mRNA_E_fasciculatus_S2_contig9739.17735.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9739.17735.1
Unique NamemRNA_E_fasciculatus_S2_contig9739.17735.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9739.17735.1 vs.
Match: Eukaryotic (translation initiation factor 6 n=2 Tax=PX clade TaxID=569578 RepID=A0A6H5KDJ3_9PHAE)

HSP 1 Score: 135 bits (341), Expect = 2.660e-38
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1 
Query:    1 LQIPLVAGTVNRGSDVLGAGVVANDWTAFCGLDTTSTEISVVESIFKLNEQGPSNIVNSMRSSLIDSLT 207
            LQIPLVAGTVNRGSDVLGAGVVANDWTAFCGLDTTSTEISVVESIFKLNEQGPSNIVNSMRSSLIDSLT
Sbjct:  177 LQIPLVAGTVNRGSDVLGAGVVANDWTAFCGLDTTSTEISVVESIFKLNEQGPSNIVNSMRSSLIDSLT 245
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BLAST of mRNA_E_fasciculatus_S2_contig9739.17735.1 vs.
Match: Eukaryotic (translation initiation factor 6 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LER7_ECTSI)

HSP 1 Score: 126 bits (316), Expect = 5.390e-36
Identity = 64/69 (92.75%), Postives = 67/69 (97.10%), Query Frame = 1 
Query:    1 LQIPLVAGTVNRGSDVLGAGVVANDWTAFCGLDTTSTEISVVESIFKLNEQGPSNIVNSMRSSLIDSLT 207
            LQIPL+AGTVNR SDVLGAGVVANDWTAFCGLDTTSTE SV++SIFKLNEQGPSNIVNSMRSSLIDSLT
Sbjct:   56 LQIPLMAGTVNRRSDVLGAGVVANDWTAFCGLDTTSTENSVLKSIFKLNEQGPSNIVNSMRSSLIDSLT 124
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BLAST of mRNA_E_fasciculatus_S2_contig9739.17735.1 vs.
Match: Eukaryotic (translation initiation factor 6 n=1 Tax=Puma concolor TaxID=9696 RepID=A0A6P6IJQ8_PUMCO)

HSP 1 Score: 111 bits (278), Expect = 5.190e-30
Identity = 54/69 (78.26%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    1 LQIPLVAGTVNRGSDVLGAGVVANDWTAFCGLDTTSTEISVVESIFKLNEQGPSNIVNSMRSSLIDSLT 207
            LQ+PLVAGTVNRGS+V+ AG+V NDW AFCGLDTTSTE+SVVES+FKLNE  PS I  SMR SLIDSLT
Sbjct:   72 LQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSLIDSLT 140
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BLAST of mRNA_E_fasciculatus_S2_contig9739.17735.1 vs.
Match: Eukaryotic (translation initiation factor 6 n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4Y268_9CHLO)

HSP 1 Score: 114 bits (285), Expect = 6.980e-30
Identity = 53/68 (77.94%), Postives = 63/68 (92.65%), Query Frame = 1 
Query:    1 LQIPLVAGTVNRGSDVLGAGVVANDWTAFCGLDTTSTEISVVESIFKLNEQGPSNIVNSMRSSLIDSL 204
            LQ+PLVAGTVNRGSDV+GAG+VANDW+AFCGLDTTSTE+SV+ES+FKL +  PSNIV  MR+SLIDS+
Sbjct:  177 LQVPLVAGTVNRGSDVIGAGLVANDWSAFCGLDTTSTELSVIESVFKLRDSQPSNIVKEMRASLIDSM 244
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BLAST of mRNA_E_fasciculatus_S2_contig9739.17735.1 vs.
Match: Eukaryotic (translation initiation factor 6 n=1 Tax=Rousettus aegyptiacus TaxID=9407 RepID=A0A7J8DHZ8_ROUAE)

