mRNA_E_fasciculatus_S2_contig9756.17751.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9756.17751.1
Unique NamemRNA_E_fasciculatus_S2_contig9756.17751.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9756.17751.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHY6_ECTSI)

HSP 1 Score: 96.7 bits (239), Expect = 1.910e-20
Identity = 53/75 (70.67%), Postives = 58/75 (77.33%), Query Frame = 3 
Query:  513 FNGRDSDNLRSVVXXXXXRDFTAPVAKLTEKL--NNAHRGQGQRHQRRQYFRKGRKMRHDDCALCAGRREQRRID 731
            F G  S NLRSVV     RDFTAPVAKLTEKL  NN+ RG G+R QRRQ+FR+ RKM HD CALCAGRRE+RRID
Sbjct:   35 FTGGGSANLRSVVWPASLRDFTAPVAKLTEKLACNNSRRGYGRRRQRRQHFRRMRKMHHDACALCAGRREKRRID 109
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9756.17751.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.910e-2070.67protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9756contigE_fasciculatus_S2_contig9756:3040..5173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1588
Hectar predicted targeting categoryother localisation
Exons2
Cds size810
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842619.238834-UTR-E_fasciculatus_S2_contig9756:3039..31431696842619.238834-UTR-E_fasciculatus_S2_contig9756:3039..3143Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9756 3040..3143 +
1696842619.2718885-UTR-E_fasciculatus_S2_contig9756:4499..51731696842619.2718885-UTR-E_fasciculatus_S2_contig9756:4499..5173Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9756 4500..5173 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842619.248634-CDS-E_fasciculatus_S2_contig9756:3143..33431696842619.248634-CDS-E_fasciculatus_S2_contig9756:3143..3343Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9756 3144..3343 +
1696842619.2584364-CDS-E_fasciculatus_S2_contig9756:3889..44991696842619.2584364-CDS-E_fasciculatus_S2_contig9756:3889..4499Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9756 3890..4499 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9756.17751.1prot_E_fasciculatus_S2_contig9756.17751.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9756 3144..4499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9756.17751.1

>prot_E_fasciculatus_S2_contig9756.17751.1 ID=prot_E_fasciculatus_S2_contig9756.17751.1|Name=mRNA_E_fasciculatus_S2_contig9756.17751.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=270bp
MPLQDMVFPDTLQEIVLGGEFDQPIEGYKWPASLQHLTLGGCFNRSIAGV
QWPPGLRALKLSLDFNQPLDGVVWPNALRELHFLTGEFGEGYFDQPIDVI
PLPRTLEVLKFGSEFNQSIDNIEWPAALREIVVGHDFNGRDSDNLRSVVW
PASLRDFTAPVAKLTEKLNNAHRGQGQRHQRRQYFRKGRKMRHDDCALCA
GRREQRRIDDFRQLGWVPKDCRIHDAYSPLQREDGLGYYDDSCTENENTD
EEEREMREVMKRYCWDWGY*
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mRNA from alignment at E_fasciculatus_S2_contig9756:3040..5173+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9756.17751.1 ID=mRNA_E_fasciculatus_S2_contig9756.17751.1|Name=mRNA_E_fasciculatus_S2_contig9756.17751.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2134bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9756:3040..5173+ (Ectocarpus fasciculatus EfasUO2)
CGACGATCAAGAGATCCAAGGTGCTCAAATTGATTCCTTCGCTGAAGGGT
GTCGTCTGGCCGGAGAATCTTCTCGTACTGGAGCTGCTCGAAAATTTTTT
CAACATGCCGCTGCAGGACATGGTTTTCCCCGATACTTTACAAGAGATCG
TTCTGGGGGGTGAATTTGATCAGCCTATCGAGGGATACAAGTGGCCAGCA
TCACTGCAACACCTCACTCTCGGAGGGTGCTTCAACCGGTCTATCGCGGG
GGTCCAGTGGCCGCCGGGCCTTCGAGCCTTGAAGCTCAGCCTAGACTTCA
ACCAGTGAGTGGATAGACCTAGCTGCAGTCATTGGTGACAATGCGGTCGT
AATGGTGCAAGTCAGTACATCGTGCATGTGAATGAAATTTGGCTAGAGGA
GCAATCGTTGGATTTGCGAAACCGGTTCTTCTTCGAATTGTTCTTTCTAA
TGTAGTTTGGCGGCATATAAAAAACTCGTATCAAGTAGGTCGGTGCCGTG
CCAGTGGTAGAGACACGCTTACACGCTGTACCGGTATGCAGTACAACATA
GTGTCCTCCTTTTTCCAGCCATCGTCAGCTCATCCTTGGCATGCTACCGC
CTTGCCTCCCCCACACCTTTCGCTCCTCTCCGCGTACGAGACTGTCCAGC
GTCTACGAAAGAACAAGCACCTTGGTGGAAATTGGTTCCCACCATCCTCT
TGTTGAAACTTTTTCCATGCGAGGTTTCGAAAGTCTTGCATGCCGCCGCG
GTACGAAATAAAATGCTTACTACTGCTCTTTGATGCTCCCGTTTCTGCCG
CCTTTGGATTTCTCCCCCCCCTTCTCCTCCTCTCTGATTGTCTCACACAG
ACCCCTGGATGGCGTTGTGTGGCCGAACGCGCTACGAGAGTTACACTTTC
TCACTGGTGAGTTTGGAGAGGGCTATTTCGACCAGCCAATCGATGTCATT
CCCCTACCAAGAACCTTGGAAGTGCTCAAGTTTGGAAGTGAGTTCAACCA
GAGCATCGACAACATCGAGTGGCCTGCAGCCTTGAGAGAGATCGTGGTAG
GACATGACTTCAACGGCAGAGATAGTGACAATCTGAGGAGCGTGGTTTGG
CCGGCGAGCTTGCGGGATTTTACCGCGCCTGTCGCTAAGTTGACCGAGAA
GCTAAACAACGCACACCGCGGGCAGGGTCAACGCCATCAACGGCGTCAAT
ATTTCCGGAAGGGGCGGAAGATGCGGCACGACGACTGCGCCCTTTGTGCA
GGAAGGCGTGAGCAGAGGCGGATCGACGATTTCCGACAGTTAGGCTGGGT
CCCGAAGGATTGCCGCATCCATGACGCCTACTCCCCCCTACAACGAGAGG
ACGGGCTGGGCTACTACGACGACTCGTGCACCGAGAATGAGAATACAGAT
GAGGAAGAGAGGGAGATGCGCGAAGTCATGAAGAGATACTGCTGGGATTG
GGGCTACTGAGCCATCAGGGACACTTGCCAGCTAAAACGTGTATTGACGT
GGTACGGCGGTTAGGACTGCCTATCTACAGGAAACACGTCCAAGTAACGG
TTTGGGGAGGAAGTCATTCATCTCTCATCTACGGGAGTTAGTTGGGAGCA
CCTTCAGTTTGTTGCGGAAGTTACTAGGAGCTGCATCATCTACGAGGGTT
GAGGCCTCGCTCGGGTAGCAATGCGTGGCTCCCAAGGGCAGGAGTTTCTA
TAGATTGGTGGTAGTCCGGACGTCCGCGTGCACGTACGTAGTGTCTTTAG
TCTAGTTGTTCACGTGGGTCCTACTCTTGTTCTTCTGCTAATTAATTACG
TTAGACTAGACGAGAGAGACTACATAGTTCACAAAGTTTGTTGCGCATGT
ATGTTGTTCGTAGTTCTTGGCGAGTATCTGAAGGAGCTGCTACGACTGCT
GTAGTACATAGTGGTGGCGGTTGTGTGTGAGCTGGCGCGCTGCTGCCCCC
GCTGCTCCAGCGCATGTATGTATGTATGGTTGGTTCTCTGCGGGCCGTTA
CAGTTCGCTGGATGGCTGTATGATGAGTCATGATGTAATAATAATAGGTC
GATGTATAGTCTACATTCGACTCTTTCGTTTGGAAGCCAGCCGAGAGCAA
CATGAATTGAGGTGTGTTGTTGATGCTGCTGCTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9756:3040..5173+

