mRNA_E_fasciculatus_S2_contig9729.17729.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9729.17729.1
Unique NamemRNA_E_fasciculatus_S2_contig9729.17729.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9729.17729.1 vs.
Match: Peptide-methionine ((S)-S-oxide reductase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSE2_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 6.230e-39
Identity = 87/119 (73.11%), Postives = 93/119 (78.15%), Query Frame = -2 
Query:    3 HPFPRANAVSPATPMVANVSPRGAFVSFGGIKGIFRQHNAGMTRLSCSVGAAESPPPLRTALLIRDTSDAASACREEIVAGMLETQGFEVTALSGAEEAAQLFAALSGGALKLTVLFDL 359
            H FP A  VSPAT +V NV PRGA +S G  + IFR+H A MTRLSCSV A  + P  RTALLIRDTSDAASA REEIVAGMLETQGFEVTAL G EEAAQL A LSG AL+LTVLFDL
Sbjct:    2 HHFPSAIVVSPATSLVVNVFPRGASLSLGWTRDIFRRH-AAMTRLSCSVDAVGNLPHPRTALLIRDTSDAASASREEIVAGMLETQGFEVTALPGVEEAAQLLAGLSGEALQLTVLFDL 119
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9729.17729.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Peptide-methionine6.230e-3973.11(S)-S-oxide reductase n=1 Tax=Ectocarpus sp. CCAP ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9729contigE_fasciculatus_S2_contig9729:4507..4867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size362
Hectar predicted targeting categoryother localisation
Exons1
Cds size360
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842617.4968336-CDS-E_fasciculatus_S2_contig9729:4506..48661696842617.4968336-CDS-E_fasciculatus_S2_contig9729:4506..4866Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9729 4507..4866 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9729.17729.1prot_E_fasciculatus_S2_contig9729.17729.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9729 4507..4866 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9729.17729.1

>prot_E_fasciculatus_S2_contig9729.17729.1 ID=prot_E_fasciculatus_S2_contig9729.17729.1|Name=mRNA_E_fasciculatus_S2_contig9729.17729.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=120bp
DRSNSTVSFSAPPDSAAKSWAASSAPDSAVTSKPCVSSMPATISSLQALA
ASLVSLIRRAVRRGGGLSAAPTEHESLVIPALCWRKMPLIPPKLTNAPRG
DTFATIGVAGDTAFARGKGC
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mRNA from alignment at E_fasciculatus_S2_contig9729:4507..4867+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9729.17729.1 ID=mRNA_E_fasciculatus_S2_contig9729.17729.1|Name=mRNA_E_fasciculatus_S2_contig9729.17729.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=361bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9729:4507..4867+ (Ectocarpus fasciculatus EfasUO2)
GATAGATCAAACAGTACGGTCAGCTTCAGTGCCCCGCCTGACAGTGCCGC
AAAAAGTTGGGCCGCTTCTTCCGCCCCCGACAGCGCGGTAACCTCGAAGC
CCTGCGTTTCGAGCATGCCAGCGACTATCTCCTCTCTGCAGGCGCTTGCG
GCATCGCTTGTGTCCCTGATCAGGAGAGCTGTTCGGAGAGGAGGAGGACT
CTCGGCGGCGCCAACAGAGCATGAAAGCCTAGTCATCCCTGCGTTATGTT
GGCGGAAAATGCCCTTGATCCCGCCGAAACTGACGAACGCCCCACGAGGA
GACACGTTCGCGACCATCGGGGTCGCTGGTGATACCGCATTCGCACGAGG
GAAGGGGTGCA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9729:4507..4867+

>mRNA_E_fasciculatus_S2_contig9729.17729.1 ID=mRNA_E_fasciculatus_S2_contig9729.17729.1|Name=mRNA_E_fasciculatus_S2_contig9729.17729.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=360bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9729:4507..4867+ (Ectocarpus fasciculatus EfasUO2)
GATAGATCAAACAGTACGGTCAGCTTCAGTGCCCCGCCTGACAGTGCCGC
AAAAAGTTGGGCCGCTTCTTCCGCCCCCGACAGCGCGGTAACCTCGAAGC
CCTGCGTTTCGAGCATGCCAGCGACTATCTCCTCTCTGCAGGCGCTTGCG
GCATCGCTTGTGTCCCTGATCAGGAGAGCTGTTCGGAGAGGAGGAGGACT
CTCGGCGGCGCCAACAGAGCATGAAAGCCTAGTCATCCCTGCGTTATGTT
GGCGGAAAATGCCCTTGATCCCGCCGAAACTGACGAACGCCCCACGAGGA
GACACGTTCGCGACCATCGGGGTCGCTGGTGATACCGCATTCGCACGAGG
GAAGGGGTGC
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