mRNA_E_fasciculatus_S2_contig9741.17739.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9741.17739.1
Unique NamemRNA_E_fasciculatus_S2_contig9741.17739.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9741.17739.1 vs.
Match: Uncharacterized (protein (Fragment) n=3 Tax=Flavobacteriales TaxID=200644 RepID=A0A3D4BUE4_9FLAO)

HSP 1 Score: 651 bits (1679), Expect = 1.220e-231
Identity = 314/380 (82.63%), Postives = 359/380 (94.47%), Query Frame = 1 
Query:    1 DSWDFPKSPEELYFAPNGSRFANWNKVSNHFFEAFRSGSTTLKSSTDKPETAYQELQKVSAIRFFSPDRNGNFTLNREELVNLQNTDKGKQLHDFFRKLTGEEKPLIEFVKDDLHKAAKEDPWLDRGMKDAVIEATARNGSKLNQDQIKAVEKNWLLHTLENQATGDFSFVTDYEEKDTRDKPKGG-SIFMNSSGGFGGVNTRKGPLYVEEMTAQEIEATYGPFGKRGEGTGAAPENTFAISLSLAGETGIELPARTTESKDGKVAQDFRLTDLRYDRNGNIFYRGLYSTRDGLNIRNEANVKKSGQKTGWISMSEEDESLFTTRTEGISPVVLMSLTDGFFEKFPELKSKYGKKADQIRSVITENDPAPET-ESEVLDL 1134
            DSWDFPKSPEELYFAPNGSRFANWNKVSN+FFEAFRSGSTTLKSS+++PETAY+ELQKVSAIRFFSPDRNGNFTL+REEL NLQNT+KGKQLHDFFR++TGEEKPLIEFVKDDLHKAAKEDPWLDRGMKDAVIEAT +NGS LNQDQI+AVEKNWLLHTLENQATGDFSF TDYE+KD +D  +GG S+FMN++GGFGG+NT+KG LYVEEMT QEI +TYGP G+ GEG GA+PENTFAISLSLAGETGIELPART++S+DGKVA+DFRLTDLRYDRNGN +YRG+Y+T +G+N+R E NVKK+GQ+TGWISM+E++ESLFTTRTEGISP+VLMSLTDGFFEKFPEL+S+YGKK+ QIRSVITE+DP PET E+++LDL
Sbjct:  167 DSWDFPKSPEELYFAPNGSRFANWNKVSNNFFEAFRSGSTTLKSSSEQPETAYRELQKVSAIRFFSPDRNGNFTLSREELTNLQNTEKGKQLHDFFRRITGEEKPLIEFVKDDLHKAAKEDPWLDRGMKDAVIEATKKNGSNLNQDQIEAVEKNWLLHTLENQATGDFSFSTDYEKKDPKDHSEGGGSVFMNAAGGFGGINTKKGRLYVEEMTTQEIASTYGPVGENGEGAGASPENTFAISLSLAGETGIELPARTSDSRDGKVAEDFRLTDLRYDRNGNFYYRGVYATDEGMNLRGEGNVKKAGQRTGWISMTEDEESLFTTRTEGISPIVLMSLTDGFFEKFPELQSRYGKKSKQIRSVITEDDPTPETTETDILDL 546
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9741.17739.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.220e-23182.63protein (Fragment) n=3 Tax=Flavobacteriales TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9741contigE_fasciculatus_S2_contig9741:3..1148 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size1146
Hectar predicted targeting categoryother localisation
Exons1
Cds size1146
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842618.4848406-CDS-E_fasciculatus_S2_contig9741:2..11481696842618.4848406-CDS-E_fasciculatus_S2_contig9741:2..1148Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9741 3..1148 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9741.17739.1prot_E_fasciculatus_S2_contig9741.17739.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9741 3..1148 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9741.17739.1