HSP 1 Score: 111 bits (278), Expect = 9.090e-30
Identity = 54/69 (78.26%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    1 LQIPLVAGTVNRGSDVLGAGVVANDWTAFCGLDTTSTEISVVESIFKLNEQGPSNIVNSMRSSLIDSLT 207
            LQ+PLVAGTVNRGS+V+ AG+V NDW AFCGLDTTSTE+SVVES+FKLNE  PS I  SMR SLIDSLT
Sbjct:   92 LQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVVESVFKLNEAQPSTIATSMRDSLIDSLT 160
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BLAST of mRNA_E_fasciculatus_S2_contig9739.17735.1 vs.
Match: Eukaryotic (translation initiation factor 6 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2BNU0_9STRA)

HSP 1 Score: 114 bits (285), Expect = 1.020e-29
Identity = 55/69 (79.71%), Postives = 62/69 (89.86%), Query Frame = 1 
Query:    1 LQIPLVAGTVNRGSDVLGAGVVANDWTAFCGLDTTSTEISVVESIFKLNEQGPSNIVNSMRSSLIDSLT 207
            LQ+PLVAGTVNRGSDVLGAG+V NDWTAF GLDTTSTE+SV+E+IFKL EQGPS IV  +RSSL+D LT
Sbjct:  194 LQVPLVAGTVNRGSDVLGAGMVVNDWTAFTGLDTTSTEVSVIEAIFKLQEQGPSAIVTDLRSSLLDQLT 262
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BLAST of mRNA_E_fasciculatus_S2_contig9739.17735.1 vs.
Match: Eukaryotic (translation initiation factor 6 n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D8K6_9STRA)

HSP 1 Score: 113 bits (283), Expect = 1.390e-29
Identity = 56/68 (82.35%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:    1 LQIPLVAGTVNRGSDVLGAGVVANDWTAFCGLDTTSTEISVVESIFKLNEQGPSNIVNSMRSSLIDSL 204
            LQIPLVAGTVNRGSDVLGAG+VANDW AFCGLDTTSTEISVVESIFKL +  P N+V ++R+SLIDSL
Sbjct:  177 LQIPLVAGTVNRGSDVLGAGLVANDWAAFCGLDTTSTEISVVESIFKLQDNMPVNVVKTLRTSLIDSL 244
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BLAST of mRNA_E_fasciculatus_S2_contig9739.17735.1 vs.
Match: eukaryotic (translation initiation factor 6 n=1 Tax=Eurypyga helias TaxID=54383 RepID=UPI00052859DF)

HSP 1 Score: 110 bits (275), Expect = 1.570e-29
Identity = 53/69 (76.81%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    1 LQIPLVAGTVNRGSDVLGAGVVANDWTAFCGLDTTSTEISVVESIFKLNEQGPSNIVNSMRSSLIDSLT 207
            LQ+PLVAGTVNRGS+V+ AG+V NDW AFCGLDTTSTE+SV+ESIFKLNE  PS I  +MR SLIDSLT
Sbjct:   74 LQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVIESIFKLNEAQPSTIATNMRDSLIDSLT 142
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9739.17735.1 vs.
Match: Eukaryotic (translation initiation factor 6 n=23 Tax=Archosauria TaxID=8492 RepID=A0A3Q0HJL8_ALLSI)

HSP 1 Score: 111 bits (278), Expect = 1.740e-29
Identity = 54/69 (78.26%), Postives = 60/69 (86.96%), Query Frame = 1 
Query:    1 LQIPLVAGTVNRGSDVLGAGVVANDWTAFCGLDTTSTEISVVESIFKLNEQGPSNIVNSMRSSLIDSLT 207
            LQ+PLVAGTVNRGS+V+ AG+V NDW AFCGLDTTSTE+SV+ESIFKLNE  PS I  SMR SLIDSLT
Sbjct:  116 LQVPLVAGTVNRGSEVIAAGMVVNDWCAFCGLDTTSTELSVIESIFKLNEAQPSTIATSMRDSLIDSLT 184
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9739.17735.1 vs.
Match: Eukaryotic (translation initiation factor 6 n=2 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8R476_SELML)

