mRNA_E_fasciculatus_S2_contig9753.17748.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9753.17748.1
Unique NamemRNA_E_fasciculatus_S2_contig9753.17748.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9753.17748.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9753contigE_fasciculatus_S2_contig9753:2384..4004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size297
Hectar predicted targeting categoryother localisation
Exons2
Cds size294
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842618.9976811-CDS-E_fasciculatus_S2_contig9753:2384..26131696842618.9976811-CDS-E_fasciculatus_S2_contig9753:2384..2613Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9753 2385..2613 -
1696842619.0079958-CDS-E_fasciculatus_S2_contig9753:3939..40041696842619.0079958-CDS-E_fasciculatus_S2_contig9753:3939..4004Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9753 3940..4004 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9753.17748.1prot_E_fasciculatus_S2_contig9753.17748.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9753 2385..4004 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9753.17748.1

>prot_E_fasciculatus_S2_contig9753.17748.1 ID=prot_E_fasciculatus_S2_contig9753.17748.1|Name=mRNA_E_fasciculatus_S2_contig9753.17748.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=98bp
AIASVRVGKRAREGERERGVASRLVVVVQARGHRGELEEAKRQQQQHRQR
RREARQLFLPKPGVQRRKEGSGWSASGSRKHSNTRKNTKRGEKQNSCR
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mRNA from alignment at E_fasciculatus_S2_contig9753:2384..4004-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9753.17748.1 ID=mRNA_E_fasciculatus_S2_contig9753.17748.1|Name=mRNA_E_fasciculatus_S2_contig9753.17748.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1621bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9753:2384..4004- (Ectocarpus fasciculatus EfasUO2)
GCTATAGCCTCCGTGCGTGTGGGCAAGAGAGCAAGAGAGGGAGAGAGAGA
GAGAGGTGTAGCCAGGTGCGAATACGTCGTATGATGATAAAAAAGATGAC
TGGTTGCACTGATTCAGGGGATGCAGGGCGCCCGGTGTATTTTGCAAAGG
TCCACTTCCGTTTTTGATTGGAACACGCAAAATCTCTGTGTTGTGTGCGT
GGCGTGCGCGTACGGGCGGCGGCCAGCGGTTGTTGCGCGACGAGCAGCAG
AACAAACGGCCCCTTCACACCCCTACCTGCTTTGCCAAACCGTCGGGAGA
TCAAGGCGAGCCGTTCGAACACACCGGGGATTGTTGGCAGTAACGACAGG
TTTGCATTGTGATTCGCACAACACATTTTAACCCTCCGCGACCGCAAAAT
AATTATGCAGGCGATGTATTACCTGCAGTGTTTTTGTGTTGTTTTGTTGT
TGTTGTTTCTCACATTAGCTCTGAAAAAAGAAAGATGGGGAGCCCGTGGT
CTCAAAACCCGGCATACACGACCCCACGAAGAAACAGAAAAAAAACGTGT
GAAGTGTGAAGGCTGTGTGCGGAGAGTTGTCCTNNNNNNNNNNCAACACA
TTTTAACCCTCCGCGACCGCAAAATAATTATGCAGGCGATGTATTACCTG
CAGTGTTTTTGTGTGTGAAGTGTGAAGGCTGTGTGCGGAGAGTTGTCCTT
GATGCCCTCACTGTGGAAACGACGCTGCAGCATCAGCTACGCCCTCAAGT
CGCAATGCTTCCTTTTCCGTGGAAAGCAGGATTGTGCTCTCCCCCCATCC
CCACACCGCCTTTGCCGTCAGGGGTGCCACCACCACCACCAGCGGTGGAA
CTTCTTTCCACAACGCTACATATGCATACAATACTACAGCCTCCTCAACG
CTATGCATACAATACTAGTACATAGTACCGCCGCAGTATGCACAACATTA
CATATTAATAGTAAAGGTCGCTTCAGAAACCACCTGATACCCGCTGTGAA
CCGAGTTTAACCCTGGGTCACAAATTGACGGTGCCGAGGATGGCTGCGTT
ATAACCGTCCCGTGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGCTCCAGCAACGCACCATTTGATTTCGGCATCCTTCTCCTGTCGTCGT
GGAGTATTATACATGAGCAGCTGTAGTCGAGCTTTGCAGAATCTGTCCAG
GGGGGGGGGTGGTATCTTCCGCAACTTACGGACGGTGCAATAACTAAGTG
CTGTTCCATCGCGTGGGTGGACGTCTCATGTGTCAACATCTCAAAACCCT
CGCCCGCCCCCTCGCGCTCTCTTTTTCCACGCCAACCGCTCGGTCTTCCG
CTGGCGGTCAAAAACGATCGCACGCGTTGCACCTGATGTAGTCGGCTCGT
CGTGGTCGTTCAAGCCCGGGGTCATAGAGGAGAGCTCGAAGAAGCCAAAA
GGCAGCAGCAGCAGCATCGCCAACGCCGCAGGGAGGCTAGACAGCTTTTC
TTACCAAAGCCGGGCGTCCAGCGAAGGAAGGAAGGAAGTGGGTGGAGCGC
AAGCGGCAGCCGCAAACACAGCAACACGAGAAAAAACACCAAGCGGGGAG
AGAAACAAAACAGTTGTCGAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9753:2384..4004-

>mRNA_E_fasciculatus_S2_contig9753.17748.1 ID=mRNA_E_fasciculatus_S2_contig9753.17748.1|Name=mRNA_E_fasciculatus_S2_contig9753.17748.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=294bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9753:2384..4004- (Ectocarpus fasciculatus EfasUO2)
GCTATAGCCTCCGTGCGTGTGGGCAAGAGAGCAAGAGAGGGAGAGAGAGA
GAGAGGTGTAGCCAGTCGGCTCGTCGTGGTCGTTCAAGCCCGGGGTCATA
GAGGAGAGCTCGAAGAAGCCAAAAGGCAGCAGCAGCAGCATCGCCAACGC
CGCAGGGAGGCTAGACAGCTTTTCTTACCAAAGCCGGGCGTCCAGCGAAG
GAAGGAAGGAAGTGGGTGGAGCGCAAGCGGCAGCCGCAAACACAGCAACA
CGAGAAAAAACACCAAGCGGGGAGAGAAACAAAACAGTTGTCGA
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