mRNA_E-fasciculatus_F_contig10073.83.1 (mRNA) Ectocarpus fasciculatus Ec846f_Ec191_B4_f female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E-fasciculatus_F_contig10073.83.1
Unique NamemRNA_E-fasciculatus_F_contig10073.83.1
TypemRNA
OrganismEctocarpus fasciculatus Ec846f_Ec191_B4_f female (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
Homology
BLAST of mRNA_E-fasciculatus_F_contig10073.83.1 vs. uniprot
Match: A0A6H5KPR2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPR2_9PHAE)

HSP 1 Score: 119 bits (299), Expect = 7.010e-32
Identity = 58/65 (89.23%), Postives = 59/65 (90.77%), Query Frame = 1
Query:   13 RYLEMARRSSEVVWKRGLLTKGNGICHGVAGNGYAFLSLRKADAADGRHLHRARSFAGVCLVLLL 207
            RYLEMARRSSEVVWKRGLLTKGNGICHGVAGNGYAFLSLRKADAADGRH HRARSFAG     +L
Sbjct:   13 RYLEMARRSSEVVWKRGLLTKGNGICHGVAGNGYAFLSLRKADAADGRHQHRARSFAGFAASAIL 77          
BLAST of mRNA_E-fasciculatus_F_contig10073.83.1 vs. uniprot
Match: D8LDA7_ECTSI (LanC lantibiotic synthetase component C-like 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDA7_ECTSI)

HSP 1 Score: 119 bits (298), Expect = 1.990e-29
Identity = 57/58 (98.28%), Postives = 57/58 (98.28%), Query Frame = 1
Query:   13 RYLEMARRSSEVVWKRGLLTKGNGICHGVAGNGYAFLSLRKADAADGRHLHRARSFAG 186
            RYLEMARRSSEVVWKRGLLTKGNGICHGVAGNGYAFLSLRKADAADGRH HRARSFAG
Sbjct:  406 RYLEMARRSSEVVWKRGLLTKGNGICHGVAGNGYAFLSLRKADAADGRHQHRARSFAG 463          
BLAST of mRNA_E-fasciculatus_F_contig10073.83.1 vs. uniprot
Match: A0A091TMB8_PHALP (LanC-like 2 (Fragment) n=1 Tax=Phaethon lepturus TaxID=97097 RepID=A0A091TMB8_PHALP)

HSP 1 Score: 89.7 bits (221), Expect = 3.320e-21
Identity = 48/90 (53.33%), Postives = 61/90 (67.78%), Query Frame = 1
Query:   13 RYLEMARRSSEVVWKRGLLTKGNGICHGVAGNGYAFLSLRKADAADGRHLHRARSFAGVCLVLLL--ASVPDRPMSLFEGLAGSAAFLAD 276
            +YL+ A   S+V+W+RGLL KG GICHG AGNGY+FLSL      D ++L+RA  FA  CL        +PDRP SLFEG+AG+  FL+D
Sbjct:    7 KYLKDAMDCSDVIWQRGLLRKGYGICHGTAGNGYSFLSLYNL-TQDKKYLYRACKFAEWCLEYGAHGCRIPDRPYSLFEGMAGAIHFLSD 95          
BLAST of mRNA_E-fasciculatus_F_contig10073.83.1 vs. uniprot
Match: A0A8I6TI19_CIMLE (Uncharacterized protein n=3 Tax=Cimex lectularius TaxID=79782 RepID=A0A8I6TI19_CIMLE)

HSP 1 Score: 94.7 bits (234), Expect = 7.860e-21
Identity = 51/90 (56.67%), Postives = 60/90 (66.67%), Query Frame = 1
Query:   13 RYLEMARRSSEVVWKRGLLTKGNGICHGVAGNGYAFLSLRKADAADGRHLHRARSFAGVCLV--LLLASVPDRPMSLFEGLAGSAAFLAD 276
            +YL  A +  E+VW+RGLL KG GICHGVAGNGY FL+L +A   D R+LHRA  FA          A VPD P SL+EGLAG+  FLAD
Sbjct:  346 KYLTAAMKCGEIVWQRGLLKKGPGICHGVAGNGYVFLALYRA-TNDLRYLHRANQFAKFLKTEEFKKARVPDNPYSLYEGLAGTICFLAD 434          
BLAST of mRNA_E-fasciculatus_F_contig10073.83.1 vs. uniprot
Match: A0A0L7QX72_9HYME (LanC-like protein 2 n=1 Tax=Habropoda laboriosa TaxID=597456 RepID=A0A0L7QX72_9HYME)