HSP 1 Score: 113 bits (282), Expect = 1.960e-29
Identity = 53/68 (77.94%), Postives = 62/68 (91.18%), Query Frame = 1 
Query:    1 LQIPLVAGTVNRGSDVLGAGVVANDWTAFCGLDTTSTEISVVESIFKLNEQGPSNIVNSMRSSLIDSL 204
            LQ+PLVAGTVNRGSDV+GAG++ NDWTAFCGLDTT+TE+SVVES+FKL E  PS IVN MR+SLID+L
Sbjct:  177 LQVPLVAGTVNRGSDVIGAGLIVNDWTAFCGLDTTTTELSVVESVFKLRESQPSAIVNEMRASLIDTL 244
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9739.17735.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Eukaryotic2.660e-38100.00translation initiation factor 6 n=2 Tax=PX clade T... [more]
Eukaryotic5.390e-3692.75translation initiation factor 6 n=1 Tax=Ectocarpus... [more]
Eukaryotic5.190e-3078.26translation initiation factor 6 n=1 Tax=Puma conco... [more]
Eukaryotic6.980e-3077.94translation initiation factor 6 n=1 Tax=Trebouxia ... [more]
Eukaryotic9.090e-3078.26translation initiation factor 6 n=1 Tax=Rousettus ... [more]
Eukaryotic1.020e-2979.71translation initiation factor 6 n=1 Tax=Dictyocha ... [more]
Eukaryotic1.390e-2982.35translation initiation factor 6 n=1 Tax=Nannochlor... [more]
eukaryotic1.570e-2976.81translation initiation factor 6 n=1 Tax=Eurypyga h... [more]
Eukaryotic1.740e-2978.26translation initiation factor 6 n=23 Tax=Archosaur... [more]
Eukaryotic1.960e-2977.94translation initiation factor 6 n=2 Tax=Selaginell... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9739contigE_fasciculatus_S2_contig9739:5472..5681 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score127.9
Seed ortholog evalue1.9e-27
Seed eggNOG ortholog2880.D8LER7
Preferred nameEIF6
Model size210
KEGG koko:K03264,ko:K03440
KEGG TC1.A.6.1.4,1.A.6.2,1.A.6.4,1.A.6.5
KEGG Pathwayko03008,map03008
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000054,GO:0000460,GO:0000463,GO:0000466,GO:0000470,GO:0001101,GO:0002682,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003743,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005638,GO:0005652,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0005856,GO:0005882,GO:0006109,GO:0006110,GO:0006139,GO:0006140,GO:0006364,GO:0006396,GO:0006403,GO:0006405,GO:0006412,GO:0006413,GO:0006417,GO:0006518,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007275,GO:0008104,GO:0008135,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009737,GO:0009790,GO:0009791,GO:0009793,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009894,GO:0009987,GO:0010033,GO:0010154,GO:0010243,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010565,GO:0010604,GO:0010605,GO:0010608,GO:0010628,GO:0010629,GO:0015031,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016072,GO:0016441,GO:0016458,GO:0017148,GO:0019216,GO:0019217,GO:0019219,GO:0019220,GO:0019222,GO:0019538,GO:0022414,GO:0022607,GO:0022613,GO:0022618,GO:0030684,GO:0030687,GO:0030808,GO:0030811,GO:0031047,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031329,GO:0031503,GO:0031974,GO:0031981,GO:0032268,GO:0032269,GO:0032270,GO:0032501,GO:0032502,GO:0032868,GO:0032870,GO:0032991,GO:0033036,GO:0033750,GO:0033993,GO:0034248,GO:0034249,GO:0034250,GO:0034399,GO:0034470,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034660,GO:0035194,GO:0035195,GO:0035278,GO:0040029,GO:0040033,GO:0042221,GO:0042254,GO:0042255,GO:0042256,GO:0042273,GO:0042304,GO:0042325,GO:0042886,GO:0043021,GO:0043022,GO:0043023,GO:0043043,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043434,GO:0043467,GO:0043470,GO:0043603,GO:0043604,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0044877,GO:0045111,GO:0045184,GO:0045595,GO:0045637,GO:0045652,GO:0045727,GO:0045974,GO:0046483,GO:0046890,GO:0046907,GO:0048316,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048608,GO:0048731,GO:0048856,GO:0050657,GO:0050658,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051168,GO:0051169,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051193,GO:0051196,GO:0051234,GO:0051236,GO:0051239,GO:0051246,GO:0051247,GO:0051248,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051716,GO:0060255,GO:0061458,GO:0062012,GO:0065003,GO:0065007,GO:0070013,GO:0070727,GO:0070887,GO:0070925,GO:0071166,GO:0071215,GO:0071229,GO:0071310,GO:0071396,GO:0071426,GO:0071428,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097305,GO:0097306,GO:0099080,GO:0099081,GO:0099512,GO:0099513,GO:1900371,GO:1900542,GO:1901360,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901652,GO:1901698,GO:1901700,GO:1901701,GO:1902626,GO:1903578,GO:1903706,GO:1990904,GO:2000026,GO:2000112,GO:2000113,GO:2000377,GO:2001169
Exons1
EggNOG free text desc.mature ribosome assembly
EggNOG OGsCOG1976@1,KOG3185@2759
Ec32 ortholog descriptionTranslation initiation factor IF6
Ec32 orthologEc-26_000880.1
Cds size210
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03009,ko03012,ko04040
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842618.102709-CDS-E_fasciculatus_S2_contig9739:5471..56811696842618.102709-CDS-E_fasciculatus_S2_contig9739:5471..5681Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9739 5472..5681 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9739.17735.1prot_E_fasciculatus_S2_contig9739.17735.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9739 5472..5681 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9739.17735.1

