mRNA_E_fasciculatus_S2_contig984.17845.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig984.17845.1
Unique NamemRNA_E_fasciculatus_S2_contig984.17845.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig984.17845.1 vs.
Match: P4Hc (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2K6_ECTSI)

HSP 1 Score: 434 bits (1116), Expect = 3.500e-147
Identity = 255/450 (56.67%), Postives = 258/450 (57.33%), Query Frame = 1 
Query:  334 SVAATSALQFAQLGQQLLPQQQLHGFGEIGSSVAPAALVPQAQLAGIYPSASLTTTTSVDTAVSTHVVDGGVAXXXXXXXXXXXXXXXXLSDIGGAVVPLPAANSGPTFTFNGXXXXXXXVEPLAGPVFQPGFNPTALQNQQQPAPVFTTPSSTRFPLSAFVGEQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXPMVMPVQQQXXXXXXXXXXXXXQLQPGTPAASITAAFTPFPAQSFLQLNPLYPGLRNLWETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMTLTGKPIEHLELPQVGRYYTSQKYANHWDAFDLNTEDGRRFAQNGGQRVCTVLVYLNDVPSGGCTAFPQLGMKVQPKKAGMAVVFFPATLDGALDSRLLHAAEPAIDTKWVSQIWIRQGAYHGTPTARIPAI 1683
            SV ATSALQFAQLGQQLLP QQLHGFG IGSSVAPAALVP AQLAGI+P+ASLTT TSVDT                                                                                                                                                                                       LYPGLRNL ETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVM LTGKPIEHLELPQVGRYYTSQKYANHWDAFDLNTEDGRRFAQNGGQRVCTVLVYLNDVPSGGCTAFPQLGMKVQP+K GMAVVFFPATLDG LDSRLLHAAEPAIDTKWVSQIWIRQGAYHGTPTARIPAI
Sbjct:   28 SVPATSALQFAQLGQQLLPHQQLHGFGGIGSSVAPAALVPPAQLAGIHPTASLTTATSVDTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LYPGLRNLRETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMALTGKPIEHLELPQVGRYYTSQKYANHWDAFDLNTEDGRRFAQNGGQRVCTVLVYLNDVPSGGCTAFPQLGMKVQPRK-GMAVVFFPATLDGVLDSRLLHAAEPAIDTKWVSQIWIRQGAYHGTPTARIPAI 294
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig984.17845.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JMQ8_9PHAE)

HSP 1 Score: 362 bits (928), Expect = 6.420e-117
Identity = 261/356 (73.31%), Postives = 272/356 (76.40%), Query Frame = 1 
Query:    7 GSSSDKSGTASHAALQQVGVYSGSYAAVPGVFGGQTL--QHGGGSTASQPSDRPPTTAPTQPPHAASSINGTANHMVLDNAPSLHHPXXXXXXXXXXXXXXXXXXXXARQGSVAATSALQFAQLGQQLLPQQQLHGFGEIGSSVAPAALVPQAQLAGIYPSASLTTTTSVDTAVSTHVVDGGVAXXXXXXXXXXXXXXXXLSDIGGAVVPLPAANSGPTFTFNGXXXXXXXVEPLAGPVFQPGFNPTALQNQQQPAPVFTTPSSTRFPLSAFVGEQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXPMVMPVQQQXXXXXXXXXXXXXQLQPGTPAASITAAFTPFPAQSFLQLNPL 1068
            G  SD +GT SH   QQ GVYSGSYA VPGVFGGQT+  QHGGGS    PS   P  AP+QPP AA SI  TANHMVLDN PSL HP                     +Q S+AATS LQFAQLGQQLLPQQQLHGF  IGSSVAPAALVP AQLAGI+P+ASLT+TTSVDTAVSTHVVD GVA                LSDIGGAVVPLP ANSGPT+TFNG  XXXX  +PL  PVFQPGFNPTALQNQQQPAPVFTTPSST FPLSAFVGEQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXPMVMPV QQ XXXXXXXXXXXX   PGTPAASITAAF PFP QSFLQLNP+
Sbjct:   19 GGRSDTNGTVSHVTSQQAGVYSGSYA-VPGVFGGQTVTSQHGGGSAPRPPSVSAPPAAPSQPPQAAGSIKSTANHMVLDNDPSLDHPPAVTSVAWGGATIASPAVLFGQQESIAATSTLQFAQLGQQLLPQQQLHGFRGIGSSVAPAALVPPAQLAGIHPTASLTSTTSVDTAVSTHVVDCGVAGGGAVTSVLQQHPPPPLSDIGGAVVPLPVANSGPTYTFNGGGXXXXVSDPLTRPVFQPGFNPTALQNQQQPAPVFTTPSSTGFPLSAFVGEQQQXXXXXXXXXXXXXXXXXXXXXXXXXXXPMVMPVIQQQXXXXXXXXXXXXX--PGTPAASITAAFAPFPPQSFLQLNPV 371
