mRNA_E-fasciculatus_F_contig10081.90.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10081.90.1
Unique NamemRNA_E-fasciculatus_F_contig10081.90.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
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BLAST of mRNA_E-fasciculatus_F_contig10081.90.1 vs. uniprot
Match: A0A6H5K1B4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1B4_9PHAE)

HSP 1 Score: 170 bits (430), Expect = 1.740e-44
Identity = 130/226 (57.52%), Postives = 134/226 (59.29%), Query Frame = 1 
Query:    1 DAEPGAGGGWLDFRAVYARHGVTKLVEQYRADSLRSAGAGAEQPPSPSAXXXXXXXXXXXXXXXTTAVVKRDGPAA-TGIANGASTPGETAAPAAXXXXXXXXXXXXXXXXXXXXXTKSXXLSSSLIATGGSSXXXXXXXXXXXXXXXXXECNAVLAKLAAVASRLHPESFPPATPP-PSSCSSLALVVSTPPPLSGDGGVASVPSAEV-VWKGKGKLAAGPHAAA 669
            DAE GAGG WLDFRAVYARHGVTKLVEQYRAD LR  GAGA Q P   A               TTAVVKRD PAA +GIANGAST     A AA                     + S   SSSLIATG S                  ECNAVLAKLA VASRLHPESFPP T   PSS SS A+VVS P PLSGDGG + VPSAE  VWKGKGKLA GP AAA
Sbjct:   50 DAEQGAGGVWLDFRAVYARHGVTKLVEQYRADKLRGVGAGAGQLP---AVAGDSAAGAAVASESTTAVVKRDRPAAASGIANGASTV-VAVAEAAGGAGLSSGVNSGANVNRTTSSSLSLLSSSSLIATGCSGAAAENGDSRG-------ECNAVLAKLAEVASRLHPESFPPRTTTLPSSSSSRAMVVSAP-PLSGDGGASLVPSAEERVWKGKGKLA-GPGAAA 262
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BLAST of mRNA_E-fasciculatus_F_contig10081.90.1 vs. uniprot
Match: D7FHF4_ECTSI (Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHF4_ECTSI)

HSP 1 Score: 139 bits (350), Expect = 9.720e-34
Identity = 135/225 (60.00%), Postives = 140/225 (62.22%), Query Frame = 1 
Query:    1 DAEPGAGGGWLDFRAVYARHGVTKLVEQYRADSLRSAGAGAEQPPSPSAXXXXXXXXXXXXXXXTTAVVKRDGPAA-TGIANGASTPGETAAPAAXXXXXXXXXXXXXXXXXXXXXTKSXXLSSSLIATGGSSXXXXXXXXXXXXXXXXXECNAVLAKLAAVASRLHPESFPPATPPPSSCSSLALVVSTPPPLSGDGGVASVPSAEV-VWKGKGKLAAGPHAAA 669
            DAE GAGG WLDFRAVYARHGVTKL EQYRAD+LR  GA A QPPS +     XXXXXXXXXX   AVVKRDG AA TGIANGAST                   XXXXX      +     SSSLIATG  S  XXXXXXXXX      ECNAVL KLA VASRLHPESFPP T            V + PP SGDGG   V SAE  +WKGKGKLA GP  AA
Sbjct:  518 DAEEGAGGVWLDFRAVYARHGVTKLAEQYRADNLRRWGASAGQPPSVAGDSGAXXXXXXXXXXI--AVVKRDGSAAATGIANGASTXXXXXXXXXGLSSGVNPGAXXXXXTSLSLLSSP---SSSLIATG-CSGAXXXXXXXXXNGGSGGECNAVLDKLAEVASRLHPESFPPRTTXXXXXXXXXXXVVSAPPRSGDGGAPLVHSAEEGLWKGKGKLA-GPDPAA 735
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10081.90.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K1B4_9PHAE1.740e-4457.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FHF4_ECTSI9.720e-3460.00Ankyrin n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10081contigE-fasciculatus_F_contig10081:3251..4775 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size776
Cds size774
