mRNA_E_fasciculatus_S2_contig9745.17743.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9745.17743.1
Unique NamemRNA_E_fasciculatus_S2_contig9745.17743.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9745.17743.1 vs.
Match: Dynein (light chain n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI79_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.310e-25
Identity = 44/45 (97.78%), Postives = 45/45 (100.00%), Query Frame = 3 
Query:    6 HCRLHQEGVRQEVQRNLALHCGPQLWVLRYPRNEALHLLLLGPGK 140
            HCRLHQEGVRQEVQRNLALHCGPQLWVLRYPR+EALHLLLLGPGK
Sbjct:   39 HCRLHQEGVRQEVQRNLALHCGPQLWVLRYPRDEALHLLLLGPGK 83
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BLAST of mRNA_E_fasciculatus_S2_contig9745.17743.1 vs.
Match: Dynein (light chain n=2 Tax=Stramenopiles TaxID=33634 RepID=D7FVR3_ECTSI)

HSP 1 Score: 97.8 bits (242), Expect = 1.380e-25
Identity = 44/47 (93.62%), Postives = 46/47 (97.87%), Query Frame = 1 
Query:    1 QDIAAFIKKEFDKKYSATWHCIVGRNFGSYVTHETKHFIYFYLGQAS 141
            +DIAAFIKKEFDKKYSATWHCIVGRNFGSYVTHETKHFIYFYLGQ +
Sbjct:   36 KDIAAFIKKEFDKKYSATWHCIVGRNFGSYVTHETKHFIYFYLGQVA 82
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9745.17743.1 vs.
Match: Dynein (light chain n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KQE3_STIJA)

HSP 1 Score: 95.9 bits (237), Expect = 7.970e-25
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:    1 QDIAAFIKKEFDKKYSATWHCIVGRNFGSYVTHETKHFIYFYLGQAS 141
            +DIAAFIKKEFDKKYS TWHCIVGRNFGSYVTHETKHFIYFYLGQ +
Sbjct:   36 KDIAAFIKKEFDKKYSPTWHCIVGRNFGSYVTHETKHFIYFYLGQVA 82
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9745.17743.1 vs.
Match: dynein (light chain 2, cytoplasmic n=2 Tax=Protostomia TaxID=33317 RepID=UPI0002657BB7)

HSP 1 Score: 95.9 bits (237), Expect = 7.970e-25
Identity = 43/47 (91.49%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:    1 QDIAAFIKKEFDKKYSATWHCIVGRNFGSYVTHETKHFIYFYLGQAS 141
            +DIAAFIKKEFDKKYS TWHCIVGRNFGSYVTHETKHFIYFYLGQ +
Sbjct:   36 KDIAAFIKKEFDKKYSPTWHCIVGRNFGSYVTHETKHFIYFYLGQVA 82
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9745.17743.1 vs.
Match: Dynein (light chain n=1 Tax=Hypsibius dujardini TaxID=232323 RepID=A0A1W0WKT2_HYPDU)

HSP 1 Score: 94.7 bits (234), Expect = 1.640e-24
Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:    1 QDIAAFIKKEFDKKYSATWHCIVGRNFGSYVTHETKHFIYFYLGQAS 141
            +DIAAFIKKEFDKKY+ TWHCIVGRNFGSYVTHETKHFIYFYLGQ +
Sbjct:   24 KDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVA 70
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BLAST of mRNA_E_fasciculatus_S2_contig9745.17743.1 vs.
Match: Dynein (light chain n=2 Tax=Myripristis murdjan TaxID=586833 RepID=A0A667XYR1_9TELE)

HSP 1 Score: 94.7 bits (234), Expect = 2.160e-24
Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:    1 QDIAAFIKKEFDKKYSATWHCIVGRNFGSYVTHETKHFIYFYLGQAS 141
            +DIAAFIKKEFDKKY+ TWHCIVGRNFGSYVTHETKHFIYFYLGQ +
Sbjct:   34 KDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVA 80
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9745.17743.1 vs.
Match: Dynein (light chain n=26 Tax=Oomycota TaxID=4762 RepID=W4HCB9_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 2.290e-24
Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:    1 QDIAAFIKKEFDKKYSATWHCIVGRNFGSYVTHETKHFIYFYLGQAS 141
            +DIAAFIKKEFDKKY+ TWHCIVGRNFGSYVTHETKHFIYFYLGQ +
Sbjct:   36 KDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVA 82
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9745.17743.1 vs.
Match: Dynein (light chain n=7 Tax=Clupeocephala TaxID=186625 RepID=H2S8S8_TAKRU)

