mRNA_E_fasciculatus_S2_contig9742.17741.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9742.17741.1 vs.
Match: K+ (transporter, Kef-type n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LKX7_ECTSI) HSP 1 Score: 759 bits (1960), Expect = 2.680e-265 Identity = 463/652 (71.01%), Postives = 485/652 (74.39%), Query Frame = 1
Query: 7 PQVAFPFFVSFLLLVXXXXXXXXXXXXXXXXXXXXXXXXXXXRRKARNALLAAYFVLDGDGVEGLSRDQLVGVLTVEAGVGIDREQAEQLWHVLVPEDEDDFVHYSRSYSVPIENDRFGEDSTACANNSSDDGDVGRKNSRASSSGNSHAAKDGFRMARARARSLPHGPSGGXXXXXXXXXXRARGIRGGSGRRLDVHAFLRLADLLHVKVVESGEDGVDGMEGGRTCFIAGYGDEGFGSAHEGKTRERGEGAQGMGSLGDGRYSFREDEEELEGGGDQEHQ-ETFCWCPRDKRGNSDSSNNSERRSAGGEGCTKDDESEAFWSQRRLKRLARRVEEQARAAARDMVGREWFSLMSKGIGVLLAMLALTWTPRSQLRYDKCPLGEGEEVCDTPHESQVDFRREDLFRRLEGLVLLAFSFEMAAKVLAVGGRRLLRLHWAHRFDLMILMACLASYLLVGVPGNRRALYVDRHPMLSDVVELPMAIAVLRLVTVFPQLRKLLETMSTVAGMLMKIMVLYSCVSYTFATLGMAIFATAKSDLLEPRYSFSTLPEAAMTLFFLTVSNNWNDLLYPLVDSNRLGRWSAIYFVAYMLFCATMMLDVLTGVVIEGFRVSTKGPEQAQQAGSGPASTALAGSGDVTDRPTLARSDDGDSG 1959
P VAFPFFVSFLLLVXXXXXXXXXXXXXXXXXXXXXXXXXXXRRKARNALLAAYFVLDGDGVEGLSRDQLVGVLTVEAGVGIDREQ V ESGE G DG EGGRTCFIAGYGDE FGSAH G+ + GEG G GSLGDG+YSFREDEE+LEGGG QE + + CWCPRDKRGNSDS+NNSERR A EGC+ D +S AF QRRLKRLA R+EEQARAAARDMVGREWFSLMSKGIGVLLAMLA+TWTPRSQLRYDKCPLGEGEEVC+ PHES+V F REDLFRRLEGLVLLAFSFEMAAKVLAVGGRRLLRLHWAHRFDL+IL CLASYL VG+PGNRRALYVD HP+LSDV+ELPMA+AVLRLVTVFPQLRKLLETMSTVAGMLMKIMVLYSCVSYTFATLGMAIF+ A+SDLLEPRYSFSTLPEAAMTLFFLTVSNNWNDLLYPLVDSN LGRWSAIYFVAYMLFCATMMLDVLTGVVIEGFRVSTKGPEQAQ+ G ASTA AG+GD T RPTLARSDDGDSG
Sbjct: 213 PLVAFPFFVSFLLLVXXXXXXXXXXXXXXXXXXXXXXXXXXXRRKARNALLAAYFVLDGDGVEGLSRDQLVGVLTVEAGVGIDREQ----------------------------------------------------------------------------------------------------------------------------VAESGEGG-DGAEGGRTCFIAGYGDELFGSAHGGQRWDGGEGTHGAGSLGDGKYSFREDEEDLEGGGGQEQERQKVCWCPRDKRGNSDSTNNSERRRADSEGCSGDGDSVAFCPQRRLKRLAHRMEEQARAAARDMVGREWFSLMSKGIGVLLAMLAVTWTPRSQLRYDKCPLGEGEEVCNKPHESEVAFLREDLFRRLEGLVLLAFSFEMAAKVLAVGGRRLLRLHWAHRFDLIILATCLASYLFVGMPGNRRALYVDHHPLLSDVIELPMALAVLRLVTVFPQLRKLLETMSTVAGMLMKIMVLYSCVSYTFATLGMAIFSNARSDLLEPRYSFSTLPEAAMTLFFLTVSNNWNDLLYPLVDSNPLGRWSAIYFVAYMLFCATMMLDVLTGVVIEGFRVSTKGPEQAQELGLRLASTASAGAGDATGRPTLARSDDGDSG 739
BLAST of mRNA_E_fasciculatus_S2_contig9742.17741.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CFS5_9STRA) HSP 1 Score: 110 bits (276), Expect = 4.490e-22 Identity = 68/212 (32.08%), Postives = 120/212 (56.60%), Query Frame = 1