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927510.1413054-CDS-E-fasciculatus_F_contig10081:3251..39501622927510.1413054-CDS-E-fasciculatus_F_contig10081:3251..3950Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10081 3252..3950 -
1695995570.8823256-CDS-E-fasciculatus_F_contig10081:3251..39501695995570.8823256-CDS-E-fasciculatus_F_contig10081:3251..3950Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10081 3252..3950 -
1622927510.1548202-CDS-E-fasciculatus_F_contig10081:4700..47751622927510.1548202-CDS-E-fasciculatus_F_contig10081:4700..4775Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10081 4701..4775 -
1695995570.890454-CDS-E-fasciculatus_F_contig10081:4700..47751695995570.890454-CDS-E-fasciculatus_F_contig10081:4700..4775Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10081 4701..4775 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10081.90.1prot_E-fasciculatus_F_contig10081.90.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10081 3252..4775 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10081.90.1

>prot_E-fasciculatus_F_contig10081.90.1 ID=prot_E-fasciculatus_F_contig10081.90.1|Name=mRNA_E-fasciculatus_F_contig10081.90.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=258bp
DAEPGAGGGWLDFRAVYARHGVTKLVEQYRADSLRSAGAGAEQPPSPSAA
GDGTNAAAAAASETTTAVVKRDGPAATGIANGASTPGETAAPAAGAGAGV
PSSGVNAGANVNGNGTKSSSLSSSLIATGGSSGAAAAAAATAASGGSGGE
CNAVLAKLAAVASRLHPESFPPATPPPSSCSSLALVVSTPPPLSGDGGVA
SVPSAEVVWKGKGKLAAGPHAAAAAAAVARSPGSGGSGEEEGSDSGRGGR
GSAIEEVR
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mRNA from alignment at E-fasciculatus_F_contig10081:3251..4775-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10081.90.1 ID=mRNA_E-fasciculatus_F_contig10081.90.1|Name=mRNA_E-fasciculatus_F_contig10081.90.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=1525bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10081:3251..4775- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACGCGGAGCCAGGCGCGGGTGGGGGGTGGTTGGACTTCCGGGCTGTGTA
TGCGAGGCACGGCGTGACGAAGCTGGTGAGGGTGGAAACATATATTGTTG
TTGTTGTCGTCTTCGTCGTCGTCGTTGTTAATTGGTGGTGAACTGTTGCT
ACTGCTGCTGTTGTTGTTGTTGTTGGTGTTGGTGTTGGTGGTGGTGGTGG
TGGTGGTGGTGGTGGTGAGGGTTCGGAGAGCGGTGGTCCGTTTCAAGAGC
CGCTCCTTGGGCTTACATCATAGGCATGGTAACAGCAATAGTGTACAATC
TTAAAGAAACGAACGGTCACATGCGTCCGGTCAGCAGAGGAAGCACGCCG
TGTGGAATTACGGAGAAGCTGTCAACCGGAAAGCTGCATCTCGGACGTTC
ACCGCTATTCGTGCGGGTCGTTTTTCGTTGACGAAGCTCCTGTTGACTAA
TTTCGGGCGTGTGGAGGGAATCCGACCTGTGGCCACCGCCGGGGTCTAGC
TTGTTGTCTGCGTGCCGACTCTTGGACGACGCCCCCGCCACCCTCATTTG
CTTGGAATACCGTAGGTTTGCATAAGATATCACACCCCCGGGGCCGATAT
TCAAAGCTCGAATTCTCGGCAGGAGAAATAGTGACGGACGGTGCCGAAAA
GTGCAGCGTTGGAACCGTTTTTTTTTTTCTTTCTCTCCCGTTATTGGACT
CTTGTCGTCTGCCCCCCTGGCCCACATCCGGGGTCACATGGGAAGGGGGG
GCTGGACCCCCTCCTGCGGCTCCCTATAACACGCTTGTTCTGTCGTGCCA
