mRNA_E_fasciculatus_S2_contig9731.17730.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9731.17730.1 vs.
Match: Exportin-T ((Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV38_9PHAE) HSP 1 Score: 308 bits (789), Expect = 3.250e-101 Identity = 160/184 (86.96%), Postives = 164/184 (89.13%), Query Frame = 1
Query: 19 QATRYCEEVKGSQDGWRLALELFRVTVRPEARFFCLGCLQDALGARAGARRRVESQHDRFLIREAVMGWLAQVGGGGGAELDAQETFIRTKVAVVLALLVKSDYPETWTDAFDQLRSVLVVGSSSGGRSAAA--------------ARAHVELYLRVLCALDEEVVSFHVDRSREEADHNSLIK 528
QATRYCEEVKGSQDGWRLALELFRVTVRPEARFFCLGCLQDALGARAGARRRVES+HDRFLIREAVMGWL QVGGGGGAELDAQETFIRTKVAVVLALLVKSDYPE+WTDAF+QLRSVLVVGSS+ AA ARAHVELYLRVLCALDEEVVSFHVDRSREEADHNSLIK
Sbjct: 29 QATRYCEEVKGSQDGWRLALELFRVTVRPEARFFCLGCLQDALGARAGARRRVESKHDRFLIREAVMGWLTQVGGGGGAELDAQETFIRTKVAVVLALLVKSDYPESWTDAFEQLRSVLVVGSSNCSGDAAVXXXXXXXXXXXXXXARAHVELYLRVLCALDEEVVSFHVDRSREEADHNSLIK 212
BLAST of mRNA_E_fasciculatus_S2_contig9731.17730.1 vs.
Match: Exportin-T (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNT8_ECTSI) HSP 1 Score: 307 bits (786), Expect = 9.340e-95 Identity = 160/183 (87.43%), Postives = 161/183 (87.98%), Query Frame = 1
Query: 19 QATRYCEEVKGSQDGWRLALELFRVTVRPEARFFCLGCLQDALGARAGARRRVESQHDRFLIREAVMGWLAQVGGGGGAELDAQETFIRTKVAVVLALLVKSDYPETWTDAFDQLRSVLVVGSSSGGRSAAA-------------ARAHVELYLRVLCALDEEVVSFHVDRSREEADHNSLIK 528
QATRYCEEVKGSQDGWRLALELFRVTVRPEARFFCLGCLQDALGARAGARRRVESQHDRFLIREAVMGWL QVGGGGGAELDAQETFIRTKVAVVLALLVKSDYPETWTDAF+QLRSVLVVGSS ARAHVELYLRVLCALDEEVVSFHVDRSREEADHNSLIK
Sbjct: 29 QATRYCEEVKGSQDGWRLALELFRVTVRPEARFFCLGCLQDALGARAGARRRVESQHDRFLIREAVMGWLTQVGGGGGAELDAQETFIRTKVAVVLALLVKSDYPETWTDAFEQLRSVLVVGSSXXXXXXXXXXXXXXXXXXXXXARAHVELYLRVLCALDEEVVSFHVDRSREEADHNSLIK 211
BLAST of mRNA_E_fasciculatus_S2_contig9731.17730.1 vs.
Match: Exportin-T (n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAL0_9STRA) HSP 1 Score: 147 bits (372), Expect = 7.670e-38 Identity = 82/171 (47.95%), Postives = 108/171 (63.16%), Query Frame = 1
Query: 16 QQATRYCEEVKGSQDGWRLALELFRVTVRPEARFFCLGCLQDALGARAGARRRVESQHDRFLIREAVMGWLAQVGGGGGAELDAQETFIRTKVAVVLALLVKSDYPETWTDAFDQLRSVLVVGSSSGGRSAAAARAHVELYLRVLCALDEEVVSFHVDRSREEADHNSLIK 528
QQA+++C+EVK S +GW +AL+LF T RPEARF+ L LQDALGAR GA R+ R +RE ++GWL G L E +I TKV VVLALL+++D+PE W AF QL ++L G AHV L+LR L A+DE+VV F+ RS EE + N+L+K
Sbjct: 34 QQASQFCDEVKASPEGWVVALQLFSTTTRPEARFYALMVLQDALGARPGAACRLTDPEHRQRVRECLLGWLTSPG----VALADVEKYIVTKVGVVLALLLRADFPERWPHAFTQLAALLPRGP-----------AHVGLFLRFLGAVDEDVVRFNAQRSPEEVERNTLVK 189
BLAST of mRNA_E_fasciculatus_S2_contig9731.17730.1 vs.