HSP 1 Score: 93.2 bits (230), Expect = 1.010e-20
Identity = 47/87 (54.02%), Postives = 57/87 (65.52%), Query Frame = 1
Query:   16 YLEMARRSSEVVWKRGLLTKGNGICHGVAGNGYAFLSLRKADAADGRHLHRARSFAGVCLVLLLASVPDRPMSLFEGLAGSAAFLAD 276
            YL+ A +  EV+W RGLL KGNGICHGVAGN Y FL L + +  D ++LHRA  FA  C+      +PD P SLFEGL G+  FL D
Sbjct:  230 YLKTAVQCGEVIWSRGLLRKGNGICHGVAGNAYTFLCLFQ-ETKDLKYLHRASKFAQWCISSHEQRIPDSPFSLFEGLGGTIYFLVD 315          
BLAST of mRNA_E-fasciculatus_F_contig10073.83.1 vs. uniprot
Match: E9IC62_SOLIN (Uncharacterized protein (Fragment) n=2 Tax=Solenopsis invicta TaxID=13686 RepID=E9IC62_SOLIN)

HSP 1 Score: 90.1 bits (222), Expect = 1.100e-20
Identity = 47/91 (51.65%), Postives = 62/91 (68.13%), Query Frame = 1
Query:   13 RYLEMARRSSEVVWKRGLLTKGNGICHGVAGNGYAFLSLRKADAADGRHLHRARSFAGVCLVLLL---ASVPDRPMSLFEGLAGSAAFLAD 276
            RYL+  +R+S++VW++GLL KG GICHGVAGNGY FL L +    + R+L+RA  FA           A +PD P SL+EG+AG+A FLAD
Sbjct:   78 RYLDSCKRASDLVWRKGLLRKGPGICHGVAGNGYVFLLLYRL-TGNKRYLYRAAKFADFMNSPQFQADARIPDSPYSLYEGIAGTACFLAD 167          
BLAST of mRNA_E-fasciculatus_F_contig10073.83.1 vs. uniprot
Match: A0A7R8WXX7_9CRUS (Hypothetical protein (Fragment) n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R8WXX7_9CRUS)

HSP 1 Score: 92.8 bits (229), Expect = 1.160e-20
Identity = 51/89 (57.30%), Postives = 59/89 (66.29%), Query Frame = 1
Query:   16 YLEMARRSSEVVWKRGLLTKGNGICHGVAGNGYAFLSLRKADAADGRHLHRARSFAGVCLVLLLASV--PDRPMSLFEGLAGSAAFLAD 276
            YLE AR++S+VVW+RGLLTKG GICHGVAGN Y FLS+ +    D   LHR   FA  C          PDRP+SLFEGLAG+  FL D
Sbjct:  213 YLEPARKASDVVWERGLLTKGYGICHGVAGNAYTFLSVYEM-THDPNQLHRTAQFAKFCSDYGKHGCRHPDRPLSLFEGLAGTIYFLND 300          
BLAST of mRNA_E-fasciculatus_F_contig10073.83.1 vs. uniprot
Match: A0A6M2CQU4_RHIMP (Putative eukaryotic lanthionine synthetase c-like protein (Fragment) n=1 Tax=Rhipicephalus microplus TaxID=6941 RepID=A0A6M2CQU4_RHIMP)

HSP 1 Score: 91.3 bits (225), Expect = 1.600e-20
Identity = 50/90 (55.56%), Postives = 58/90 (64.44%), Query Frame = 1
Query:   13 RYLEMARRSSEVVWKRGLLTKGNGICHGVAGNGYAFLSLRKADAADGRHLHRARSFAGVCLV--LLLASVPDRPMSLFEGLAGSAAFLAD 276
            RYLE   RS +V+W+RGLL KG  ICHG+ G+GYAFL L +    + R LHRAR FA          A  PD P SLFEGLAG+A FLAD
Sbjct:  146 RYLESCLRSGQVIWERGLLRKGPSICHGIGGSGYAFLLLYRL-TTELRWLHRARQFAEFMFTDEFKQARTPDCPYSLFEGLAGTACFLAD 234          
BLAST of mRNA_E-fasciculatus_F_contig10073.83.1 vs. uniprot
Match: A0A818UPU1_9BILA (Hypothetical protein n=6 Tax=Rotaria sordida TaxID=392033 RepID=A0A818UPU1_9BILA)