CCTCTTCCATGTATTTCCCGGTCAGGTCGAGCAGTACCGCGCGGACAGCT
TGAGGAGTGCGGGTGCCGGTGCGGAGCAACCCCCTTCCCCTTCCGCTGCA
GGCGACGGCACGAACGCCGCCGCCGCCGCCGCTTCAGAGACCACGACTGC
GGTCGTGAAGCGGGACGGGCCGGCGGCTACCGGCATCGCGAACGGTGCAT
CAACACCAGGAGAAACAGCAGCACCAGCAGCAGGAGCAGGAGCAGGAGTG
CCGTCGTCAGGAGTGAACGCAGGGGCCAACGTCAACGGCAATGGTACCAA
GTCGTCGTCGTTGTCGTCATCGCTCATCGCGACGGGCGGTAGCAGCGGCG
CTGCTGCGGCCGCGGCCGCCACGGCGGCGAGCGGGGGGAGCGGGGGCGAG
TGCAACGCCGTGCTGGCCAAGCTCGCCGCTGTTGCTTCCCGCCTGCACCC
GGAGTCCTTCCCCCCCGCAACTCCTCCACCCTCCTCTTGCTCCTCGTTGG
CGCTGGTGGTTTCGACGCCTCCTCCCCTTAGCGGCGACGGTGGTGTGGCG
TCGGTGCCTTCGGCCGAGGTGGTATGGAAGGGCAAGGGCAAGCTGGCGGC
GGGGCCTCACGCCGCCGCTGCCGCCGCCGCCGTCGCACGTTCTCCTGGTT
CCGGCGGGAGCGGGGAGGAGGAGGGTAGTGATAGCGGCCGCGGGGGTCGT
GGTAGCGCGATAGAGGAGGTGCGGC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10081:3251..4775-

>mRNA_E-fasciculatus_F_contig10081.90.1 ID=mRNA_E-fasciculatus_F_contig10081.90.1|Name=mRNA_E-fasciculatus_F_contig10081.90.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=1548bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10081:3251..4775- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GACGCGGAGCCAGGCGCGGGTGGGGGGTGGTTGGACTTCCGGGCTGTGTA
TGCGAGGCACGGCGTGACGAAGCTGGACGCGGAGCCAGGCGCGGGTGGGG
GGTGGTTGGACTTCCGGGCTGTGTATGCGAGGCACGGCGTGACGAAGCTG
GTCGAGCAGTACCGCGCGGACAGCTTGAGGAGTGCGGGTGCCGGTGCGGA
GCAACCCCCTTCCCCTTCCGCTGCAGGCGACGGCACGAACGCCGCCGCCG
CCGCCGCTTCAGAGACCACGACTGCGGTCGTGAAGCGGGACGGGCCGGCG
GCTACCGGCATCGCGAACGGTGCATCAACACCAGGAGAAACAGCAGCACC
AGCAGCAGGAGCAGGAGCAGGAGTGCCGTCGTCAGGAGTGAACGCAGGGG
CCAACGTCAACGGCAATGGTACCAAGTCGTCGTCGTTGTCGTCATCGCTC
ATCGCGACGGGCGGTAGCAGCGGCGCTGCTGCGGCCGCGGCCGCCACGGC
GGCGAGCGGGGGGAGCGGGGGCGAGTGCAACGCCGTGCTGGCCAAGCTCG
CCGCTGTTGCTTCCCGCCTGCACCCGGAGTCCTTCCCCCCCGCAACTCCT
CCACCCTCCTCTTGCTCCTCGTTGGCGCTGGTGGTTTCGACGCCTCCTCC
CCTTAGCGGCGACGGTGGTGTGGCGTCGGTGCCTTCGGCCGAGGTGGTAT
GGAAGGGCAAGGGCAAGCTGGCGGCGGGGCCTCACGCCGCCGCTGCCGCC
GCCGCCGTCGCACGTTCTCCTGGTTCCGGCGGGAGCGGGGAGGAGGAGGG
TAGTGATAGCGGCCGCGGGGGTCGTGGTAGCGCGATAGAGGAGGTGCGGG
TCGAGCAGTACCGCGCGGACAGCTTGAGGAGTGCGGGTGCCGGTGCGGAG
CAACCCCCTTCCCCTTCCGCTGCAGGCGACGGCACGAACGCCGCCGCCGC
CGCCGCTTCAGAGACCACGACTGCGGTCGTGAAGCGGGACGGGCCGGCGG
CTACCGGCATCGCGAACGGTGCATCAACACCAGGAGAAACAGCAGCACCA
GCAGCAGGAGCAGGAGCAGGAGTGCCGTCGTCAGGAGTGAACGCAGGGGC
CAACGTCAACGGCAATGGTACCAAGTCGTCGTCGTTGTCGTCATCGCTCA
TCGCGACGGGCGGTAGCAGCGGCGCTGCTGCGGCCGCGGCCGCCACGGCG
GCGAGCGGGGGGAGCGGGGGCGAGTGCAACGCCGTGCTGGCCAAGCTCGC
CGCTGTTGCTTCCCGCCTGCACCCGGAGTCCTTCCCCCCCGCAACTCCTC
CACCCTCCTCTTGCTCCTCGTTGGCGCTGGTGGTTTCGACGCCTCCTCCC
CTTAGCGGCGACGGTGGTGTGGCGTCGGTGCCTTCGGCCGAGGTGGTATG
GAAGGGCAAGGGCAAGCTGGCGGCGGGGCCTCACGCCGCCGCTGCCGCCG
CCGCCGTCGCACGTTCTCCTGGTTCCGGCGGGAGCGGGGAGGAGGAGGGT
AGTGATAGCGGCCGCGGGGGTCGTGGTAGCGCGATAGAGGAGGTGCGG
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