>prot_E_fasciculatus_S2_contig9739.17735.1 ID=prot_E_fasciculatus_S2_contig9739.17735.1|Name=mRNA_E_fasciculatus_S2_contig9739.17735.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=70bp
LQIPLVAGTVNRGSDVLGAGVVANDWTAFCGLDTTSTEISVVESIFKLNE
QGPSNIVNSMRSSLIDSLT*
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mRNA from alignment at E_fasciculatus_S2_contig9739:5472..5681-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9739.17735.1 ID=mRNA_E_fasciculatus_S2_contig9739.17735.1|Name=mRNA_E_fasciculatus_S2_contig9739.17735.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=210bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9739:5472..5681- (Ectocarpus fasciculatus EfasUO2)
CTCCAGATCCCATTAGTGGCCGGAACAGTCAACAGAGGGTCTGACGTGCT
AGGAGCGGGGGTGGTCGCTAACGACTGGACGGCGTTTTGCGGGCTGGACA
CGACATCCACGGAGATCAGCGTCGTAGAATCCATCTTCAAGCTCAACGAG
CAGGGGCCCTCCAACATCGTCAACAGCATGCGAAGCTCTCTCATCGACTC
CCTGACATGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9739:5472..5681-

>mRNA_E_fasciculatus_S2_contig9739.17735.1 ID=mRNA_E_fasciculatus_S2_contig9739.17735.1|Name=mRNA_E_fasciculatus_S2_contig9739.17735.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=210bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9739:5472..5681- (Ectocarpus fasciculatus EfasUO2)
CTCCAGATCCCATTAGTGGCCGGAACAGTCAACAGAGGGTCTGACGTGCT
AGGAGCGGGGGTGGTCGCTAACGACTGGACGGCGTTTTGCGGGCTGGACA
CGACATCCACGGAGATCAGCGTCGTAGAATCCATCTTCAAGCTCAACGAG
CAGGGGCCCTCCAACATCGTCAACAGCATGCGAAGCTCTCTCATCGACTC
CCTGACATGA
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