HSP 1 Score: 94.7 bits (234), Expect = 2.290e-24
Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:    1 QDIAAFIKKEFDKKYSATWHCIVGRNFGSYVTHETKHFIYFYLGQAS 141
            +DIAAFIKKEFDKKY+ TWHCIVGRNFGSYVTHETKHFIYFYLGQ +
Sbjct:   36 KDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVA 82
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9745.17743.1 vs.
Match: Dynein (light chain n=2 Tax=Micromonas pusilla TaxID=38833 RepID=C1ML17_MICPC)

HSP 1 Score: 94.7 bits (234), Expect = 2.290e-24
Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:    1 QDIAAFIKKEFDKKYSATWHCIVGRNFGSYVTHETKHFIYFYLGQAS 141
            +DIAAFIKKEFDKKY+ TWHCIVGRNFGSYVTHETKHFIYFYLGQ +
Sbjct:   36 KDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVA 82
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9745.17743.1 vs.
Match: Dynein (light chain n=4 Tax=Branchiostoma TaxID=7737 RepID=C3XVM4_BRAFL)

HSP 1 Score: 94.7 bits (234), Expect = 2.290e-24
Identity = 42/47 (89.36%), Postives = 45/47 (95.74%), Query Frame = 1 
Query:    1 QDIAAFIKKEFDKKYSATWHCIVGRNFGSYVTHETKHFIYFYLGQAS 141
            +DIAAFIKKEFDKKY+ TWHCIVGRNFGSYVTHETKHFIYFYLGQ +
Sbjct:   36 KDIAAFIKKEFDKKYNPTWHCIVGRNFGSYVTHETKHFIYFYLGQVA 82
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9745.17743.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Dynein1.310e-2597.78light chain n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
Dynein1.380e-2593.62light chain n=2 Tax=Stramenopiles TaxID=33634 RepI... [more]
Dynein7.970e-2591.49light chain n=1 Tax=Stichopus japonicus TaxID=3079... [more]
dynein7.970e-2591.49light chain 2, cytoplasmic n=2 Tax=Protostomia Tax... [more]
Dynein1.640e-2489.36light chain n=1 Tax=Hypsibius dujardini TaxID=2323... [more]
Dynein2.160e-2489.36light chain n=2 Tax=Myripristis murdjan TaxID=5868... [more]
Dynein2.290e-2489.36light chain n=26 Tax=Oomycota TaxID=4762 RepID=W4H... [more]
Dynein2.290e-2489.36light chain n=7 Tax=Clupeocephala TaxID=186625 Rep... [more]
Dynein2.290e-2489.36light chain n=2 Tax=Micromonas pusilla TaxID=38833... [more]
Dynein2.290e-2489.36light chain n=4 Tax=Branchiostoma TaxID=7737 RepID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9745contigE_fasciculatus_S2_contig9745:143..283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score98.2
Seed ortholog evalue1.1e-18
Seed eggNOG ortholog2880.D7FVR3
Preferred nameDYNLL1
Model size141
KEGG koko:K10418
KEGG Pathwayko04962,map04962
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000003,GO:0000086,GO:0000278,GO:0000775,GO:0000776,GO:0001505,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0002478,GO:0002495,GO:0002504,GO:0002791,GO:0002793,GO:0003006,GO:0003674,GO:0003824,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0005737,GO:0005739,GO:0005813,GO:0005815,GO:0005819,GO:0005829,GO:0005856,GO:0005868,GO:0005875,GO:0005886,GO:0005929,GO:0006807,GO:0006809,GO:0006810,GO:0006887,GO:0006888,GO:0006914,GO:0006928,GO:0006955,GO:0006996,GO:0007017,GO:0007018,GO:0007049,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007346,GO:0008022,GO:0008092,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010389,GO:0010563,GO:0010564,GO:0010638,GO:0010646,GO:0010647,GO:0010817,GO:0010970,GO:0012505,GO:0012506,GO:0015629,GO:0015630,GO:0016020,GO:0016043,GO:0016192,GO:0016236,GO:0016459,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0019220,GO:0019222,GO:0019882,GO:0019884,GO:0019886,GO:0019899,GO:0019904,GO:0019953,GO:0022402,GO:0022406,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023056,GO:0030030,GO:0030031,GO:0030141,GO:0030154,GO:0030234,GO:0030235,GO:0030286,GO:0030424,GO:0030659,GO:0030667,GO:0030705,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031344,GO:0031346,GO:0031410,GO:0031503,GO:0031982,GO:0032024,GO:0032501,GO:0032502,GO:0032504,GO:0032781,GO:0032838,GO:0032879,GO:0032880,GO:0032940,GO:0032991,GO:0033043,GO:0033267,GO:0034641,GO:0035721,GO:0035735,GO:0035774,GO:0036230,GO:0042073,GO:0042119,GO:0042133,GO:0042136,GO:0042325,GO:0042326,GO:0042623,GO:0042802,GO:0042803,GO:0042995,GO:0043005,GO:0043085,GO:0043086,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043299,GO:0043312,GO:0043462,GO:0044085,GO:0044087,GO:0044089,GO:0044092,GO:0044093,GO:0044237,GO:0044248,GO:0044249,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044430,GO:0044433,GO:0044441,GO:0044444,GO:0044446,GO:0044458,GO:0044463,GO:0044464,GO:0044703,GO:0044770,GO:0044772,GO:0044782,GO:0044839,GO:0045019,GO:0045055,GO:0045321,GO:0045428,GO:0045505,GO:0045724,GO:0045936,GO:0046209,GO:0046883,GO:0046887,GO:0046903,GO:0046907,GO:0046982,GO:0046983,GO:0048002,GO:0048193,GO:0048232,GO:0048468,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048609,GO:0048856,GO:0048869,GO:0050708,GO:0050714,GO:0050789,GO:0050790,GO:0050794,GO:0050796,GO:0050896,GO:0051046,GO:0051047,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051171,GO:0051172,GO:0051174,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051336,GO:0051345,GO:0051640,GO:0051641,GO:0051649,GO:0051704,GO:0051726,GO:0051959,GO:0060271,GO:0060341,GO:0060491,GO:0061178,GO:0061919,GO:0065007,GO:0065008,GO:0065009,GO:0070201,GO:0070820,GO:0070821,GO:0070925,GO:0071840,GO:0071944,GO:0072593,GO:0072686,GO:0090087,GO:0090276,GO:0090277,GO:0097110,GO:0097458,GO:0097542,GO:0097708,GO:0097711,GO:0098588,GO:0098687,GO:0098772,GO:0098805,GO:0099111,GO:0099503,GO:0099568,GO:0101002,GO:0101003,GO:0120025,GO:0120031,GO:0120032,GO:0120034,GO:0120035,GO:0120036,GO:0120038,GO:0120111,GO:0140056,GO:1901987,GO:1901990,GO:1902017,GO:1902115,GO:1902117,GO:1902494,GO:1902749,GO:1902855,GO:1902857,GO:1903047,GO:1903409,GO:1903426,GO:1903427,GO:1903530,GO:1903532,GO:1904115,GO:1904406,GO:1904951,GO:2000377,GO:2000378,GO:2000574,GO:2000576,GO:2000580,GO:2000582,GO:2001057
Exons1
EggNOG free text desc.positive regulation of ATP-dependent microtubule motor activity, plus-end-directed
EggNOG OGsKOG3430@1,KOG3430@2759
Cds size141
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842618.7243907-CDS-E_fasciculatus_S2_contig9745:142..2831696842618.7243907-CDS-E_fasciculatus_S2_contig9745:142..283Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9745 143..283 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9745.17743.1prot_E_fasciculatus_S2_contig9745.17743.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9745 143..283 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9745.17743.1