Query: 1228 LEGLVLLAFSFEMAAKVLAVGGRRLLRLHWAHRFDLMILMACLASYLL-VGVPGNRRALYVDRHPMLSDVVELPMAIAVLRLVTVFPQLRKLLETMSTVAGMLMKIMVLYSCVSYTFATLGMAIFAT-AKSDLLEPRYSFSTLPEAAMTLFFLTVSNNWNDLLYPLVDSNRLGRWSAIYFVAYMLFCATMMLDVLTGVVIEGFRVSTKGPEQ 1857
+ G+ ++A + E++ ++ A G R WA R D++ + LA +L + PG D L D + L ++ +R+++VF + R + T++ + M++ VLY V+Y FA +GM F + D E R+ F T A + L L+V+NNW D++YP++ + GRW+A+YFVAY + C ++L++L+G+VIE + S + E+
Sbjct: 194 IAGIAIMAQAAELSVRIAANGFPRFWASAWA-RVDVVAVAVSLAVCILSLCAPGATLTQLPDAG--LQDAIGLLRSLRYVRVLSVFERFRAFVATVADGVAVAMRLFVLYFSVTYAFAVVGMEWFGDLGQHDDGEQRWGFETFGAAMLALTQLSVTNNWQDVMYPVLRDSAAGRWAALYFVAYFVLCVILLLNILSGIVIEAYSNSKQRLEE 402
BLAST of mRNA_E_fasciculatus_S2_contig9742.17741.1 vs.
Match: voltage-dependent (T-type calcium channel subunit alpha-1H-like isoform X1 n=26 Tax=Thunnus TaxID=8234 RepID=UPI001CF6CA03) HSP 1 Score: 62.0 bits (149), Expect = 4.020e-6 Identity = 39/129 (30.23%), Postives = 68/129 (52.71%), Query Frame = 1
Query: 1465 RLVTVFPQLRKLLETMSTVAGMLMKIMVLYSCVSYTFATLGMAIFA------TAKSDLLEPRYSFSTLPEAAMTLFFLTVSNNWNDLLYPLVDSNRLGRWSAIYFVAYMLFCATMMLDVLTGVVIEGFR 1833
RLV P LRK L + + +L ++TF+ LGM +F T D + R +F +L + +T+F + +WN +LY + + WSA+YFVA ++F ++L+VL G+V++ ++
Sbjct: 560 RLVHFLPYLRKQLLVLKRTIEKAAALCMLLLFATFTFSVLGMHLFGCQFSFKTVHGDTITDRKNFDSLLWSMVTVFQILTHEDWNLVLYNAMTAT--SPWSALYFVALIIFGKHVLLNVLVGIVVKSYQ 686
BLAST of mRNA_E_fasciculatus_S2_contig9742.17741.1 vs.
Match: Ion (transport protein n=1 Tax=Microbulbifer sp. THAF38 TaxID=2587856 RepID=A0A5P9ERN1_9GAMM) HSP 1 Score: 59.7 bits (143), Expect = 5.250e-6 Identity = 53/197 (26.90%), Postives = 92/197 (46.70%), Query Frame = 1
Query: 1237 LVLLAFSFEMAAKVLAVGGR--RLLRLHWAHRFDLMILMACLASYLLVGVPGNRRALYVDRHPMLSDVVELPMAIAVLRLVTVFPQLRKLLETMSTVAGMLMKIMVLYSCVSYTFATLGMAIFATAKSDLLEPRYSFSTLPEAAMTLFFLTVSNNWNDLLYPLVDSNRLGRWSAIYFVAYMLFCATMMLDVLTGVVI 1821
LVL+AF E A K+ + G R R W + FD I+ + L+ G L LV+ FP+LR L++T+ +M I +L + Y + G +F ++P + + +LP A ++LF + +W D++Y +DS W+ +YFV++++ A +M+++ GVVI
Sbjct: 62 LVLIAFILEAAIKIASQGSRPWRYFASGW-NCFDFTII-----ALSLIPATGPLATLXXXXXXXXXX-----------XLVSAFPELRTLVDTLLRSLPSMMHIAILMGIIFYIYGVAGYFLFHE-----VDPTH-WRSLPIALLSLFRIVTFEDWTDIMYTAMDSMP---WAWLYFVSFVVMGAFVMINLFIGVVI 232
BLAST of mRNA_E_fasciculatus_S2_contig9742.17741.1 vs.