>prot_E_fasciculatus_S2_contig9741.17739.1 ID=prot_E_fasciculatus_S2_contig9741.17739.1|Name=mRNA_E_fasciculatus_S2_contig9741.17739.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=382bp
DSWDFPKSPEELYFAPNGSRFANWNKVSNHFFEAFRSGSTTLKSSTDKPE
TAYQELQKVSAIRFFSPDRNGNFTLNREELVNLQNTDKGKQLHDFFRKLT
GEEKPLIEFVKDDLHKAAKEDPWLDRGMKDAVIEATARNGSKLNQDQIKA
VEKNWLLHTLENQATGDFSFVTDYEEKDTRDKPKGGSIFMNSSGGFGGVN
TRKGPLYVEEMTAQEIEATYGPFGKRGEGTGAAPENTFAISLSLAGETGI
ELPARTTESKDGKVAQDFRLTDLRYDRNGNIFYRGLYSTRDGLNIRNEAN
VKKSGQKTGWISMSEEDESLFTTRTEGISPVVLMSLTDGFFEKFPELKSK
YGKKADQIRSVITENDPAPETESEVLDLTGI*
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mRNA from alignment at E_fasciculatus_S2_contig9741:3..1148+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9741.17739.1 ID=mRNA_E_fasciculatus_S2_contig9741.17739.1|Name=mRNA_E_fasciculatus_S2_contig9741.17739.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1146bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9741:3..1148+ (Ectocarpus fasciculatus EfasUO2)
GACAGTTGGGATTTCCCGAAAAGCCCGGAAGAATTATACTTCGCTCCCAA
TGGCAGCCGCTTTGCCAACTGGAACAAAGTGTCCAACCACTTTTTTGAAG
CTTTCCGTTCCGGCAGCACCACTTTAAAGAGCAGTACCGATAAACCGGAA
ACCGCCTACCAGGAACTTCAAAAGGTGTCCGCTATACGGTTCTTCAGCCC
GGATCGTAATGGAAATTTTACCCTGAACCGTGAGGAATTGGTGAACCTTC
AGAACACCGACAAGGGTAAACAGTTGCATGATTTCTTCCGTAAGCTCACG
GGTGAGGAAAAACCCCTGATCGAGTTTGTAAAAGATGATCTGCATAAGGC
GGCCAAAGAAGACCCCTGGTTAGACCGGGGCATGAAAGATGCTGTTATTG
AGGCCACCGCCAGGAATGGTTCAAAACTCAATCAGGATCAGATAAAAGCC
GTAGAAAAGAACTGGCTTTTACACACCCTGGAAAACCAGGCCACGGGTGA
TTTCTCTTTTGTCACAGACTACGAAGAAAAAGACACCAGGGACAAACCTA
AAGGGGGAAGCATCTTTATGAATAGTTCCGGTGGTTTTGGGGGAGTCAAC
ACCAGGAAAGGCCCGCTATATGTCGAAGAAATGACTGCGCAGGAGATAGA
AGCCACCTATGGCCCGTTTGGGAAAAGAGGGGAAGGTACCGGAGCAGCGC
CCGAAAACACTTTTGCTATTTCGCTTTCCCTGGCCGGTGAAACGGGGATT
GAGCTACCGGCCAGAACCACAGAATCCAAAGATGGTAAAGTGGCTCAGGA
TTTCCGGTTAACAGACCTGAGATATGACCGCAACGGGAACATTTTTTACC
GGGGCTTATACTCCACCAGGGACGGCCTTAATATTAGAAACGAAGCCAAC
GTCAAGAAGTCCGGGCAAAAGACCGGCTGGATCAGTATGTCCGAAGAAGA
TGAGTCCTTGTTCACCACCAGAACAGAAGGGATTTCACCTGTAGTTCTAA
TGTCCCTTACTGATGGTTTTTTTGAAAAGTTCCCGGAACTCAAATCAAAG
TATGGTAAGAAAGCCGACCAAATCCGTTCCGTGATCACCGAAAACGACCC
TGCACCTGAAACAGAAAGCGAAGTTTTAGACCTAACCGGAATTTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9741:3..1148+

>mRNA_E_fasciculatus_S2_contig9741.17739.1 ID=mRNA_E_fasciculatus_S2_contig9741.17739.1|Name=mRNA_E_fasciculatus_S2_contig9741.17739.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1146bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9741:3..1148+ (Ectocarpus fasciculatus EfasUO2)
GACAGTTGGGATTTCCCGAAAAGCCCGGAAGAATTATACTTCGCTCCCAA
TGGCAGCCGCTTTGCCAACTGGAACAAAGTGTCCAACCACTTTTTTGAAG
CTTTCCGTTCCGGCAGCACCACTTTAAAGAGCAGTACCGATAAACCGGAA
ACCGCCTACCAGGAACTTCAAAAGGTGTCCGCTATACGGTTCTTCAGCCC
GGATCGTAATGGAAATTTTACCCTGAACCGTGAGGAATTGGTGAACCTTC
AGAACACCGACAAGGGTAAACAGTTGCATGATTTCTTCCGTAAGCTCACG
GGTGAGGAAAAACCCCTGATCGAGTTTGTAAAAGATGATCTGCATAAGGC
GGCCAAAGAAGACCCCTGGTTAGACCGGGGCATGAAAGATGCTGTTATTG
AGGCCACCGCCAGGAATGGTTCAAAACTCAATCAGGATCAGATAAAAGCC
GTAGAAAAGAACTGGCTTTTACACACCCTGGAAAACCAGGCCACGGGTGA
TTTCTCTTTTGTCACAGACTACGAAGAAAAAGACACCAGGGACAAACCTA
AAGGGGGAAGCATCTTTATGAATAGTTCCGGTGGTTTTGGGGGAGTCAAC
ACCAGGAAAGGCCCGCTATATGTCGAAGAAATGACTGCGCAGGAGATAGA
AGCCACCTATGGCCCGTTTGGGAAAAGAGGGGAAGGTACCGGAGCAGCGC
CCGAAAACACTTTTGCTATTTCGCTTTCCCTGGCCGGTGAAACGGGGATT
GAGCTACCGGCCAGAACCACAGAATCCAAAGATGGTAAAGTGGCTCAGGA
TTTCCGGTTAACAGACCTGAGATATGACCGCAACGGGAACATTTTTTACC
GGGGCTTATACTCCACCAGGGACGGCCTTAATATTAGAAACGAAGCCAAC
GTCAAGAAGTCCGGGCAAAAGACCGGCTGGATCAGTATGTCCGAAGAAGA
TGAGTCCTTGTTCACCACCAGAACAGAAGGGATTTCACCTGTAGTTCTAA
TGTCCCTTACTGATGGTTTTTTTGAAAAGTTCCCGGAACTCAAATCAAAG
TATGGTAAGAAAGCCGACCAAATCCGTTCCGTGATCACCGAAAACGACCC
TGCACCTGAAACAGAAAGCGAAGTTTTAGACCTAACCGGAATTTAA
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