>mRNA_E_fasciculatus_S2_contig9756.17751.1 ID=mRNA_E_fasciculatus_S2_contig9756.17751.1|Name=mRNA_E_fasciculatus_S2_contig9756.17751.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=810bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9756:3040..5173+ (Ectocarpus fasciculatus EfasUO2)
ATGCCGCTGCAGGACATGGTTTTCCCCGATACTTTACAAGAGATCGTTCT
GGGGGGTGAATTTGATCAGCCTATCGAGGGATACAAGTGGCCAGCATCAC
TGCAACACCTCACTCTCGGAGGGTGCTTCAACCGGTCTATCGCGGGGGTC
CAGTGGCCGCCGGGCCTTCGAGCCTTGAAGCTCAGCCTAGACTTCAACCA
ACCCCTGGATGGCGTTGTGTGGCCGAACGCGCTACGAGAGTTACACTTTC
TCACTGGTGAGTTTGGAGAGGGCTATTTCGACCAGCCAATCGATGTCATT
CCCCTACCAAGAACCTTGGAAGTGCTCAAGTTTGGAAGTGAGTTCAACCA
GAGCATCGACAACATCGAGTGGCCTGCAGCCTTGAGAGAGATCGTGGTAG
GACATGACTTCAACGGCAGAGATAGTGACAATCTGAGGAGCGTGGTTTGG
CCGGCGAGCTTGCGGGATTTTACCGCGCCTGTCGCTAAGTTGACCGAGAA
GCTAAACAACGCACACCGCGGGCAGGGTCAACGCCATCAACGGCGTCAAT
ATTTCCGGAAGGGGCGGAAGATGCGGCACGACGACTGCGCCCTTTGTGCA
GGAAGGCGTGAGCAGAGGCGGATCGACGATTTCCGACAGTTAGGCTGGGT
CCCGAAGGATTGCCGCATCCATGACGCCTACTCCCCCCTACAACGAGAGG
ACGGGCTGGGCTACTACGACGACTCGTGCACCGAGAATGAGAATACAGAT
GAGGAAGAGAGGGAGATGCGCGAAGTCATGAAGAGATACTGCTGGGATTG
GGGCTACTGA
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