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig984.17845.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S9J3_9STRA)

HSP 1 Score: 279 bits (714), Expect = 1.980e-87
Identity = 138/216 (63.89%), Postives = 162/216 (75.00%), Query Frame = 1 
Query: 1036 PAQSFLQLNPLYPGLRNLWETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMTLTGKPIEHLELPQVGRYYTSQKYANHWDAFDLNTEDGRRFAQNGGQRVCTVLVYLNDVPSGGCTAFPQLGMKVQPKKAGMAVVFFPATLDGALDSRLLHAAEPAIDTKWVSQIWIRQGAYHGTPTARIPAI 1683
            P + +L LNP YPGL  +   PP++ V  F S  ECD LI  A  +M  +PVVGAG GEVS SRTSS+C+LAREDLPT+C KV  LTG P+EHLELPQVGRY   + Y  H+DAFD ++ DGRRFAQNGGQRV TVLVYLNDV  GGCT+F +LG+ +QPKK G A+VFFPA+LDG LD   LHAAEPA+D KWVSQIWIRQ AY+G  + RI  I
Sbjct:   27 PPRQYLPLNPAYPGLTAVHTDPPVFTVAIFLSEAECDDLINSAQGHMTPAPVVGAGNGEVSVSRTSSTCYLAREDLPTICTKVCALTGCPVEHLELPQVGRYRGGEFYKAHYDAFDTSSPDGRRFAQNGGQRVATVLVYLNDVARGGCTSFSKLGLSIQPKK-GTALVFFPASLDGMLDQHYLHAAEPALDLKWVSQIWIRQKAYNGLASVRIAPI 241
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig984.17845.1 vs.
Match: Fe2OG (dioxygenase domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YJM0_9STRA)

HSP 1 Score: 273 bits (698), Expect = 2.250e-85
Identity = 131/200 (65.50%), Postives = 153/200 (76.50%), Query Frame = 1 
Query: 1075 GLRNLWETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMTLTGKPIEHLELPQVGRYYTSQKYANHWDAFDLNTEDGRRFAQNGGQRVCTVLVYLNDVPSGGCTAFPQLGMKVQPKKAGMAVVFFPATLDGALDSRLLHAAEPAIDTKWVSQIWIRQGAYHGTPTARI 1674
            G+R L   PP YVV+ F S  EC+ LI  A  +M  SPVVG G GE+S SRTS+SC+ AREDLP++CHKV  LTGKP +HLELPQVGRY  +Q YA H DAFDL T+DG RFAQNGGQRV TVL+YLNDVP GG T+FP+LG+ V P++ GMAVVFFP+TLDG  D   LH AEPA+D K+VSQIWIRQG Y G PT R+
Sbjct:   16 GVRQLHGHPPFYVVEGFLSTQECEGLIRQADGFMCTSPVVGKGNGEISPSRTSTSCYFAREDLPSICHKVCMLTGKPADHLELPQVGRYLPTQFYAPHLDAFDLKTQDGMRFAQNGGQRVATVLIYLNDVPRGGNTSFPRLGLSVTPRR-GMAVVFFPSTLDGCADELALHTAEPAVDVKYVSQIWIRQGLYTGEPTRRL 214
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig984.17845.1 vs.
Match: Hypothetical (protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1UYE3_9STRA)

HSP 1 Score: 276 bits (706), Expect = 5.740e-84
Identity = 138/229 (60.26%), Postives = 166/229 (72.49%), Query Frame = 1 
Query:  991 PGTPAASITAAFTPFPAQSFLQLNPLYPGLRNLWETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMTLTGKPIEHLELPQVGRYYTSQKYANHWDAFDLNTEDGRRFAQNGGQRVCTVLVYLNDVPSGGCTAFPQLGMKVQPKKAGMAVVFFPATLDGALDSRLLHAAEPAIDTKWVSQIWIRQGAYHGTPTARIP 1677
            P   A ++T    P     +  +NP YPGLR L  TPP++ VD+F S  EC  L+ +A +    +PVVG GAGEVS SRTSS+C+LAREDLP    KV  LTGKPIEH ELPQVGRY+ SQ+Y  H+DAFDL+ EDGRRFA NGGQR  TVLVYLNDV  GG T+FP L + VQP++ GMA+VFFPAT+DG LD   LHAA PA+DTK+VSQ+WIRQG Y G P+ R+P
Sbjct:  158 PPESATALTVQERPLIPPVYNGVNPHYPGLRLLNATPPIFAVDNFLSPFECQFLMEVAQDSFGPAPVVGKGAGEVSPSRTSSTCYLAREDLPDYLRKVSLLTGKPIEHCELPQVGRYFPSQQYLQHFDAFDLSNEDGRRFASNGGQRTVTVLVYLNDVHQGGATSFPALNLDVQPRR-GMAIVFFPATVDGYLDKMALHAANPAVDTKYVSQVWIRQGEYKGQPSKRLP 385
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig984.17845.1 vs.