Match: Exportin-T (n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XP74_9STRA) HSP 1 Score: 112 bits (281), Expect = 1.270e-25 Identity = 69/171 (40.35%), Postives = 98/171 (57.31%), Query Frame = 1
Query: 16 QQATRYCEEVKGSQDGWRLALELFRVTVRPEARFFCLGCLQDALGARAGARRRVESQHDRFLIREAVMGWLAQVGGGGGAELDAQETFIRTKVAVVLALLVKSDYPETWTDAFDQLRSVLVVGSSSGGRSAAAARAHVELYLRVLCALDEEVVSFHVDRSREEADHNSLIK 528
QQA R+C VK S DGWRLALELF + E +F+ L LQ+AL A+ A V ++ +R A++ WL + A ++ + +++TK+AVV+ LL+K DYP W AF +L ++L G+ A VE+Y RVL A++EE+V F RS EA N IK
Sbjct: 33 QQAERFCASVKASADGWRLALELFEFSEHEEVKFYALQALQEAL-AKGVADDAVAAR-----VRAALLAWLRE----NAAFVERKAPYLKTKLAVVVTLLIKRDYPARWPSAFAELLALLPQGA-----------AMVEMYFRVLVAINEEIVEFDAQRSPAEAAANMRIK 182
BLAST of mRNA_E_fasciculatus_S2_contig9731.17730.1 vs.
Match: Exportin-T ((Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WTQ5_9STRA) HSP 1 Score: 105 bits (261), Expect = 3.340e-25 Identity = 61/170 (35.88%), Postives = 94/170 (55.29%), Query Frame = 1
Query: 19 QATRYCEEVKGSQDGWRLALELFRVTVRPEARFFCLGCLQDALGARAGARRRVESQHDRFLIREAVMGWLAQVGGGGGAELDAQETFIRTKVAVVLALLVKSDYPETWTDAFDQLRSVLVVGSSSGGRSAAAARAHVELYLRVLCALDEEVVSFHVDRSREEADHNSLIK 528
QA +C VK S DGWR L+LF + + +F+ L LQ+AL G V IR ++ WL A ++++ +++TK+AVV+ LL+K DYP+ W+ AF +L ++L G+S VE+Y R+L A++EE+V F R+++EA HN IK
Sbjct: 33 QAESFCGSVKSSVDGWRYELQLFEHSQHEQVKFYALQALQEALTRGVGDDVAV-------AIRSELLNWLQT----HVAYVESKAPYLKTKLAVVVTLLIKRDYPDRWSTAFTELLALLPQGASI-----------VEMYFRILLAINEEIVEFDAQRTQQEAAHNMRIK 180
BLAST of mRNA_E_fasciculatus_S2_contig9731.17730.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FDJ6_PYTOL) HSP 1 Score: 105 bits (263), Expect = 3.290e-23 Identity = 60/170 (35.29%), Postives = 91/170 (53.53%), Query Frame = 1
Query: 19 QATRYCEEVKGSQDGWRLALELFRVTVRPEARFFCLGCLQDALGARAGARRRVESQHDRFLIREAVMGWLAQVGGGGGAELDAQETFIRTKVAVVLALLVKSDYPETWTDAFDQLRSVLVVGSSSGGRSAAAARAHVELYLRVLCALDEEVVSFHVDRSREEADHNSLIK 528
QA YC VK S GWRL LELF + E +F+ L +Q+AL + + IR ++ WL A ++ + F++TK+AVV+ +L+K DYP+ W AF +L ++L +G+S VE+Y R+L A++EE+V F R++ EA N IK
Sbjct: 35 QAETYCNAVKASSTGWRLCLELFEYSEHQEVKFYALQAIQEAL------TKGIADDAVTMQIRSELLAWLR----ANVAFVEGKAPFLKTKLAVVITVLIKRDYPDRWPTAFHELLALLPMGASM-----------VEMYFRILTAINEEIVEFDATRTQAEAAANMRIK 183
BLAST of mRNA_E_fasciculatus_S2_contig9731.17730.1 vs.
Match: Exportin-T (n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BIY3_PYTIN) HSP 1 Score: 105 bits (261), Expect = 6.110e-23 Identity = 58/170 (34.12%), Postives = 95/170 (55.88%), Query Frame = 1
Query: 19 QATRYCEEVKGSQDGWRLALELFRVTVRPEARFFCLGCLQDALGARAGARRRVESQHDRFLIREAVMGWLAQVGGGGGAELDAQETFIRTKVAVVLALLVKSDYPETWTDAFDQLRSVLVVGSSSGGRSAAAARAHVELYLRVLCALDEEVVSFHVDRSREEADHNSLIK 528
QA +C+ VK S GWR LELF ++ + +F+ L LQ+ L + +ES+ + A++ W+ G A ++ + +++TK+AVV+ LL+K DYP W AF +L ++L +G+S VE+Y R+L A++EE+V F +R++ EA N IK
Sbjct: 44 QAESFCDRVKASPTGWRACLELFEMSAHAQVKFYALQALQEML------TKGIESEAVTAEMHTALLAWMR----GNVAYIEREAPYLKTKLAVVITLLIKDDYPYRWPTAFTELIALLPLGASM-----------VEMYFRILIAINEEIVEFDANRTQLEAAANMRIK 192
BLAST of mRNA_E_fasciculatus_S2_contig9731.17730.1 vs.
