mRNA_E_fasciculatus_S2_contig979.17791.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig979.17791.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0J1_9PHAE) HSP 1 Score: 359 bits (921), Expect = 1.810e-118 Identity = 230/313 (73.48%), Postives = 241/313 (77.00%), Query Frame = 1
Query: 76 YAHARSEDWLRDLTALLEQHPHALVGEIGLDKVARTPDTRRVEWDDQLEVFQTQMELAARMSRPVSVHCVKAHGKLVDFLRGFGRDGPATHKSSSSGSSSSGSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADKGRAQNXXXXXXXXXXXXXXXX------------GLMERKAGRPPAGGQKAKDDGMGGDRKRWRLPPRIALHSFTGSVEVTKDIARLGVRTGYGSEVFFGFSAAVNMRGDRETKRLADVLRVVPDSRVLIETDRRAPAREAAEELLRVCGAIAEAKGISIGEAAALANGNAARFLAKP 978
YAHARS++WLRDLTALLEQHPHALVG LDKVARTPDTRRVEWDDQ MELAARMSRPVSVHCVKAHGKLVD LRG G DGPATH S XXXXXXXXXXXXXXXXXXXX ADKGRAQ+ XXXXX GL+ERK G PPAGGQK +G+GG+RKRWRLPPRIALHSFTGSVEV KDI RLG R GYGSEVFFGFSAAVNMRGDRETKRL DVL+VVPDSR+LIETDRRAPAREA EELLRVC AIAEAKG+S EAAALA+GNAARFLA P
Sbjct: 69 YAHARSKEWLRDLTALLEQHPHALVG---LDKVARTPDTRRVEWDDQ-------MELAARMSRPVSVHCVKAHGKLVDCLRGSGLDGPATHNS-------------------XXXXXXXXXXXXXXXXXXXXXADKGRAQSGVEGXXXXXSVLAEGGIGGDFCRGGGGDGLIERKTGCPPAGGQKEGHNGLGGERKRWRLPPRIALHSFTGSVEVAKDITRLGARRGYGSEVFFGFSAAVNMRGDRETKRLVDVLKVVPDSRILIETDRRAPAREAVEELLRVCDAIAEAKGVSAEEAAALASGNAARFLAMP 352
BLAST of mRNA_E_fasciculatus_S2_contig979.17791.1 vs.
Match: Cut9 (interacting protein Scn1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRA6_ECTSI) HSP 1 Score: 288 bits (737), Expect = 5.840e-93 Identity = 162/264 (61.36%), Postives = 169/264 (64.02%), Query Frame = 1
Query: 1 MSSLNEGRRDHDFNGNGTAIIHVHLYAHARSEDWLRDLTALLEQHPHALVGEIGLDKVARTPDTRRVEWDDQLEVFQTQMELAARMSRPVSVHCVKAHGKLVDFLRGFGRDGPATHKSSSSGSSSSGSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADKGRAQNXXXXXXXXXXXXXXXXGLMERKAGRPPAGGQKAKDDGMGGDRKRWRLPPRIALHSFTGSVEVTKDIARLGVRTGYGSEVFFGFSAAVNMRGDRETKRL 792
MSSLNE RRDH N +GTA I + YAHARSE+WLRDLTALLEQHPHALVGEIGLDKVARTPDTRRVEWDDQLEVFQ QMELAARMSRPVSVHCVKAHGKLVD+LRG LMERK GR PAGGQK + +GMGG+ KRWRLPPRIALHSFTGSVEV KDI RLG R YGSEVFFGFSAAVNMRGDRETKRL
Sbjct: 1 MSSLNERRRDHAENVSGTATICMR-YAHARSEEWLRDLTALLEQHPHALVGEIGLDKVARTPDTRRVEWDDQLEVFQAQMELAARMSRPVSVHCVKAHGKLVDYLRG----------------------------------------------------------------------------LMERKTGRSPAGGQKEEYNGMGGEGKRWRLPPRIALHSFTGSVEVAKDITRLGARRDYGSEVFFGFSAAVNMRGDRETKRL 187
BLAST of mRNA_E_fasciculatus_S2_contig979.17791.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Noctiluca scintillans TaxID=2966 RepID=A0A7S1AAK2_NOCSC) HSP 1 Score: 103 bits (258), Expect = 4.390e-23 Identity = 48/80 (60.00%), Postives = 61/80 (76.25%), Query Frame = 1
Query: 76 YAHARSEDWLRDLTALLEQHPHALVGEIGLDKVARTPDTRRVEWDDQLEVFQTQMELAARMSRPVSVHCVKAHGKLVDFL 315
YAHA +E WL L ALLE HPHALVGE+GLDK+ RT +TR+ E+ Q VFQ Q++LAA + RPVSVHCV++ GK+ + L
Sbjct: 24 YAHAVTEGWLERLRALLEHHPHALVGEVGLDKIFRTKETRKCEYQAQQVVFQAQLKLAADLCRPVSVHCVQSWGKMAEIL 103
BLAST of mRNA_E_fasciculatus_S2_contig979.17791.1 vs.