>prot_E_fasciculatus_S2_contig9745.17743.1 ID=prot_E_fasciculatus_S2_contig9745.17743.1|Name=mRNA_E_fasciculatus_S2_contig9745.17743.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=47bp
QDIAAFIKKEFDKKYSATWHCIVGRNFGSYVTHETKHFIYFYLGQAS
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mRNA from alignment at E_fasciculatus_S2_contig9745:143..283+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9745.17743.1 ID=mRNA_E_fasciculatus_S2_contig9745.17743.1|Name=mRNA_E_fasciculatus_S2_contig9745.17743.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=141bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9745:143..283+ (Ectocarpus fasciculatus EfasUO2)
CAGGACATTGCCGCCTTCATCAAGAAGGAGTTCGACAAGAAGTACAGCGC
AACCTGGCACTGCATTGTGGGCCGCAACTTTGGGTCCTACGTTACCCACG
AAACGAAGCACTTCATCTACTTCTACTTGGGCCAGGCAAGT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9745:143..283+

>mRNA_E_fasciculatus_S2_contig9745.17743.1 ID=mRNA_E_fasciculatus_S2_contig9745.17743.1|Name=mRNA_E_fasciculatus_S2_contig9745.17743.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=141bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9745:143..283+ (Ectocarpus fasciculatus EfasUO2)
CAGGACATTGCCGCCTTCATCAAGAAGGAGTTCGACAAGAAGTACAGCGC
AACCTGGCACTGCATTGTGGGCCGCAACTTTGGGTCCTACGTTACCCACG
AAACGAAGCACTTCATCTACTTCTACTTGGGCCAGGCAAGT
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