HSP 1 Score: 93.2 bits (230), Expect = 2.080e-20
Identity = 48/92 (52.17%), Postives = 61/92 (66.30%), Query Frame = 1
Query:   10 SRYLEMARRSSEVVWKRGLLTKGNGICHGVAGNGYAFLSLRKADAADGRHLHRARSFAGVCLVL---LLASVPDRPMSLFEGLAGSAAFLAD 276
            S Y++ A  + +V+W+RGLLTKG G+CHG+AGNGYA L L +    D + LHRA  FA  CL      LA  PD P SLFEGLAG+  ++AD
Sbjct:  299 SSYIQRASSAGDVIWERGLLTKGYGLCHGIAGNGYALLDLYRV-TQDPKWLHRAIKFAEFCLDYGKHNLARTPDHPFSLFEGLAGTIYYMAD 389          
BLAST of mRNA_E-fasciculatus_F_contig10073.83.1 vs. uniprot
Match: A0A1B6HZP9_9HEMI (Uncharacterized protein (Fragment) n=1 Tax=Homalodisca liturata TaxID=320908 RepID=A0A1B6HZP9_9HEMI)

HSP 1 Score: 87.4 bits (215), Expect = 2.630e-20
Identity = 48/88 (54.55%), Postives = 56/88 (63.64%), Query Frame = 1
Query:   19 LEMARRSSEVVWKRGLLTKGNGICHGVAGNGYAFLSLRKADAADGRHLHRARSFAGVCLVLLLASV--PDRPMSLFEGLAGSAAFLAD 276
            ++ +  S EVVW+RGL TKG  ICHGV+GN Y FL L +    D +HL+RA  FA  CL L       PDRP SLFEGLAG A FL D
Sbjct:   18 IQQSLESGEVVWQRGLCTKGYSICHGVSGNAYTFLQLYQM-TGDPKHLYRAGCFADWCLSLPKHQQLQPDRPFSLFEGLAGVAYFLVD 104          
The following BLAST results are available for this feature:
BLAST of mRNA_E-fasciculatus_F_contig10073.83.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KPR2_9PHAE7.010e-3289.23Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LDA7_ECTSI1.990e-2998.28LanC lantibiotic synthetase component C-like 2 n=1... [more]
A0A091TMB8_PHALP3.320e-2153.33LanC-like 2 (Fragment) n=1 Tax=Phaethon lepturus T... [more]
A0A8I6TI19_CIMLE7.860e-2156.67Uncharacterized protein n=3 Tax=Cimex lectularius ... [more]
A0A0L7QX72_9HYME1.010e-2054.02LanC-like protein 2 n=1 Tax=Habropoda laboriosa Ta... [more]
E9IC62_SOLIN1.100e-2051.65Uncharacterized protein (Fragment) n=2 Tax=Solenop... [more]
A0A7R8WXX7_9CRUS1.160e-2057.30Hypothetical protein (Fragment) n=1 Tax=Darwinula ... [more]
A0A6M2CQU4_RHIMP1.600e-2055.56Putative eukaryotic lanthionine synthetase c-like ... [more]
A0A818UPU1_9BILA2.080e-2052.17Hypothetical protein n=6 Tax=Rotaria sordida TaxID... [more]
A0A1B6HZP9_9HEMI2.630e-2054.55Uncharacterized protein (Fragment) n=1 Tax=Homalod... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E-fasciculatus_F_contig10073contigE-fasciculatus_F_contig10073:3666..4379 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus Ec846f_Ec191_B4_f female2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.5
Seed ortholog evalue3.7e-22
Seed eggNOG ortholog2880.D8LDA7
EggNOG free text desc.glutathione binding
EggNOG OGsKOG2787@1,KOG2787@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionLanC lantibiotic synthetase component C-like 2
Ec32 orthologEc-25_001920.1
Exons2
Model size276
Cds size252
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E-fasciculatus_F_contig10073.83.1prot_E-fasciculatus_F_contig10073.83.1Ectocarpus fasciculatus Ec846f_Ec191_B4_f femalepolypeptideE-fasciculatus_F_contig10073 3666..4355 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927509.396592-CDS-E-fasciculatus_F_contig10073:3665..37301622927509.396592-CDS-E-fasciculatus_F_contig10073:3665..3730Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10073 3666..3730 -
1695995570.3897393-CDS-E-fasciculatus_F_contig10073:3665..37301695995570.3897393-CDS-E-fasciculatus_F_contig10073:3665..3730Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10073 3666..3730 -
1622927509.4110353-CDS-E-fasciculatus_F_contig10073:4168..43551622927509.4110353-CDS-E-fasciculatus_F_contig10073:4168..4355Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10073 4169..4355 -
1695995570.4013247-CDS-E-fasciculatus_F_contig10073:4168..43551695995570.4013247-CDS-E-fasciculatus_F_contig10073:4168..4355Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleCDSE-fasciculatus_F_contig10073 4169..4355 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622927509.423212-UTR-E-fasciculatus_F_contig10073:4355..43791622927509.423212-UTR-E-fasciculatus_F_contig10073:4355..4379Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10073 4356..4379 -
1695995570.4114587-UTR-E-fasciculatus_F_contig10073:4355..43791695995570.4114587-UTR-E-fasciculatus_F_contig10073:4355..4379Ectocarpus fasciculatus Ec846f_Ec191_B4_f femaleUTRE-fasciculatus_F_contig10073 4356..4379 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E-fasciculatus_F_contig10073.83.1