Match: Hypothetical (protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KY14_9STRA)

HSP 1 Score: 275 bits (702), Expect = 5.270e-83
Identity = 134/223 (60.09%), Postives = 166/223 (74.44%), Query Frame = 1 
Query: 1012 ITAAFTPFPAQSFLQLNPLYPGLRNLWETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMTLTGKPIEHLELPQVGRYYTSQKYANHWDAFDLNTEDGRRFAQNGGQRVCTVLVYLNDVPSGGCTAFPQLGMKVQPKKAGMAVVFFPATLDGALDSRLLHAAEPAIDTKWVSQIWIRQGAYHGTPTARIPA 1680
            +T    P  A  +  +NP YPGLR L  +PP++ V++F S  ECD LI  A +    +PVVG G+GE+S SRTSS+C+LAREDLP +  KV  LTGKPI+H ELPQVGRY  SQ+Y  H+DAFDL+TEDGRRFA NGGQR  TVL+YLNDV  GG T FP L + VQP + GMA++FFPAT+DG LD   LHAA PA+DTK+VSQ+WIRQG+Y+G P+ R+PA
Sbjct:  175 LTVQDRPMTAPVYNGVNPHYPGLRVLHNSPPVFCVENFLSPHECDFLINAAHDSFGPAPVVGKGSGEISPSRTSSTCYLAREDLPDLMRKVTLLTGKPIDHCELPQVGRYMASQQYLQHYDAFDLSTEDGRRFASNGGQRTITVLIYLNDVHQGGATRFPALNLDVQPVR-GMALIFFPATIDGMLDQMSLHAALPAVDTKYVSQVWIRQGSYNGQPSKRLPA 396
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig984.17845.1 vs.
Match: Hypothetical (protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UA87_9STRA)

HSP 1 Score: 265 bits (678), Expect = 2.360e-81
Identity = 128/206 (62.14%), Postives = 157/206 (76.21%), Query Frame = 1 
Query: 1057 LNPLYPGLRNLWETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMTLTGKPIEHLELPQVGRYYTSQKYANHWDAFDLNTEDGRRFAQNGGQRVCTVLVYLNDVPSGGCTAFPQLGMKVQPKKAGMAVVFFPATLDGALDSRLLHAAEPAIDTKWVSQIWIRQGAYHGTPTARI 1674
            +NP YPGL  L  +PP++ VD+F S  ECD LIA + +    +PVVG G GEVSE+RTSS+C+LAREDLP   +K+M LTGKP+EH ELPQ+GRY  SQKY  H+DAFDL  E GRRFA NGGQR  TVL+YLNDV +GG T FP L ++V+P++ GMA+VFFPAT+DG LD   LHAA PAIDTK+VSQ+WIRQG Y G P+  +
Sbjct:   55 VNPSYPGLHVLNSSPPVFCVDNFLSPEECDFLIASSLDSFAPAPVVGKGGGEVSETRTSSTCYLAREDLPLYMNKIMALTGKPLEHCELPQIGRYLPSQKYLQHFDAFDLGDEHGRRFASNGGQRTVTVLLYLNDVMNGGHTTFPSLNLEVKPRR-GMAIVFFPATIDGYLDKMALHAALPAIDTKFVSQVWIRQGNYEGQPSKHL 259
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig984.17845.1 vs.
Match: Hypothetical (protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A6U6I918_9STRA)

HSP 1 Score: 268 bits (684), Expect = 3.940e-81
Identity = 134/213 (62.91%), Postives = 158/213 (74.18%), Query Frame = 1 
Query: 1036 PAQSFLQLNPLYPGLRNLWETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMTLTGKPIEHLELPQVGRYYTSQKYANHWDAFDLNTEDGRRFAQNGGQRVCTVLVYLNDVPSGGCTAFPQLGMKVQPKKAGMAVVFFPATLDGALDSRLLHAAEPAIDTKWVSQIWIRQGAYHGTPTARI 1674
            PA  F  +NP YPGLR L   PP++ VDDF S  ECD LI  A + +  +PVVG G GEVS++RTSS+CFLAREDLP    KV  LTGKP  H ELPQVGRY  SQ Y  H+DAFDL T+DGRR A  GGQR  TVLVYLNDV +GG TAFP+L + V+PK+ G AVVFFPAT+DG LD R+LHAA PA+D K+VSQ+WIRQGA+ G P+ R+
Sbjct:  137 PAPVFNGVNPDYPGLRVLSSDPPVFAVDDFLSPAECDFLIHAASDALQTAPVVGRGGGEVSQARTSSTCFLAREDLPEYVAKVSALTGKPPGHCELPQVGRYLQSQHYQQHYDAFDLGTDDGRRVASKGGQRTVTVLVYLNDVENGGETAFPELKLAVKPKR-GKAVVFFPATVDGYLDQRVLHAATPAVDVKYVSQVWIRQGAHDGVPSKRL 348
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig984.17845.1 vs.
