mRNA_E_fasciculatus_S2_contig974.17738.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig974.17738.1
Unique NamemRNA_E_fasciculatus_S2_contig974.17738.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig974.17738.1 vs.
Match: CCT (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBX8_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 2.270e-19
Identity = 43/56 (76.79%), Postives = 48/56 (85.71%), Query Frame = 1 
Query:   13 GDGAICVSLPHMLSKYADMYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRY 180
            G  A  V+LPH+LSKY D+YN+NGRIGIYT QEREAIIARFK KR RRVW+KKIRY
Sbjct:  276 GSAATAVTLPHLLSKYTDVYNRNGRIGIYTAQEREAIIARFKAKRLRRVWRKKIRY 331
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig974.17738.1 vs.
Match: CCT (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K330_9PHAE)

HSP 1 Score: 85.9 bits (211), Expect = 3.800e-18
Identity = 42/43 (97.67%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:   52 SKYADMYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRY 180
            S+YADMYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRY
Sbjct:  509 SEYADMYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRY 551
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig974.17738.1 vs.
Match: CCT (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD77_ECTSI)

HSP 1 Score: 85.1 bits (209), Expect = 6.500e-18
Identity = 41/43 (95.35%), Postives = 43/43 (100.00%), Query Frame = 1 
Query:   52 SKYADMYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRY 180
            ++YADMYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRY
Sbjct:  379 TRYADMYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRY 421
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig974.17738.1 vs.
Match: CCT (domain-containing protein (Fragment) n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=K8YW04_NANGC)

HSP 1 Score: 84.0 bits (206), Expect = 1.760e-17
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:   37 LPHMLSKYADMYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRY 180
            LPHML+KY+D+YNK+GRIGIYTR ER+AIIARF+ KR RRVWKKKIRY
Sbjct:  441 LPHMLAKYSDVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRY 488
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig974.17738.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CLM4_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.810e-17
Identity = 39/48 (81.25%), Postives = 45/48 (93.75%), Query Frame = 1 
Query:   37 LPHMLSKYADMYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRY 180
            LPHML+KY+D+YNK+GRIGIYTR ER+AIIARF+ KR RRVWKKKIRY
Sbjct:  799 LPHMLAKYSDVYNKHGRIGIYTRDERDAIIARFREKRQRRVWKKKIRY 846
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig974.17738.1 vs.
Match: CCT (domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z588_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 1.050e-16
Identity = 37/50 (74.00%), Postives = 46/50 (92.00%), Query Frame = 1 
Query:   31 VSLPHMLSKYADMYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRY 180
            ++LPH+L KYAD+YN++GRIGIYT QEREAIIAR++ KR RRVW+KKIRY
Sbjct:  272 LTLPHLLHKYADVYNRSGRIGIYTLQEREAIIARYRAKRARRVWRKKIRY 321
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig974.17738.1 vs.
Match: Hypothetical (protein n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YJJ2_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 1.660e-15
Identity = 35/50 (70.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:   31 VSLPHMLSKYADMYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRY 180
            ++LPH L KY ++YN+NGRIGIYT  ER AIIARF +KR RRVW KKIRY
Sbjct:   37 LTLPHSLGKYKEVYNRNGRIGIYTPSERAAIIARFNKKRQRRVWNKKIRY 86
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig974.17738.1 vs.
Match: Hypothetical (protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BY79_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 4.090e-15
Identity = 38/57 (66.67%), Postives = 45/57 (78.95%), Query Frame = 1 
Query:   10 GGDGAICVSLPHMLSKYADMYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRY 180
            GG G   V+LPHML+KY+ +YNK GR+GIYT  ER AIIA+F+ KR RRVW KKIRY
Sbjct:  188 GGKGV--VTLPHMLAKYSQIYNKGGRVGIYTPAERTAIIAKFRSKRSRRVWNKKIRY 242
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig974.17738.1 vs.
Match: Hypothetical (protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2WG87_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 5.580e-15
Identity = 37/50 (74.00%), Postives = 41/50 (82.00%), Query Frame = 1 
Query:   31 VSLPHMLSKYADMYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRY 180
            + LPH L+KY+D+YNKNGRIGIYT  ER AIIARF  KR RRVW KKIRY
Sbjct:  261 LPLPHSLAKYSDIYNKNGRIGIYTPCERGAIIARFNEKRSRRVWNKKIRY 310
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig974.17738.1 vs.
Match: CCT (domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BW60_THAPS)