Match: TatDrelated (DNase, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GPB7_ACACA) HSP 1 Score: 102 bits (253), Expect = 3.880e-21 Identity = 85/286 (29.72%), Postives = 115/286 (40.21%), Query Frame = 1
Query: 55 AIIHVHLY-AHARSEDWLRDLTALLEQHPHALVGEIGLDKVARTPDTRRVEWDDQLEVFQTQMELAARMSRPVSVHCVKAHGKLVDFLRGFGRDGPATHKSSSSGSSSSGSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADKGRAQNXXXXXXXXXXXXXXXXGLMERKAGRPPAGGQKAKDDGMGGDRKRWRLPPRIALHSFTGSVEVTKDIARLGVRTGYGSE-VFFGFSAAVNMRGDRETKRLADVLRVVPDSRVLIETDRRAPAREAAEELLRVCGAIAE 906
A VH Y AH +E WL +L L +P A+VGEIGLDK A TPDT R E+D Q F Q +LA + RP+S HCV+A G ++ R LM G++ D+ R LPP I +HSF G+V + + R G E ++F FS VNMR + DV++ VP+ R+LIE+D+ +PA E+L RVC +AE
Sbjct: 34 AAFGVHPYFAHRLAEGWLEELREKLVANPRAIVGEIGLDKAAITPDTARNEYDAQTTAFTAQFDLAVELQRPISFHCVRAFGHVMTLFR---------------------------------------------------------------------QHALRYDQLMRS--------GEE--------DKARGTLPPAIIMHSFAGTVGGMESLLSNKGRKGNIQERLYFSFSKIVNMRAPKTI----DVIKAVPEDRLLIESDQHSPAH-GEEDLSRVCEIVAE 229
BLAST of mRNA_E_fasciculatus_S2_contig979.17791.1 vs.
Match: Cut9 (interacting protein Scn1, putative n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HCX4_ACACA) HSP 1 Score: 99.8 bits (247), Expect = 1.570e-19 Identity = 48/89 (53.93%), Postives = 61/89 (68.54%), Query Frame = 1
Query: 55 AIIHVH-LYAHARSEDWLRDLTALLEQHPHALVGEIGLDKVARTPDTRRVEWDDQLEVFQTQMELAARMSRPVSVHCVKAHGKLVDFLR 318
A VH YAH R DWL +L ALL ++P A+VGEIGLD+ A TPDT R E QLEVF+ Q LA R+ RPVS+HCV+A G+ + ++
Sbjct: 74 AAFAVHPWYAHRRGSDWLEELEALLRRNPAAIVGEIGLDRAATTPDTGRCEHQHQLEVFEKQFRLAGRLQRPVSIHCVRAFGQFFEAVQ 162
BLAST of mRNA_E_fasciculatus_S2_contig979.17791.1 vs.