Match: Hypothetical (protein n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4N7N8_9STRA)

HSP 1 Score: 261 bits (668), Expect = 1.090e-80
Identity = 131/209 (62.68%), Postives = 155/209 (74.16%), Query Frame = 1 
Query: 1048 FLQLNPLYPGLRNLWETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMTLTGKPIEHLELPQVGRYYTSQKYANHWDAFDLNTEDGRRFAQNGGQRVCTVLVYLNDVPSGGCTAFPQLGMKVQPKKAGMAVVFFPATLDGALDSRLLHAAEPAIDTKWVSQIWIRQGAYHGTPTARI 1674
            F  +NP  PGLR L   PP++ VDDF S  ECD LI  A + +  +PVVG G GEVS++RTSS+CFLAREDLP    KV  LTGKP  H ELPQVGRY  SQ Y  H+DAFDL T+DGRR A  GGQR  TVLVYLNDV +GG TAFP+L + V+PK+ G AVVFFPAT+DG LD R+LHAA PA+D K+VSQ+WIRQGA+ G P+ R+
Sbjct:    1 FNGVNPDSPGLRVLSSDPPVFAVDDFLSPAECDFLIHAASDALQTAPVVGRGGGEVSQARTSSTCFLAREDLPEYVAKVSALTGKPPGHCELPQVGRYLQSQHYQQHYDAFDLGTDDGRRVASKGGQRTVTVLVYLNDVENGGETAFPELKLAVKPKR-GKAVVFFPATVDGYLDQRVLHAATPAVDVKYVSQVWIRQGAHDGVPSKRL 208
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig984.17845.1 vs.
Match: P4Hc (domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JHE4_FISSO)

HSP 1 Score: 261 bits (666), Expect = 4.930e-80
Identity = 127/206 (61.65%), Postives = 157/206 (76.21%), Query Frame = 1 
Query: 1057 LNPLYPGLRNLWETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGAGAGEVSESRTSSSCFLAREDLPTVCHKVMTLTGKPIEHLELPQVGRYYTSQKYANHWDAFDLNTEDGRRFAQNGGQRVCTVLVYLNDVPSGGCTAFPQLGMKVQPKKAGMAVVFFPATLDGALDSRLLHAAEPAIDTKWVSQIWIRQGAYHGTPTARI 1674
            +NP YPGLR L  +PP++ V++F +  ECD LI  A + +  +PVVG GAGE+S SRTSS+C+LAREDL  +  KV  LTGKP EH ELPQVGRY+  +KY  H+DAFDL+TEDGRRFA NGGQR  TVL+YLNDV  GG T FP L + +QP++ GMA+VFFPAT+DG LD   LHAA PAIDTK+VSQ+WIRQ  Y+G P+ R+
Sbjct:    9 VNPSYPGLRVLNNSPPIFAVENFLTPYECDFLIHAAVDALGPAPVVGKGAGEISPSRTSSTCYLAREDLGDLMRKVSLLTGKPPEHCELPQVGRYFYQEKYLQHFDAFDLSTEDGRRFAANGGQRTVTVLIYLNDVMRGGATRFPALNLDIQPRR-GMALVFFPATVDGMLDKMALHAALPAIDTKFVSQVWIRQSIYNGQPSKRL 213
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig984.17845.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
P4Hc3.500e-14756.67domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized6.420e-11773.31protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical1.980e-8763.89protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
Fe2OG2.250e-8565.50dioxygenase domain-containing protein n=1 Tax=Trib... [more]
Hypothetical5.740e-8460.26protein n=1 Tax=Grammatophora oceanica TaxID=21045... [more]
Hypothetical5.270e-8360.09protein n=1 Tax=Amphora coffeiformis TaxID=265554 ... [more]
Hypothetical2.360e-8162.14protein n=1 Tax=Attheya septentrionalis TaxID=4202... [more]
Hypothetical3.940e-8162.91protein n=1 Tax=Odontella aurita TaxID=265563 RepI... [more]
Hypothetical1.090e-8062.68protein n=1 Tax=Odontella aurita TaxID=265563 RepI... [more]
