prot_E_fasciculatus_S2_contig9835.17843.1 (polypeptide) Ectocarpus fasciculatus EfasUO2

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_E_fasciculatus_S2_contig9835.17843.1
Unique Nameprot_E_fasciculatus_S2_contig9835.17843.1
Typepolypeptide
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Sequence length74
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9835.17843.1 vs. uniprot
Match: A0A6H5KCY0_9PHAE (MMS19 nucleotide excision repair protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCY0_9PHAE)

HSP 1 Score: 122 bits (306), Expect = 9.430e-31
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 0 
Query:    7 GLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFGPPGVGVHLRAIGGAMSEE 71
            GLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFG PGVGVHLRAIGGAMSEE
Sbjct:  333 GLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFGAPGVGVHLRAIGGAMSEE 397
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BLAST of mRNA_E_fasciculatus_S2_contig9835.17843.1 vs. uniprot
Match: D8LJJ0_ECTSI (MMS19 nucleotide excision repair protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJJ0_ECTSI)

HSP 1 Score: 122 bits (306), Expect = 1.000e-30
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 0 
Query:    7 GLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFGPPGVGVHLRAIGGAMSEE 71
            GLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFG PGVGVHLRAIGGAMSEE
Sbjct:  287 GLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVRAFGAPGVGVHLRAIGGAMSEE 351
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9835.17843.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KCY0_9PHAE9.430e-3198.46MMS19 nucleotide excision repair protein (Fragment... [more]
D8LJJ0_ECTSI1.000e-3098.46MMS19 nucleotide excision repair protein n=1 Tax=E... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO2
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR029240MMS19, N-terminalPFAMPF14500MMS19_Ncoord: 7..72
e-value: 5.8E-13
score: 49.0

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9835contigE_fasciculatus_S2_contig9835:177..398 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Ectocarpus fasciculatus EfasUO22022-09-29
Diamond blastp: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-16
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9835.17843.1mRNA_E_fasciculatus_S2_contig9835.17843.1Ectocarpus fasciculatus EfasUO2mRNAE_fasciculatus_S2_contig9835 177..398 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_E_fasciculatus_S2_contig9835.17843.1 ID=prot_E_fasciculatus_S2_contig9835.17843.1|Name=mRNA_E_fasciculatus_S2_contig9835.17843.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=74bp
MLCFCIGLEGVLVGSPGMAPHVLPMLLDKLSSEVSTAKEASLKAMVAGVR
AFGPPGVGVHLRAIGGAMSEEVRR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR029240MMS19_N