>prot_E-fasciculatus_F_contig10073.83.1 ID=prot_E-fasciculatus_F_contig10073.83.1|Name=mRNA_E-fasciculatus_F_contig10073.83.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=polypeptide|length=84bp
MARRSSEVVWKRGLLTKGNGICHGVAGNGYAFLSLRKADAADGRHLHRAR
SFAGVCLVLLLASVPDRPMSLFEGLAGSAAFLAD
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mRNA from alignment at E-fasciculatus_F_contig10073:3666..4379-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E-fasciculatus_F_contig10073.83.1 ID=mRNA_E-fasciculatus_F_contig10073.83.1|Name=mRNA_E-fasciculatus_F_contig10073.83.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=mRNA|length=714bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10073:3666..4379- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
GGATCATGGAGCAGGTATCTTGAGATGGCAAGGCGGTCGTCAGAGGTGGT GTGGAAGAGAGGCCTGCTGACGAAGGGTAACGGCATCTGCCACGGGGTGG CCGGGAACGGCTACGCCTTCCTGTCGCTGAGAAAAGCCGACGCCGCCGAC GGGCGACACCTGCACAGGGCCAGGAGTTTCGCTGGTGTGTGCCTTGTTTT GTTGCTTGCCTGTTGGCTTGCTTGCTTGCTTGCTTGATGGCTTGACCGCT AAGTCATGCGAAGCATGAGTACGCCCTCCCCTCTCGCGTGGTCCAAACAG CTAAGGCANNNNNNNNNNTCCCCAGGTTTTGCTGCCTCCGCCGTCCTCGG CCCCAACCCCTCCACCGGCGCAAACGCCTCCTCCCGCGGAGACCCCTTCG GCCCCGGCGCCCACGTCCACCACCCCCGCGGCGGCGGCTTCGGTCTCGGC CGCTCGTCCTCCCACGACGCCGGCAAGAGCATCCACTCGGCCGGGTGGCC AAGCAACGGCTGCAACGGCGTCGGCGGGGACGGCGGCGGCGGCGGCGACT GCGGCGGCGCCGGGGGCGGCCGGGCCGGGGCCGGGGGTAGGTCCCACTCC GTCGGCAGCGGCGGCGCCTGCGGCGCCGGCGGCGAGATGCCGTCGCAAGC GGTGCCGGACAGGCCCATGTCGCTGTTCGAGGGGCTCGCGGGGTCCGCGG CGTTCCTAGCGGAC
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Coding sequence (CDS) from alignment at E-fasciculatus_F_contig10073:3666..4379-

>mRNA_E-fasciculatus_F_contig10073.83.1 ID=mRNA_E-fasciculatus_F_contig10073.83.1|Name=mRNA_E-fasciculatus_F_contig10073.83.1|organism=Ectocarpus fasciculatus Ec846f_Ec191_B4_f female|type=CDS|length=504bp|location=Sequence derived from alignment at E-fasciculatus_F_contig10073:3666..4379- (Ectocarpus fasciculatus Ec846f_Ec191_B4_f female)
ATGGCAAGGCGGTCGTCAGAGGTGGTGTGGAAGAGAGGCCTGCTGACGAA
GGGTAACGGCATCTGCCACGGGGTGGCCGGGAACGGCTACGCCTTCCTGT
CGCTGAGAAAAGCCGACGCCGCCGACGGGCGACACCTGCACAGGGCCAGG
AGTTTCGCTGGTGTGTGCCTTGTTTTGTTGCTTGCCTATGGCAAGGCGGT
CGTCAGAGGTGGTGTGGAAGAGAGGCCTGCTGACGAAGGGTAACGGCATC
TGCCACGGGGTGGCCGGGAACGGCTACGCCTTCCTGTCGCTGAGAAAAGC
CGACGCCGCCGACGGGCGACACCTGCACAGGGCCAGGAGTTTCGCTGGTG
TGTGCCTTGTTTTGTTGCTTGCCTCGGTGCCGGACAGGCCCATGTCGCTG
TTCGAGGGGCTCGCGGGGTCCGCGGCGTTCCTAGCGGACCGGTGCCGGAC
AGGCCCATGTCGCTGTTCGAGGGGCTCGCGGGGTCCGCGGCGTTCCTAGC
GGAC
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