P4Hc4.930e-8061.65domain-containing protein n=2 Tax=Fistulifera sola... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig984contigE_fasciculatus_S2_contig984:3898..9608 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score439.1
Seed ortholog evalue3.1e-120
Seed eggNOG ortholog2880.D7G2K6
Model size1686
KEGG rclassRC00478
KEGG koko:K00472
KEGG ReactionR01252
KEGG Pathwayko00330,ko01100,map00330,map01100
Hectar predicted targeting categoryother localisation
Exons6
EggNOG free text desc.procollagen-proline 4-dioxygenase activity
EggNOG OGsKOG1591@1,KOG1591@2759
Ec32 ortholog descriptionProlyl 4-hydroxylase, alpha subunit
Ec32 orthologEc-11_002580.1
EC1.14.11.2
Cds size1686
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig984.17845.1prot_E_fasciculatus_S2_contig984.17845.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig984 3898..9608 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842627.4787657-CDS-E_fasciculatus_S2_contig984:3897..40611696842627.4787657-CDS-E_fasciculatus_S2_contig984:3897..4061Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig984 3898..4061 -
1696842627.4922464-CDS-E_fasciculatus_S2_contig984:4448..46411696842627.4922464-CDS-E_fasciculatus_S2_contig984:4448..4641Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig984 4449..4641 -
1696842627.5035-CDS-E_fasciculatus_S2_contig984:6146..64101696842627.5035-CDS-E_fasciculatus_S2_contig984:6146..6410Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig984 6147..6410 -
1696842627.5215607-CDS-E_fasciculatus_S2_contig984:7416..75481696842627.5215607-CDS-E_fasciculatus_S2_contig984:7416..7548Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig984 7417..7548 -
1696842627.5355933-CDS-E_fasciculatus_S2_contig984:7605..82051696842627.5355933-CDS-E_fasciculatus_S2_contig984:7605..8205Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig984 7606..8205 -
1696842627.550421-CDS-E_fasciculatus_S2_contig984:9275..96081696842627.550421-CDS-E_fasciculatus_S2_contig984:9275..9608Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig984 9276..9608 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig984.17845.1

>prot_E_fasciculatus_S2_contig984.17845.1 ID=prot_E_fasciculatus_S2_contig984.17845.1|Name=mRNA_E_fasciculatus_S2_contig984.17845.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=562bp
MGGSSSDKSGTASHAALQQVGVYSGSYAAVPGVFGGQTLQHGGGSTASQP
SDRPPTTAPTQPPHAASSINGTANHMVLDNAPSLHHPPAPTPPSSGGSHH
PPPAPPPARQGSVAATSALQFAQLGQQLLPQQQLHGFGEIGSSVAPAALV
PQAQLAGIYPSASLTTTTSVDTAVSTHVVDGGVAGGGAMTSMLQQQPPPP
LSDIGGAVVPLPAANSGPTFTFNGGGGGGGGVEPLAGPVFQPGFNPTALQ
NQQQPAPVFTTPSSTRFPLSAFVGEQQQQQKVAPVFTIPPSTGLAPSAFG
GEQQQPMVMPVQQQQQLQQQQQHEQHRQLQPGTPAASITAAFTPFPAQSF
LQLNPLYPGLRNLWETPPLYVVDDFFSGPECDALIALAGNYMIVSPVVGA
GAGEVSESRTSSSCFLAREDLPTVCHKVMTLTGKPIEHLELPQVGRYYTS
QKYANHWDAFDLNTEDGRRFAQNGGQRVCTVLVYLNDVPSGGCTAFPQLG
MKVQPKKAGMAVVFFPATLDGALDSRLLHAAEPAIDTKWVSQIWIRQGAY
HGTPTARIPAI*