Match: Uncharacterized (protein n=1 Tax=Volvox africanus TaxID=51714 RepID=A0A8J4ARR6_9CHLO) HSP 1 Score: 97.4 bits (241), Expect = 1.510e-18 Identity = 79/292 (27.05%), Postives = 115/292 (39.38%), Query Frame = 1
Query: 94 EDWLRDLTALLEQHPHALVGEIGLDKVARTPDTR-RVEWDDQLEVFQTQMELAARMSRPVSVHCVKAHGKLVDFLRGFGRDGPATHKSSSSGSSSSGSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADKGRAQNXXXXXXXXXXXXXXXXGLMERKAGRPPAGGQKAKDDGMGGDRKRWRLPPRIALHSFTGSVEVTKDIARLGVRTGYGSEVFFGFSAAVNMRGDRETKRLADVLRVVPDSRVLIETDRRAPAREAAEELLRVCGAIAEAKGISIGEAAALANGNAARF 966
E W+ L +LL HPHA+VGE GLD+ A P TR + W QL + + + LA+ + RP S+HCV+ +G L D LR G +G PPRI LHS+ GSV++ K +L G G+ ++F FS+ +N R +L + LR VP R+L+E+D+ +P+ L + A+AEA+GI+I +AAA N F
Sbjct: 172 ERWMPRLRSLLTDHPHAVVGEFGLDRAAVVPGTRLQPAWSHQLALTEMHLRLASELGRPASLHCVQGYGALQDMLRTLGPEG----------------------------------------------------------------------------------------------------CPPRIMLHSYGGSVDLIKGFTKLP--KGVGNRIYFSFSSVIN---GRARDKLLERLRAVPLERLLVESDQNSPSG-VDPGLRAILEAVAEARGITIEDAAAATTNNFLEF 357
BLAST of mRNA_E_fasciculatus_S2_contig979.17791.1 vs.
Match: Uncharacterized (protein n=1 Tax=Powellomyces hirtus TaxID=109895 RepID=A0A507DYG5_9FUNG) HSP 1 Score: 95.5 bits (236), Expect = 3.910e-18 Identity = 84/287 (29.27%), Postives = 114/287 (39.72%), Query Frame = 1
Query: 112 LTALLEQHPHALVGEIGLDKVARTPDTRRV-EWDDQLEVFQTQMELAARMSRPVSVHCVKAHGKLVDFLRGFGRDGPATHKSSSSGSSSSGSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADKGRAQNXXXXXXXXXXXXXXXXGLMERKAGRPPAGGQKAKDDGMGGDRKRWRLPPRIALHSFTGSVEVTKDIARLGVRTGYGSEVFFGFSAAVNMRGDRETKRLADVLRVVPDSRVLIETDRRAPAREAAEELLRVCGAIAEAKGISIGEAAALANGNAARFL 969
L +L HP ALVGEIG+D VA+ T + +D QL VF+ Q+ LA RM RPVSVH V+AHG LVD +R G+ Q G + + +PP I HS++GS E + A + + G G+ +F FS VN R + T D +R VPD R+LIE+D A++ + C +AEAKG ++ E A NA RFL
Sbjct: 95 LERILASHPGALVGEIGIDSVAKDRTTGELYPFDQQLAVFRAQLALAGRMGRPVSVHTVRAHGCLVDVMREMA----------------------------------------------------GKRQKKRNWKKERELDRFYTQGDSDXXXXXXXXXXXXXXXXXXXXVSRGASIPPAIMHHSYSGSTETIR--ALVSLPNGMGARFYFSFSTGVNGRSPKTT----DHIRAVPDDRILIESDLH-DAQQIDAAVNDACRMVAEAKGWTMKETAERTRRNAERFL 322
BLAST of mRNA_E_fasciculatus_S2_contig979.17791.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XY07_9STRA) HSP 1 Score: 92.0 bits (227), Expect = 1.430e-17 Identity = 43/80 (53.75%), Postives = 54/80 (67.50%), Query Frame = 1
Query: 76 YAHARSEDWLRDLTALLEQHPHALVGEIGLDKVARTPDTRRVEWDDQLEVFQTQMELAARMSRPVSVHCVKAHGKLVDFL 315
+AH W+ L L HP AL+GEIGLDK ARTP+TRR E++ Q EVF Q+ LAA + RPVSVHCV++ GKL +
Sbjct: 49 FAHRAENGWIERLRLRLASHPAALLGEIGLDKAARTPETRRCEYEAQQEVFAAQLALAAELRRPVSVHCVRSVGKLFGMM 128
BLAST of mRNA_E_fasciculatus_S2_contig979.17791.1 vs.