Match: Exportin-T (n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X0X9_GLOUD) HSP 1 Score: 103 bits (257), Expect = 2.100e-22 Identity = 62/170 (36.47%), Postives = 94/170 (55.29%), Query Frame = 1
Query: 19 QATRYCEEVKGSQDGWRLALELFRVTVRPEARFFCLGCLQDALGARAGARRRVESQHDRFLIREAVMGWLAQVGGGGGAELDAQETFIRTKVAVVLALLVKSDYPETWTDAFDQLRSVLVVGSSSGGRSAAAARAHVELYLRVLCALDEEVVSFHVDRSREEADHNSLIK 528
QA +C +K S DGWR LELF + E +F+ L LQ+AL G V +Q IR ++ WL + + ++ + +++TK+AVV+ LL+K DYP+ W AF +L ++L G+S VE+Y R+L A++EE+V F RS+ EA+ N IK
Sbjct: 34 QAESFCNSIKASVDGWRYELELFEFSEHQEVKFYALQALQEALVK--GVEDVVSAQ-----IRTELLTWLQE----NVSFVENKAPYLKTKLAVVITLLIKRDYPDRWPTAFFELMALLPKGASM-----------VEMYFRILVAINEEIVEFDAQRSQAEANANMRIK 181
BLAST of mRNA_E_fasciculatus_S2_contig9731.17730.1 vs.
Match: Exportin-T (n=21 Tax=Phytophthora TaxID=4783 RepID=D0NEB4_PHYIT) HSP 1 Score: 101 bits (252), Expect = 9.820e-22 Identity = 57/169 (33.73%), Postives = 91/169 (53.85%), Query Frame = 1
Query: 22 ATRYCEEVKGSQDGWRLALELFRVTVRPEARFFCLGCLQDALGARAGARRRVESQHDRFLIREAVMGWLAQVGGGGGAELDAQETFIRTKVAVVLALLVKSDYPETWTDAFDQLRSVLVVGSSSGGRSAAAARAHVELYLRVLCALDEEVVSFHVDRSREEADHNSLIK 528
A +C VK DGWR L+LF + + +F+ L LQ+AL + + +R ++ WL A ++++ F++TK+AVV+ LL+K DYP+ W AF +L ++L G+S VE+Y R+L A++EE+V F R+++EA HN IK
Sbjct: 14 AFHFCNAVKAQADGWRAELQLFEHSEHEQVKFYALQALQEALA-------KGVADDVALAVRVELLAWLQS----HVAYVESKSPFLKTKLAVVITLLIKRDYPDRWPTAFTELLALLPQGASI-----------VEMYFRILQAINEEIVEFDAQRTQQEAAHNMRIK 160
BLAST of mRNA_E_fasciculatus_S2_contig9731.17730.1 vs.
Match: Exportin-T ((Fragment) n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UNV2_9STRA) HSP 1 Score: 100 bits (250), Expect = 1.030e-21 Identity = 58/170 (34.12%), Postives = 90/170 (52.94%), Query Frame = 1
Query: 19 QATRYCEEVKGSQDGWRLALELFRVTVRPEARFFCLGCLQDALGARAGARRRVESQHDRFLIREAVMGWLAQVGGGGGAELDAQETFIRTKVAVVLALLVKSDYPETWTDAFDQLRSVLVVGSSSGGRSAAAARAHVELYLRVLCALDEEVVSFHVDRSREEADHNSLIK 528
QA +C VK DGWR L+LF + + +F+ L LQ+AL V +R ++ WL A ++ + +++TK+AVV+ LL+K DYP+ W AF +L ++L G+S VE+Y R+L A++EE+V F R+++EA HN IK
Sbjct: 33 QAESFCNAVKSQADGWRAELQLFEHSEHEQVKFYALQALQEALTGGVADDISV-------AVRVELLAWLQS----HVAYVETKAPYLKTKLAVVITLLIKRDYPDRWPTAFTELLALLPQGASI-----------VEMYFRILLAINEEIVEFDAQRTQQEAAHNMRIK 180 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9731.17730.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9731.17730.1 >prot_E_fasciculatus_S2_contig9731.17730.1 ID=prot_E_fasciculatus_S2_contig9731.17730.1|Name=mRNA_E_fasciculatus_S2_contig9731.17730.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=179bp HVSPTQQATRYCEEVKGSQDGWRLALELFRVTVRPEARFFCLGCLQDALGback to top mRNA from alignment at E_fasciculatus_S2_contig9731:127..1332- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9731.17730.1 ID=mRNA_E_fasciculatus_S2_contig9731.17730.1|Name=mRNA_E_fasciculatus_S2_contig9731.17730.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1206bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9731:127..1332- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9731:127..1332- >mRNA_E_fasciculatus_S2_contig9731.17730.1 ID=mRNA_E_fasciculatus_S2_contig9731.17730.1|Name=mRNA_E_fasciculatus_S2_contig9731.17730.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=537bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9731:127..1332- (Ectocarpus fasciculatus EfasUO2)back to top |