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mRNA from alignment at E_fasciculatus_S2_contig984:3898..9608-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig984.17845.1 ID=mRNA_E_fasciculatus_S2_contig984.17845.1|Name=mRNA_E_fasciculatus_S2_contig984.17845.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5711bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig984:3898..9608- (Ectocarpus fasciculatus EfasUO2)
ATGGGCGGGAGCAGCAGCGACAAAAGTGGCACGGCGAGCCACGCCGCCTT
GCAGCAGGTGGGCGTTTACAGCGGCAGCTACGCTGCCGTGCCAGGAGTGT
TTGGCGGGCAAACTTTGCAACATGGAGGAGGTTCAACTGCTAGCCAGCCT
TCCGATAGGCCACCAACCACGGCACCGACACAGCCACCACATGCAGCAAG
CAGCATCAACGGCACCGCGAACCACATGGTGCTGGATAACGCCCCATCTC
TTCACCATCCTCCTGCCCCCACCCCACCCTCATCCGGCGGCAGCCACCAC
CCCCCCCCCGCCCCCCCCCCCGCCCGGCAGGGGGTGCGCGTGCGTGGCTT
TTTTTTTTTTTTTTTGCAGCTGTACGGTAAAACAGCATGGGAGTCAGCGA
CCGCCCCTTGTCCCTGAGCCTTGTAATGGTACACAGCATTTGGAGCTGGC
TGATTCCATGTGTATTTTCTAAAGGTAAAGGGGGCTGCAGACGTGCAGAC
GTCAGAAAACTGATCTTGAATGTGGGCGGCTGATTTTTAACGAAAGAGCG
CTTACATCATTCAGCAGTAGCGCCCACGGACTATCCAAAGGTTGTGGCAA
TAAAGCGGCTACCAATACAACAGGTTTTTTATCCGTCATCATTCCATGCA
GTCTACCTGCTCCACACACTTTCTCTTAACCCAAGAAATTTTCCCCGTTC
GTACATCTCCATTCAAGACTACAAACAGCCGAAACGGCGCGTGCCAAAAT
GCGATTGCGAGTTCCGACCTGTGTATGATGGAGCAGGGACGGGCGTGCGG
CTACATTTGCCGTCACTGGCCTACATAATTTCCCGAATAGCGGGTAACAG
CGTTACTCATACCACGAGATACCTTGGAAGACCTGGTGTGGGGTTTCGTG
GCGGCGACTACTATCAAGCAGTCGTTGGTTTGAATGCAGATTTTGTGGAG
TGTTTGAACCCAGCTGGGGCCTTCCTTTAGCACGACTCCAGCATTAGATC
TAAGAGTGCCAACGCGCAGGTCGCTGCTACTTCTACATTATTTCCTCAAG
TGATGCAGCGTTTTACATTTGGACTTGGCAACGCCAGACCATCGTTTTCC
ATTTTTGGACCTTCACTATCTTGGAATTTGGCCCGAACCTATCTACAGCC
TTGTGATAGCTGGTCGCGTTTGGCCCCCTGGTTCGGTCCACATGGTACGA
AACGTTGATATTTCGTAGTACACTTGCGGACACCGCATTTTAGCGTGCTG
CAGAGCGGGTGGTTTGAAGCCCACATGGTGGTGAGTATCCGTGCAGCCCT
TGGTTGGCCCATAACATCGACAGCCCGGTCTCGTCATTCGGTCTTCGAAT
CGATCGTGCCTGCCTCTTCGTGTGTTCGTGTACGTCCACGCCTCTGGGGC
CAGAGCGTAGCGGCCACAAGCGCCTTGCAGTTCGCACAGCTAGGACAACA
GCTGCTCCCGCAGCAGCAGCTTCACGGATTTGGAGAGATCGGGTCGTCCG
TTGCCCCAGCCGCTCTGGTTCCACAGGCCCAACTGGCTGGCATATACCCT
TCCGCTTCGCTCACAACAACGACCTCCGTCGACACGGCTGTAAGCACGCA
TGTAGTCGATGGTGGAGTTGCTGGCGGGGGGGCGATGACATCAATGCTGC
AACAGCAACCCCCTCCACCCCTCAGCGATATCGGTGGCGCTGTAGTGCCC
CTCCCCGCGGCAAACAGCGGTCCCACATTCACCTTCAACGGCGGTGGCGG
CGGAGGCGGCGGTGTTGAACCGCTGGCGGGGCCTGTCTTTCAGCCTGGAT
TCAACCCAACGGCACTGCAGAACCAGCAGCAGCCGGCACCGGTATTCACG
ACCCCGTCGTCCACGCGCTTCCCGCTGTCTGCCTTCGTTGGCGAGCAGCA
ACAACAGCAGAAGGTGGCACCGGTGTTCACGATCCCCCCATCAACTGGAT
TGGCCCCCTCGGCCTTTGGTGGCGAGCAACAACAGCCAATGGTGATGCCA
GTGGTTCAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCA
GCAGCAACAGCAACAGCAGCAGCAGCTGCAGCAACAACAGCAGCATGAAC
AGCACCGGCAACTACAACCAGGAACGCCTGCTGCGAGCATCACTGCAGCG
TTCACGCCATTTCCCGCGCAGTCTTTCTTGCAGCTTAATCCGGTGAGAAG
ACAGAAAAACCGCGTTGTCTAATAAGCAGATTGCGGCGGTTGTATGCAAT
ACAAGGGTTATGACTTGTTAAGACCCCCTCCCCCCTACTCCTCCATATCC
