGASTV-VAVAEAAGGAGLSSGVNSGANVNRTTSSSLSLLSSSSLIATGCSGAAAENGDSRG-------ECNAVLAKLAEVASRLHPESFPPRTTTLPSSSSSRAMVVSAP-PLSGDGGASLVPSAEERVWKGKGKLA-GPGAAA 262
BLAST of mRNA_E-fasciculatus_F_contig10081.90.1 vs. uniprot
Match: D7FHF4_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHF4_ECTSI) HSP 1 Score: 139 bits (350), Expect = 9.720e-34 Identity = 135/225 (60.00%), Postives = 140/225 (62.22%), Query Frame = 1 Query: 1 DAEPGAGGGWLDFRAVYARHGVTKLVEQYRADSLRSAGAGAEQPPSPSAXXXXXXXXXXXXXXXTTAVVKRDGPAA-TGIANGASTPGETAAPAAXXXXXXXXXXXXXXXXXXXXXTKSXXLSSSLIATGGSSXXXXXXXXXXXXXXXXXECNAVLAKLAAVASRLHPESFPPATPPPSSCSSLALVVSTPPPLSGDGGVASVPSAEV-VWKGKGKLAAGPHAAA 669
DAE GAGG WLDFRAVYARHGVTKL EQYRAD+LR GA A QPPS + XXXXXXXXXX AVVKRDG AA TGIANGAST XXXXX + SSSLIATG S XXXXXXXXX ECNAVL KLA VASRLHPESFPP T V + PP SGDGG V SAE +WKGKGKLA GP AA
Sbjct: 518 DAEEGAGGVWLDFRAVYARHGVTKLAEQYRADNLRRWGASAGQPPSVAGDSGAXXXXXXXXXXI--AVVKRDGSAAATGIANGASTXXXXXXXXXGLSSGVNPGAXXXXXTSLSLLSSP---SSSLIATG-CSGAXXXXXXXXXNGGSGGECNAVLDKLAEVASRLHPESFPPRTTXXXXXXXXXXXVVSAPPRSGDGGAPLVHSAEEGLWKGKGKLA-GPDPAA 735
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Exons | 2 |
Model size | 776 |
Cds size | 774 |
Stop | 0 |
Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E-fasciculatus_F_contig10081.90.1 >prot_E-fasciculatus_F_contig10081.90.1 ID=prot_E-fasciculatus_F_contig10081.90.1|Name=mRNA_E-fasciculatus_F_contig10081.90.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=258bp
DAEPGAGGGWLDFRAVYARHGVTKLVEQYRADSLRSAGAGAEQPPSPSAA GDGTNAAAAAASETTTAVVKRDGPAATGIANGASTPGETAAPAAGAGAGV PSSGVNAGANVNGNGTKSSSLSSSLIATGGSSGAAAAAAATAASGGSGGE CNAVLAKLAAVASRLHPESFPPATPPPSSCSSLALVVSTPPPLSGDGGVA SVPSAEVVWKGKGKLAAGPHAAAAAAAVARSPGSGGSGEEEGSDSGRGGR GSAIEEVR back to topmRNA from alignment at E-fasciculatus_F_contig10081:3251..4775- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E-fasciculatus_F_contig10081.90.1 ID=mRNA_E-fasciculatus_F_contig10081.90.1|Name=mRNA_E-fasciculatus_F_contig10081.90.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1525bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10081:3251..4775- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) GACGCGGAGCCAGGCGCGGGTGGGGGGTGGTTGGACTTCCGGGCTGTGTA
TGCGAGGCACGGCGTGACGAAGCTGGTGAGGGTGGAAACATATATTGTTG
TTGTTGTCGTCTTCGTCGTCGTCGTTGTTAATTGGTGGTGAACTGTTGCT
ACTGCTGCTGTTGTTGTTGTTGTTGGTGTTGGTGTTGGTGGTGGTGGTGG
TGGTGGTGGTGGTGGTGAGGGTTCGGAGAGCGGTGGTCCGTTTCAAGAGC
CGCTCCTTGGGCTTACATCATAGGCATGGTAACAGCAATAGTGTACAATC
TTAAAGAAACGAACGGTCACATGCGTCCGGTCAGCAGAGGAAGCACGCCG
TGTGGAATTACGGAGAAGCTGTCAACCGGAAAGCTGCATCTCGGACGTTC
ACCGCTATTCGTGCGGGTCGTTTTTCGTTGACGAAGCTCCTGTTGACTAA
TTTCGGGCGTGTGGAGGGAATCCGACCTGTGGCCACCGCCGGGGTCTAGC
TTGTTGTCTGCGTGCCGACTCTTGGACGACGCCCCCGCCACCCTCATTTG
CTTGGAATACCGTAGGTTTGCATAAGATATCACACCCCCGGGGCCGATAT
TCAAAGCTCGAATTCTCGGCAGGAGAAATAGTGACGGACGGTGCCGAAAA
GTGCAGCGTTGGAACCGTTTTTTTTTTTCTTTCTCTCCCGTTATTGGACT