Match: Uncharacterized (protein n=3 Tax=Volvox reticuliferus TaxID=1737510 RepID=A0A8J4G6C9_9CHLO) HSP 1 Score: 94.0 bits (232), Expect = 2.450e-17 Identity = 77/292 (26.37%), Postives = 113/292 (38.70%), Query Frame = 1
Query: 94 EDWLRDLTALLEQHPHALVGEIGLDKVARTPDTR-RVEWDDQLEVFQTQMELAARMSRPVSVHCVKAHGKLVDFLRGFGRDGPATHKSSSSGSSSSGSKXXXXXXXXXXXXXXXXXXXXXXXXXXXXGADKGRAQNXXXXXXXXXXXXXXXXGLMERKAGRPPAGGQKAKDDGMGGDRKRWRLPPRIALHSFTGSVEVTKDIARLGVRTGYGSEVFFGFSAAVNMRGDRETKRLADVLRVVPDSRVLIETDRRAPAREAAEELLRVCGAIAEAKGISIGEAAALANGNAARF 966
E W+ L +LL HPHA+VGE GLD+ A P TR + W QL + + + LA+ + RP S+HCV+ +G L D LR G +G PP+I LHS+ GSV++ + +L G G ++F FS+ +N R +L + LR VP R+L+E+D+ +PA L + A+AEA+GI++ EAA N F
Sbjct: 170 ERWMPRLQSLLTAHPHAVVGEFGLDRAAVVPGTRLQPAWAHQLALTEMHLRLASELGRPASLHCVQGYGALQDMLRTLGPEG----------------------------------------------------------------------------------------------------CPPKIMLHSYGGSVDLIRGFTKLP--KGVGDRIYFSFSSVIN---GRARDKLLERLRAVPLERLLVESDQNSPAG-VDPGLRAILEAVAEARGITVEEAAVATTNNFREF 355
BLAST of mRNA_E_fasciculatus_S2_contig979.17791.1 vs.
Match: RING-CH-type (domain-containing protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1K457_GUITC) HSP 1 Score: 90.5 bits (223), Expect = 9.090e-16 Identity = 45/82 (54.88%), Postives = 56/82 (68.29%), Query Frame = 1
Query: 76 YAHAR-SEDWLRDLTALLEQHPHALVGEIGLDKVARTPDTRRVEWDDQLEVFQTQMELAARMSRPVSVHCVKAHGKLVDFLR 318
+AH R EDW ++L LL QHP A VGEIGLD P V+++ Q EVFQ Q+E+A MSRPVS+HCVKA+G + D LR
Sbjct: 373 WAHERVEEDWKQELRRLLHQHPSACVGEIGLDGQWIPPGLDSVQYEKQKEVFQAQLEIATEMSRPVSLHCVKAYGDMFDMLR 454 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig979.17791.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig979.17791.1 >prot_E_fasciculatus_S2_contig979.17791.1 ID=prot_E_fasciculatus_S2_contig979.17791.1|Name=mRNA_E_fasciculatus_S2_contig979.17791.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=327bp MSSLNEGRRDHDFNGNGTAIIHVHLYAHARSEDWLRDLTALLEQHPHALVback to top mRNA from alignment at E_fasciculatus_S2_contig979:15127..18862- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig979.17791.1 ID=mRNA_E_fasciculatus_S2_contig979.17791.1|Name=mRNA_E_fasciculatus_S2_contig979.17791.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3736bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig979:15127..18862- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig979:15127..18862- >mRNA_E_fasciculatus_S2_contig979.17791.1 ID=mRNA_E_fasciculatus_S2_contig979.17791.1|Name=mRNA_E_fasciculatus_S2_contig979.17791.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=981bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig979:15127..18862- (Ectocarpus fasciculatus EfasUO2)back to top |