TCCAACCATGCGCGCTGAACCCTGCCAACGTACCATCAACCTCTACACAA
TGTTGTCGTTTTGAGGCCATTTCGTGGCTAGACGGCCGTCGCTCACTTGT
TTTCGTTTGTCTTATCTACCACGCTTGGCGTGTTTTTCATCTGCTTCTTT
GTGCACCTCTTTTGAAACCTTTCGACAAAGGACAGAGCTAATACCACGGG
GGTGGGATCGGAATTTGAGATTTCGGCTACGAGCAGCTAGCCTGACCCCC
GAGCCGAGGAGGCTGACTGATTGTTGGAGGCGCCGCCCCTCGCAGCATGT
TTTTTACGGAATTTGCGTGCGCGGCTCGCAGGTCGAATTGCGACGTTCTC
GCGACCCCTGGTTGCTCAAATGTCCCCAACTTCGCCCGCATGATGCAGTG
CGCTTGCCGATTCTTTCAACTCGCATCTCGTGAGAAAAGGACATGCACGT
ACGAGCGTGTAGTTTGTATTGACACCCGTACTCTGCCGATGGCAGCGATG
GCAGACATGTTTCACGGTTTCTTGTAGCGTTCATGATCTTGCAATACGTT
CATCGACTCGCACACTCCCCCGATGCCAACGTGCACACCACACGTGCTTG
CTTGCGGGTGAAATACTCACCTGCTGCGGTGTGTTGGGCGTAGCGGGGCT
GTTGTCTAATGAATAGCCGCCAGGCAGGCTTTTCTACTACACGTCTTTCG
TTCTTCGCTGCGCTCTTTCAACCAATACGCACGGTGATCGCGCCATTTCA
CGTCAACCCGACCATTGTGCCTACTCGTGGCCCGGGCGTGTGCGTATGCG
TGTGTGCGCTTGTATGTGTGTGTGCTGGGTGGCGGGGGGGGGGTGGGGGG
GTGGGTGGGGGCTGGAACAAACGGACTGGTTTTTTGGTCCCTGAGCAGCT
GTACCCGGGGCTCCGCAACTTGTGGGAGACGCCACCGCTGTACGTGGTGG
ACGACTTCTTCAGCGGCCCCGAATGTGACGCCCTGATAGCCCTGGCCGGG
AACTACATGATTGTTAGCCCTGTGGTCGGAGCGGGCGCGGGGGAGGTGAG
CGAGAGCAGGACTAGCAGCTCGTGCTTCCTGGCGAGGGAGGACCTTCCTA
CCGTGTGCCACAAAGTGATGACCCTGACGGGGAAGCCCATCGAGCACTTG
GAGCTCCCGCAGGTATGCAGGCGTGTGGTGGGGTCTCTTGCCTGATAGAC
ATCGACCACGCGGGAGGGCTGACCAATAACAGTAGGCGCGATGTGAGCCG
GTAAAAAAAGCGTTTTTTTGGAGGTGCATTGTAAGTAATTCCTCGTCCTT
CTCTCTACAACCTCCTTTCCAGGGCTGTGCGGATCTATAACTGTTGTCCG
ACCACAGCCGAAGGGTGTTACTGCTTTCCTTTGCTCTCTCCTCGTTATGG
CTTTCTTAACACCGTTGATGGATACCATGCAGCCCAGAGCCCATCAGGCA
CCAAACCACACACTGAAACAGATGGAAACAAGATGCCAAAGAACTCTTGC
ATCTCCATCATGACGTCATTTAAGTTAGCCTGACAACGCCAAATGATGGA
AACACCCCATCACACGGGTACCTCCGAATACTTTACCAAATGGGGAGATT
GATGATGATGCGCCTCAGTGATTTCAGACAAGACCGTAGGCCGTCTCATA
ATGCCCTTGCTGAGTGTGATTTTGCGGAGGGAACCATGTAGCATGCAGCC
ACTGGTGCTATGCTATGCCCGATGTCGTACTGTGTGGTATTGCGTAGGCC
ACTCTTTTTGCCGTGCTTTCGCGTCGGAGCCAGAAGTCGGCATGGTCTCG
ACCCCCCCAATCGGTCTGCGCGATGACCCGAACCGGCCTCAGGCATCACA
CGATTTTATTTTGTATCCAGTTCGATTTTTTTGGAACGCGTGCCTGGATC
GTGCCCCAGGCGATTTCGTGTCCTGTCCGCTCTGGCTTCGACGATGTCCA
GAAGGGAACCACCTTGTAGTTGGTCAATGCGTATGGTTCTTCCGCCCGCG
TGTGCATGGTGTACATCGTGCCCCACTAGAACATGGTATCGCAGCACCTT
GTCCAAATGTGTCGTGTTGTCTGTCGCATACCCGCCTTGGATGTGTGCTC
AAGTTCACTTTGAATCGCTTGTTACGCCCGGAAAACCACTTCAGTCCTCG
ACGCCTCTACAGACGTAGCGACGGTGTAGGTAGTGATTCCCATGTACAGG
ACATCTGTAGGTCTAGGTGGGTGTCGGGCGGGGCAGTTATACACCTCTCA
CCAGAAGTACCCCCGGCGAATGGGACACACATCGGTGACGTCATAACACC
GTTTCTCGCGCCTCCATGATTGTGCACACCGTTCAACGACGCTGCTGAAT
ATCTGAACTCAGGAGCAGCACCGAACACATTTATTTTTTCTTTCCAAGCA
GCAGCACCAAAAGAAAAACTTTTCTCCGCCACAGCAGCACCAAGAGCACG
CGTATCTCGTCGATAGGTGATTATCTCACGAAAGCCTTGTACAGCTACCT
ACCTGACTTGGAGATGGTCTGTGGCGAGGTAAGTTTACCCTTTGCTGAGT
GGATCAGCAATTTAGGGCATGATGAGGGGAACACTGCGCACAATTTTTTT
ATTGCTGCCCAGACGGAAATAACAAGAAGAGTGACGTACGAAACGACACA
ACGGTTGATTGTCGCAGGTGGGGCGCTACTATACCTCCCAGAAGTACGCT
AACCACTGGGACGCATTCGACCTCAACACAGAGGACGGTAGGCGTTTCGC