Match: Ion (transporter n=1 Tax=Microbulbifer sp. A4B17 TaxID=359370 RepID=A0A2S1JMW8_9GAMM) HSP 1 Score: 57.8 bits (138), Expect = 2.250e-5 Identity = 35/118 (29.66%), Postives = 68/118 (57.63%), Query Frame = 1
Query: 1468 LVTVFPQLRKLLETMSTVAGMLMKIMVLYSCVSYTFATLGMAIFATAKSDLLEPRYSFSTLPEAAMTLFFLTVSNNWNDLLYPLVDSNRLGRWSAIYFVAYMLFCATMMLDVLTGVVI 1821
LV+ FP+LR L++T+ +M I +L S + Y + G +F ++P + + +LP A ++LF + +W D++Y +DS W+ +YFV++++ A +M+++ GVV+
Sbjct: 124 LVSAFPELRTLVDTLLRSLPSMMHIALLMSIIFYIYGVAGYFLFHD-----IDPTH-WRSLPIAFLSLFRIVTFEDWTDIMYTAMDSMP---WAWLYFVSFVVMGAFVMINLFIGVVL 232
BLAST of mRNA_E_fasciculatus_S2_contig9742.17741.1 vs.
Match: Ion (transporter n=2 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A2E8K532_9GAMM) HSP 1 Score: 57.0 bits (136), Expect = 3.220e-5 Identity = 35/130 (26.92%), Postives = 68/130 (52.31%), Query Frame = 1
Query: 1432 VVELPMAIAVLRLVTVFPQLRKLLETMSTVAGMLMKIMVLYSCVSYTFATLGMAIFATAKSDLLEPRYSFSTLPEAAMTLFFLTVSNNWNDLLYPLVDSNRLGRWSAIYFVAYMLFCATMMLDVLTGVVI 1821
V L VLR++++ P+LR LL ++ L +M L + Y +A +G +F +DL + + + +TLF + +W D++Y +++ + WS YFV+++ F A L+++ G+V+
Sbjct: 102 VARLVRVFRVLRMISIIPELRVLLNSLLVALPRLGYVMALMFIIFYIYAAVGSLLFEKINADL------WGDIAISMLTLFRVMTFEDWTDVMYEVME---VYGWSWAYFVSFIFFTAFAFLNMVIGIVV 222
BLAST of mRNA_E_fasciculatus_S2_contig9742.17741.1 vs.
Match: Ion (transporter n=1 Tax=Proteobacteria bacterium TaxID=1977087 RepID=A0A2G6DAH6_9PROT) HSP 1 Score: 57.0 bits (136), Expect = 3.540e-5 Identity = 31/121 (25.62%), Postives = 65/121 (53.72%), Query Frame = 1
Query: 1459 VLRLVTVFPQLRKLLETMSTVAGMLMKIMVLYSCVSYTFATLGMAIFATAKSDLLEPRYSFSTLPEAAMTLFFLTVSNNWNDLLYPLVDSNRLGRWSAIYFVAYMLFCATMMLDVLTGVVI 1821
VLR+V++ P+LR LL ++ L +++L + Y +A +G +F T +L + + A +TLF + +W D++Y ++ +S IY+++++ F L+++ G+V+
Sbjct: 116 VLRMVSIIPELRILLNSLLKALPQLAYVIMLMFIIFYIYAAIGSTLFETVNPEL------WRNISIAMLTLFRVMTFEDWTDVMYETMNHENGSPYSWIYYLSFIFFTTFAFLNMIIGIVV 230
BLAST of mRNA_E_fasciculatus_S2_contig9742.17741.1 vs.