CTTGTCGTCTGCCCCCCTGGCCCACATCCGGGGTCACATGGGAAGGGGGG
GCTGGACCCCCTCCTGCGGCTCCCTATAACACGCTTGTTCTGTCGTGCCA
CCTCTTCCATGTATTTCCCGGTCAGGTCGAGCAGTACCGCGCGGACAGCT
TGAGGAGTGCGGGTGCCGGTGCGGAGCAACCCCCTTCCCCTTCCGCTGCA
GGCGACGGCACGAACGCCGCCGCCGCCGCCGCTTCAGAGACCACGACTGC
GGTCGTGAAGCGGGACGGGCCGGCGGCTACCGGCATCGCGAACGGTGCAT
CAACACCAGGAGAAACAGCAGCACCAGCAGCAGGAGCAGGAGCAGGAGTG
CCGTCGTCAGGAGTGAACGCAGGGGCCAACGTCAACGGCAATGGTACCAA
GTCGTCGTCGTTGTCGTCATCGCTCATCGCGACGGGCGGTAGCAGCGGCG
CTGCTGCGGCCGCGGCCGCCACGGCGGCGAGCGGGGGGAGCGGGGGCGAG
TGCAACGCCGTGCTGGCCAAGCTCGCCGCTGTTGCTTCCCGCCTGCACCC
GGAGTCCTTCCCCCCCGCAACTCCTCCACCCTCCTCTTGCTCCTCGTTGG
CGCTGGTGGTTTCGACGCCTCCTCCCCTTAGCGGCGACGGTGGTGTGGCG
TCGGTGCCTTCGGCCGAGGTGGTATGGAAGGGCAAGGGCAAGCTGGCGGC
GGGGCCTCACGCCGCCGCTGCCGCCGCCGCCGTCGCACGTTCTCCTGGTT
CCGGCGGGAGCGGGGAGGAGGAGGGTAGTGATAGCGGCCGCGGGGGTCGT
GGTAGCGCGATAGAGGAGGTGCGGC back to topCoding sequence (CDS) from alignment at E-fasciculatus_F_contig10081:3251..4775- >mRNA_E-fasciculatus_F_contig10081.90.1 ID=mRNA_E-fasciculatus_F_contig10081.90.1|Name=mRNA_E-fasciculatus_F_contig10081.90.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1548bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10081:3251..4775- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female) GACGCGGAGCCAGGCGCGGGTGGGGGGTGGTTGGACTTCCGGGCTGTGTA TGCGAGGCACGGCGTGACGAAGCTGGACGCGGAGCCAGGCGCGGGTGGGG GGTGGTTGGACTTCCGGGCTGTGTATGCGAGGCACGGCGTGACGAAGCTG GTCGAGCAGTACCGCGCGGACAGCTTGAGGAGTGCGGGTGCCGGTGCGGA GCAACCCCCTTCCCCTTCCGCTGCAGGCGACGGCACGAACGCCGCCGCCG CCGCCGCTTCAGAGACCACGACTGCGGTCGTGAAGCGGGACGGGCCGGCG GCTACCGGCATCGCGAACGGTGCATCAACACCAGGAGAAACAGCAGCACC AGCAGCAGGAGCAGGAGCAGGAGTGCCGTCGTCAGGAGTGAACGCAGGGG CCAACGTCAACGGCAATGGTACCAAGTCGTCGTCGTTGTCGTCATCGCTC ATCGCGACGGGCGGTAGCAGCGGCGCTGCTGCGGCCGCGGCCGCCACGGC GGCGAGCGGGGGGAGCGGGGGCGAGTGCAACGCCGTGCTGGCCAAGCTCG CCGCTGTTGCTTCCCGCCTGCACCCGGAGTCCTTCCCCCCCGCAACTCCT CCACCCTCCTCTTGCTCCTCGTTGGCGCTGGTGGTTTCGACGCCTCCTCC CCTTAGCGGCGACGGTGGTGTGGCGTCGGTGCCTTCGGCCGAGGTGGTAT GGAAGGGCAAGGGCAAGCTGGCGGCGGGGCCTCACGCCGCCGCTGCCGCC GCCGCCGTCGCACGTTCTCCTGGTTCCGGCGGGAGCGGGGAGGAGGAGGG TAGTGATAGCGGCCGCGGGGGTCGTGGTAGCGCGATAGAGGAGGTGCGGG TCGAGCAGTACCGCGCGGACAGCTTGAGGAGTGCGGGTGCCGGTGCGGAG CAACCCCCTTCCCCTTCCGCTGCAGGCGACGGCACGAACGCCGCCGCCGC CGCCGCTTCAGAGACCACGACTGCGGTCGTGAAGCGGGACGGGCCGGCGG CTACCGGCATCGCGAACGGTGCATCAACACCAGGAGAAACAGCAGCACCA GCAGCAGGAGCAGGAGCAGGAGTGCCGTCGTCAGGAGTGAACGCAGGGGC CAACGTCAACGGCAATGGTACCAAGTCGTCGTCGTTGTCGTCATCGCTCA TCGCGACGGGCGGTAGCAGCGGCGCTGCTGCGGCCGCGGCCGCCACGGCG GCGAGCGGGGGGAGCGGGGGCGAGTGCAACGCCGTGCTGGCCAAGCTCGC CGCTGTTGCTTCCCGCCTGCACCCGGAGTCCTTCCCCCCCGCAACTCCTC CACCCTCCTCTTGCTCCTCGTTGGCGCTGGTGGTTTCGACGCCTCCTCCC CTTAGCGGCGACGGTGGTGTGGCGTCGGTGCCTTCGGCCGAGGTGGTATG GAAGGGCAAGGGCAAGCTGGCGGCGGGGCCTCACGCCGCCGCTGCCGCCG CCGCCGTCGCACGTTCTCCTGGTTCCGGCGGGAGCGGGGAGGAGGAGGGT AGTGATAGCGGCCGCGGGGGTCGTGGTAGCGCGATAGAGGAGGTGCGG back to top
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