ACAGAACGGGGGGCAGCGCGTGTGCACCGTGCTGGTGTACCTCAACGATG
TTCCCTCCGGGGGGTGCACTGCTTTCCCTCAGCTGGGAATGAAGGTTCAG
CCAAAAAAAGGTACGTGGTATCACGCTGGGGTGGTCGGTGCTTCTTGGTT
GCATTGTTGGTCGCTATCCGGCGGGGGATATCGACAGAGACTAAAACCTA
TCTCGAGATCTCATTACGCCGCCGCCGCTGCTGCTGCTACCGCTGCTGGA
TGGACAAATGCACCCAAGAGATTGCCGAACGTAATTTCAGGCTAAAAGTG
GTGTACTTCTGTGGGGTGCAATTTCAAGTCGGCGTCTCCTCAAACCCTGG
GCCTCTTTGGGACACTATTAGCCACGTGCGCGCGCAATGGCACCCTCTGT
GTGGACCTCGTCCTGCCCGCCAAACTCGTCCTTGACTTCTAAACGTACCC
GCTTTGCGTCTCACTTGCATGCTCGTTGCGGTGGGGGGGACTTTAAGCAG
GCATGGCCGTAGTCTTCTTCCCGGCCACACTGGACGGAGCGCTGGACTCA
AGACTTCTGCACGCGGCCGAACCCGCCATAGACACGAAGTGGGTCTCCCA
GATCTGGATTCGGCAGGGGGCTTACCACGGCACGCCTACCGCGAGGATTC
CCGCCATTTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig984:3898..9608-

>mRNA_E_fasciculatus_S2_contig984.17845.1 ID=mRNA_E_fasciculatus_S2_contig984.17845.1|Name=mRNA_E_fasciculatus_S2_contig984.17845.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1686bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig984:3898..9608- (Ectocarpus fasciculatus EfasUO2)
ATGGGCGGGAGCAGCAGCGACAAAAGTGGCACGGCGAGCCACGCCGCCTT
GCAGCAGGTGGGCGTTTACAGCGGCAGCTACGCTGCCGTGCCAGGAGTGT
TTGGCGGGCAAACTTTGCAACATGGAGGAGGTTCAACTGCTAGCCAGCCT
TCCGATAGGCCACCAACCACGGCACCGACACAGCCACCACATGCAGCAAG
CAGCATCAACGGCACCGCGAACCACATGGTGCTGGATAACGCCCCATCTC
TTCACCATCCTCCTGCCCCCACCCCACCCTCATCCGGCGGCAGCCACCAC
CCCCCCCCCGCCCCCCCCCCCGCCCGGCAGGGGAGCGTAGCGGCCACAAG
CGCCTTGCAGTTCGCACAGCTAGGACAACAGCTGCTCCCGCAGCAGCAGC
TTCACGGATTTGGAGAGATCGGGTCGTCCGTTGCCCCAGCCGCTCTGGTT
CCACAGGCCCAACTGGCTGGCATATACCCTTCCGCTTCGCTCACAACAAC
GACCTCCGTCGACACGGCTGTAAGCACGCATGTAGTCGATGGTGGAGTTG
CTGGCGGGGGGGCGATGACATCAATGCTGCAACAGCAACCCCCTCCACCC
CTCAGCGATATCGGTGGCGCTGTAGTGCCCCTCCCCGCGGCAAACAGCGG
TCCCACATTCACCTTCAACGGCGGTGGCGGCGGAGGCGGCGGTGTTGAAC
CGCTGGCGGGGCCTGTCTTTCAGCCTGGATTCAACCCAACGGCACTGCAG
AACCAGCAGCAGCCGGCACCGGTATTCACGACCCCGTCGTCCACGCGCTT
CCCGCTGTCTGCCTTCGTTGGCGAGCAGCAACAACAGCAGAAGGTGGCAC
CGGTGTTCACGATCCCCCCATCAACTGGATTGGCCCCCTCGGCCTTTGGT
GGCGAGCAACAACAGCCAATGGTGATGCCAGTGCAACAGCAGCAGCAGCT
GCAGCAACAACAGCAGCATGAACAGCACCGGCAACTACAACCAGGAACGC
CTGCTGCGAGCATCACTGCAGCGTTCACGCCATTTCCCGCGCAGTCTTTC
TTGCAGCTTAATCCGCTGTACCCGGGGCTCCGCAACTTGTGGGAGACGCC
ACCGCTGTACGTGGTGGACGACTTCTTCAGCGGCCCCGAATGTGACGCCC
TGATAGCCCTGGCCGGGAACTACATGATTGTTAGCCCTGTGGTCGGAGCG
GGCGCGGGGGAGGTGAGCGAGAGCAGGACTAGCAGCTCGTGCTTCCTGGC
GAGGGAGGACCTTCCTACCGTGTGCCACAAAGTGATGACCCTGACGGGGA
AGCCCATCGAGCACTTGGAGCTCCCGCAGGTGGGGCGCTACTATACCTCC
CAGAAGTACGCTAACCACTGGGACGCATTCGACCTCAACACAGAGGACGG
TAGGCGTTTCGCACAGAACGGGGGGCAGCGCGTGTGCACCGTGCTGGTGT
ACCTCAACGATGTTCCCTCCGGGGGGTGCACTGCTTTCCCTCAGCTGGGA
ATGAAGGTTCAGCCAAAAAAAGCAGGCATGGCCGTAGTCTTCTTCCCGGC
CACACTGGACGGAGCGCTGGACTCAAGACTTCTGCACGCGGCCGAACCCG
CCATAGACACGAAGTGGGTCTCCCAGATCTGGATTCGGCAGGGGGCTTAC
CACGGCACGCCTACCGCGAGGATTCCCGCCATTTAG
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