mRNA_E_fasciculatus_S2_contig9880.17880.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9880.17880.1
Unique NamemRNA_E_fasciculatus_S2_contig9880.17880.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9880.17880.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G691_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 2.110e-13
Identity = 44/58 (75.86%), Postives = 47/58 (81.03%), Query Frame = 1 
Query:    1 RANRWMVRLGARDTANAGEATGGXXXXTGSEEAGERQLPPEMTAENLLKKARYVDIGK 174
            RANRWMVRLGARDTANAG   GG     GSEEAGER+LPPEMTAENLLKKA+ V  G+
Sbjct:  309 RANRWMVRLGARDTANAG---GG-----GSEEAGERRLPPEMTAENLLKKAQLVIHGR 358
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9880.17880.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized2.110e-1375.86protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9880contigE_fasciculatus_S2_contig9880:345..975 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score68.2
Seed ortholog evalue4.1e-09
Seed eggNOG ortholog2880.D7G691
Model size631
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.protein serine/threonine kinase activity
EggNOG OGsKOG0032@1,KOG0032@2759
Cds size483
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842630.8492188-UTR-E_fasciculatus_S2_contig9880:344..3591696842630.8492188-UTR-E_fasciculatus_S2_contig9880:344..359Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9880 345..359 +
1696842630.8849666-UTR-E_fasciculatus_S2_contig9880:842..9751696842630.8849666-UTR-E_fasciculatus_S2_contig9880:842..975Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9880 843..975 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842630.862115-CDS-E_fasciculatus_S2_contig9880:359..8421696842630.862115-CDS-E_fasciculatus_S2_contig9880:359..842Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9880 360..842 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9880.17880.1prot_E_fasciculatus_S2_contig9880.17880.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9880 360..842 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9880.17880.1

>prot_E_fasciculatus_S2_contig9880.17880.1 ID=prot_E_fasciculatus_S2_contig9880.17880.1|Name=mRNA_E_fasciculatus_S2_contig9880.17880.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=161bp
MVRLGARDTANAGEATGGGGGGTGSEEAGERQLPPEMTAENLLKKARYVD
IGKGGDVPPGRFTRPIQRNHTSRLMLLSVPSEIVHPSPSRGTQPYRGTTI
HDFTQQNADAAVALKTHGSEAPRTLHRRLERTNSTRYDLHNKLYCGTLAP
DLISGETSRE*
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mRNA from alignment at E_fasciculatus_S2_contig9880:345..975+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9880.17880.1 ID=mRNA_E_fasciculatus_S2_contig9880.17880.1|Name=mRNA_E_fasciculatus_S2_contig9880.17880.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=631bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9880:345..975+ (Ectocarpus fasciculatus EfasUO2)
AGAGCCAACCGCTGGATGGTGCGCCTGGGGGCACGCGACACGGCTAACGC
TGGCGAGGCTACAGGTGGCGGTGGTGGAGGCACCGGTTCGGAGGAAGCGG
GGGAACGGCAGCTTCCTCCGGAGATGACGGCGGAGAACCTCCTCAAGAAG
GCGAGATATGTAGATATCGGAAAGGGCGGAGACGTGCCACCAGGCCGGTT
TACCCGCCCTATACAACGTAATCATACAAGTCGACTAATGCTACTATCTG
TGCCAAGTGAGATAGTTCACCCGTCTCCCTCTAGAGGGACCCAGCCCTAT
AGAGGGACCACCATCCACGACTTTACGCAGCAAAATGCAGATGCGGCGGT
GGCGTTAAAGACACACGGCAGTGAGGCACCAAGGACCTTGCATCGTAGAC
TGGAGAGAACGAATAGCACGCGCTACGATCTACATAATAAGCTATATTGC
GGAACGCTTGCTCCTGACTTAATCAGTGGGGAAACCAGCAGGGAATGAAT
ACATGGGTGATCCCTCTACACAAGGGGTGACCACGCGTCGTCAACGGTCA
ATCGAGTATGACCAGCAATCGAATGAGGACAGAGGACGCGTGGTCAATGG
TCTGTAACCGCTAAGGCATGCAAAACATAAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9880:345..975+

>mRNA_E_fasciculatus_S2_contig9880.17880.1 ID=mRNA_E_fasciculatus_S2_contig9880.17880.1|Name=mRNA_E_fasciculatus_S2_contig9880.17880.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=483bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9880:345..975+ (Ectocarpus fasciculatus EfasUO2)
ATGGTGCGCCTGGGGGCACGCGACACGGCTAACGCTGGCGAGGCTACAGG
TGGCGGTGGTGGAGGCACCGGTTCGGAGGAAGCGGGGGAACGGCAGCTTC
CTCCGGAGATGACGGCGGAGAACCTCCTCAAGAAGGCGAGATATGTAGAT
ATCGGAAAGGGCGGAGACGTGCCACCAGGCCGGTTTACCCGCCCTATACA
ACGTAATCATACAAGTCGACTAATGCTACTATCTGTGCCAAGTGAGATAG
TTCACCCGTCTCCCTCTAGAGGGACCCAGCCCTATAGAGGGACCACCATC
CACGACTTTACGCAGCAAAATGCAGATGCGGCGGTGGCGTTAAAGACACA
CGGCAGTGAGGCACCAAGGACCTTGCATCGTAGACTGGAGAGAACGAATA
GCACGCGCTACGATCTACATAATAAGCTATATTGCGGAACGCTTGCTCCT
GACTTAATCAGTGGGGAAACCAGCAGGGAATGA
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