Match: Hypothetical (protein n=3 Tax=Adineta ricciae TaxID=249248 RepID=A0A814L8D7_ADIRI) HSP 1 Score: 58.2 bits (139), Expect = 6.200e-5 Identity = 25/67 (37.31%), Postives = 45/67 (67.16%), Query Frame = 1
Query: 1630 RYSFSTLPEAAMTLFFLTVSNNWNDLLYPLVDSNRLGRWSAIYFVAYMLFCATMMLDVLTGVVIEGF 1830
R +F TL A +T+F + +WN++LY ++ + G WSA+YF+A M+F ++L++L +++EGF
Sbjct: 1067 RPNFDTLRGALLTVFQILTQEDWNEVLYKAME--KTGSWSALYFIALMIFGNYVLLNLLVAILVEGF 1131
BLAST of mRNA_E_fasciculatus_S2_contig9742.17741.1 vs.
Match: Voltage-gated (sodium channel n=1 Tax=Microbulbifer rhizosphaerae TaxID=1562603 RepID=A0A7W4WDH2_9GAMM) HSP 1 Score: 55.8 bits (133), Expect = 9.240e-5 Identity = 33/118 (27.97%), Postives = 68/118 (57.63%), Query Frame = 1
Query: 1468 LVTVFPQLRKLLETMSTVAGMLMKIMVLYSCVSYTFATLGMAIFATAKSDLLEPRYSFSTLPEAAMTLFFLTVSNNWNDLLYPLVDSNRLGRWSAIYFVAYMLFCATMMLDVLTGVVI 1821
LV+ FP+LR L++T+ + I +L S + Y +A G +F ++P + + +LP A ++LF + +W D++Y ++S W+ +YF+++++ A +M+++ GVV+
Sbjct: 124 LVSAFPELRLLVDTLLKSLPSMFHIALLMSIIFYIYAVAGYFLFHE-----IDPTH-WRSLPIALLSLFRIVTFEDWTDIMYTAMESMP---WAWVYFISFVVMGAFVMINLFIGVVL 232
BLAST of mRNA_E_fasciculatus_S2_contig9742.17741.1 vs.
Match: Voltage-gated (sodium channel n=2 Tax=Microbulbifer TaxID=48073 RepID=A0A1M5DRG5_9GAMM) HSP 1 Score: 55.8 bits (133), Expect = 9.610e-5 Identity = 52/204 (25.49%), Postives = 93/204 (45.59%), Query Frame = 1
Query: 1216 LFRRLEGLVLLAFSFEMAAKVLAVGGR--RLLRLHWAHRFDLMILMACLASYLLVGVPGNRRALYVDRHPMLSDVVELPMAIAVLRLVTVFPQLRKLLETMSTVAGMLMKIMVLYSCVSYTFATLGMAIFATAKSDLLEPRYSFSTLPEAAMTLFFLTVSNNWNDLLYPLVDSNRLGRWSAIYFVAYMLFCATMMLDVLTGVVI 1821
L + L+LLAF E A K+ A G R R W + FD I+ + L+ G L LV+ FP+LR L++T+ + I +L + Y + G +F+ ++P + + LP A ++LF + +W D++Y ++S W+ +YFV++++ A +M+++ GVV+
Sbjct: 55 LLAGINQLILLAFVVEAAIKMAAHGNRPWRYFASGW-NCFDFSII-----ALSLIPAAGPLATLXXXXXXXXXX-----------XLVSAFPELRLLVDTLLRSLPSMFHISLLMGIIFYIYGVAGYFLFSE-----IDPTH-WRNLPIALLSLFRIVTFEDWTDIMYTAMESMP---WAWLYFVSFVVMGAFVMINLFIGVVL 232 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9742.17741.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 10
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9742.17741.1 >prot_E_fasciculatus_S2_contig9742.17741.1 ID=prot_E_fasciculatus_S2_contig9742.17741.1|Name=mRNA_E_fasciculatus_S2_contig9742.17741.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=677bp MIPQVAFPFFVSFLLLVLVVILPLLLGIVLDTYAQQHARQHERYRRKARNback to top mRNA from alignment at E_fasciculatus_S2_contig9742:97..5656- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9742.17741.1 ID=mRNA_E_fasciculatus_S2_contig9742.17741.1|Name=mRNA_E_fasciculatus_S2_contig9742.17741.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5560bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9742:97..5656- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9742:97..5656- >mRNA_E_fasciculatus_S2_contig9742.17741.1 ID=mRNA_E_fasciculatus_S2_contig9742.17741.1|Name=mRNA_E_fasciculatus_S2_contig9742.17741.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=2031bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9742:97..5656- (Ectocarpus fasciculatus EfasUO2)back to top |