HSP 1 Score: 76.6 bits (187), Expect = 6.720e-15
Identity = 38/60 (63.33%), Postives = 45/60 (75.00%), Query Frame = 1 
Query:    1 GGGGGDGAICVSLPHMLSKYADMYNKNGRIGIYTRQEREAIIARFKRKRGRRVWKKKIRY 180
            G GGG+  + ++LPH LSKY ++YNKNGRIGIYT  ER  II +F  KR RRVW KKIRY
Sbjct:  369 GSGGGEKGV-LTLPHSLSKYKEVYNKNGRIGIYTPAERAVIITKFNAKRARRVWNKKIRY 427
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig974.17738.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
CCT2.270e-1976.79domain-containing protein n=1 Tax=Tribonema minus ... [more]
CCT3.800e-1897.67domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
CCT6.500e-1895.35domain-containing protein n=1 Tax=Ectocarpus silic... [more]
CCT1.760e-1781.25domain-containing protein (Fragment) n=2 Tax=Nanno... [more]
Uncharacterized1.810e-1781.25protein n=1 Tax=Nannochloropsis salina CCMP1776 Ta... [more]
CCT1.050e-1674.00domain-containing protein n=1 Tax=Tribonema minus ... [more]
Hypothetical1.660e-1570.00protein n=1 Tax=Amphiprora paludosa TaxID=265537 R... [more]
Hypothetical4.090e-1566.67protein n=1 Tax=Corethron hystrix TaxID=216773 Rep... [more]
Hypothetical5.580e-1574.00protein n=1 Tax=Eucampia antarctica TaxID=49252 Re... [more]
CCT6.720e-1563.33domain-containing protein n=1 Tax=Thalassiosira ps... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig974contigE_fasciculatus_S2_contig974:24168..25152 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score86.3
Seed ortholog evalue5.4e-15
Seed eggNOG ortholog2880.D8LD77
Model size180
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.CCT motif
EggNOG OGs2E1UC@1,2S94C@2759
Cds size180
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842618.4228854-CDS-E_fasciculatus_S2_contig974:24167..242231696842618.4228854-CDS-E_fasciculatus_S2_contig974:24167..24223Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig974 24168..24223 +
1696842618.4467123-CDS-E_fasciculatus_S2_contig974:25028..251521696842618.4467123-CDS-E_fasciculatus_S2_contig974:25028..25152Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig974 25029..25152 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig974.17738.1prot_E_fasciculatus_S2_contig974.17738.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig974 24168..25152 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig974.17738.1

>prot_E_fasciculatus_S2_contig974.17738.1 ID=prot_E_fasciculatus_S2_contig974.17738.1|Name=mRNA_E_fasciculatus_S2_contig974.17738.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=60bp
GGGGGDGAICVSLPHMLSKYADMYNKNGRIGIYTRQEREAIIARFKRKRG
RRVWKKKIRY
back to top

mRNA from alignment at E_fasciculatus_S2_contig974:24168..25152+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig974.17738.1 ID=mRNA_E_fasciculatus_S2_contig974.17738.1|Name=mRNA_E_fasciculatus_S2_contig974.17738.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=985bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig974:24168..25152+ (Ectocarpus fasciculatus EfasUO2)
GGGGGGGGGGGGGGAGACGGCGCTATCTGCGTCTCCCTGCCGCACATGCT
CTCGAAGTGAGTCGTGTTTGTTTTTTCGACAGGGGGGAGGGGGAGCTTCG
TTTCCGTAGCATTTCAAGTCAATGTTGGGTCCGTGTGTGTCCTCTACTCA
GTGGGAATAGTTTTGGGCGGGAAGGTCTCACCTCACTCCATCTCCTTTAT
TTACGTCATGCAGATCATGGTTTCGGTCCAGTGTGTTTTTTTTTTCCATG
GGGACTTCTTGGTCTTGTTTCACTATTGCAACCTAACCGTCCACCCTAGT
TGGTTATTTTAAAGATCCAGTGCCATAACAGAGCGCTTGATCTGTGTCCA
CAAGCGCTGCGTACAAATCCGCTACATCTAGTTGCCTCGGGAGTAAAAAA
TAGAAATGGCAATGGTGGATTTACCCACCGAAAACAGCATCTTTATTTCA
AGTAGAAAACACGCGTGACATCTCAAAGCAAGACTACCCACTAGAGACAG
TTCGGATGTGTGTGGTCCAGGTCTTGGTGAGAGCAGAGGGCTACCTGCTG
CTGCATGGCATGCTGGACTCTGTGTTGGTACCTACTCTTGGTTCGGTAGA
GACTCTCCGGAGATTTGCCACAGTTTCGGCCTGTCGTGGTTTCGTTTCGT
ACGTTGTTTTCCACAGGTTGTGTTTGCAGATGAGATGATGTGCCACTGCT
CTGTGTCACTGATGTCTTTTTTTTTTTCCTCCTACATCTTGATATCTACG
AGAACATAGGTCTGCATTATATACACACCGACATGTGAACGAAGAATCTG
ATTGCATCGCCTCCTCCTTTTGTCCATGTTTTGTTTTTTTTTCCTTCGTG
ACGATACATAGGTACGCCGACATGTACAACAAGAACGGGAGGATCGGCAT
CTACACGCGGCAGGAGCGCGAGGCCATTATCGCACGCTTCAAGCGAAAAC
GGGGGCGCAGGGTTTGGAAGAAGAAGATCAGGTAC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig974:24168..25152+

>mRNA_E_fasciculatus_S2_contig974.17738.1 ID=mRNA_E_fasciculatus_S2_contig974.17738.1|Name=mRNA_E_fasciculatus_S2_contig974.17738.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=180bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig974:24168..25152+ (Ectocarpus fasciculatus EfasUO2)
GGGGGGGGGGGGGGAGACGGCGCTATCTGCGTCTCCCTGCCGCACATGCT
CTCGAAGTACGCCGACATGTACAACAAGAACGGGAGGATCGGCATCTACA
CGCGGCAGGAGCGCGAGGCCATTATCGCACGCTTCAAGCGAAAACGGGGG
CGCAGGGTTTGGAAGAAGAAGATCAGGTAC
back to top