mRNA_E_fasciculatus_S2_contig970.17707.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig970.17707.1
Unique NamemRNA_E_fasciculatus_S2_contig970.17707.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig970.17707.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG6_ECTSI)

HSP 1 Score: 315 bits (807), Expect = 2.860e-107
Identity = 172/181 (95.03%), Postives = 176/181 (97.24%), Query Frame = 1 
Query:  130 MGRIQAEIELEQLQREESGSAMAARNQVRTVTAGWLVGVILGWXXXXXXXCLFSPALGFMMVLPFVSGGVIGGLVYSQLRDKMRSLSRRPMPVEQEHQQPRGRSRSEDKQEFLRQLQGRSDPSATYLHLGTDDGTLPSGSFLRRVALGATHVLVRSALGVTADATCAMLGLGRGGGRTQGR 672
            MGRIQAEIELEQLQREESGSAM ARNQVRTVTAGWLVGVILGWXXXXXXXCLFSPALGFMMVLPFVSGGVIGGLVYSQLRDK+RSLSRRPMP+EQEHQQPRGRSRSEDKQEFLRQLQGRSDPSATYLH+GTDD TLPSGSFLRRVALGATH+LVRSAL VTA A CAMLGLGRGGGRTQGR
Sbjct:    1 MGRIQAEIELEQLQREESGSAMTARNQVRTVTAGWLVGVILGWXXXXXXXCLFSPALGFMMVLPFVSGGVIGGLVYSQLRDKIRSLSRRPMPMEQEHQQPRGRSRSEDKQEFLRQLQGRSDPSATYLHMGTDDSTLPSGSFLRRVALGATHILVRSALDVTAAAACAMLGLGRGGGRTQGR 181
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BLAST of mRNA_E_fasciculatus_S2_contig970.17707.1 vs.
Match: Uncharacterized (protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X367_GLOUD)

HSP 1 Score: 53.9 bits (128), Expect = 3.940e-5
Identity = 39/130 (30.00%), Postives = 71/130 (54.62%), Query Frame = 1 
Query:   19 EEELTAQRDAAVSLCKDLQEKIR----SQAARYEARTEAAEMGRIQAEIELEQLQREESGSAMAARNQVRTVTAGWLVGVILGWXXXXXXXCLFS-PALGFMMVLPFVSGGVIGGLVYSQLRDKMRSLSR 393
            EEEL AQRDAA+++ K+LQ++++    S   ++E R   AE  R+ AE EL++++ E           +       ++G ++GW        LF  P +GF+M+LP ++ G + GL  ++ + ++ +  R
Sbjct:    4 EEELIAQRDAAIAVTKELQKQLQELRGSLEHKFERRALNAERLRMHAETELKRVRDERDWELKICNRVLYLSLFAGMIGAVVGWCFGLQVFLLFGQPLVGFLMILPGMAIGSLIGLAIAKTKVQLENRRR 133
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BLAST of mRNA_E_fasciculatus_S2_contig970.17707.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YFJ8_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 5.520e-5
Identity = 46/133 (34.59%), Postives = 70/133 (52.63%), Query Frame = 1 
Query:   19 EEELTAQRDAAVSLCKDLQEKIRSQAARYEARTE----AAEMGRIQAEIELEQLQREESGSAMAARNQVRTVTAGWLVGVI---LGWXXXXXXXCLFS-PALGFMMVLPFVSGGVIGGLVYSQLRDKMRSLSR 393
            EEELTAQRDAA+++ K+LQ ++    A  E R E     AE  R+ AE EL +++ E   SA   R   R +      GV+    GW        LF+ P +GF+++LP +  G + GL  ++ + ++ S  R
Sbjct:    4 EEELTAQRDAAIAVTKELQRQLVEVRADVERRLERRALTAERLRLHAEAELRRVRDE---SAWERRMHARVLYLSLFTGVLGALAGWCLGLQLLLLFNQPLVGFLLILPAMLFGGLVGLAIAKTKMQLESRQR 133
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig970.17707.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized2.860e-10795.03protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.940e-530.00protein n=1 Tax=Globisporangium ultimum (strain AT... [more]
Uncharacterized5.520e-534.59protein n=1 Tax=Pythium brassicum TaxID=1485010 Re... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig970contigE_fasciculatus_S2_contig970:5590..10941 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score61.6
Seed ortholog evalue5.3e-07
Seed eggNOG ortholog36331.EPrPI00000022512
Model size675
Hectar predicted targeting categorysignal anchor
Exons6
EggNOG free text desc.function. Source PGD
EggNOG OGs1MHVU@121069,2CF65@1,2S3HZ@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-16_003970.1
Cds size675
COG Functional cat.S
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig970.17707.1prot_E_fasciculatus_S2_contig970.17707.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig970 5590..10941 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842615.6561694-CDS-E_fasciculatus_S2_contig970:5589..57131696842615.6561694-CDS-E_fasciculatus_S2_contig970:5589..5713Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig970 5590..5713 -
1696842615.6671832-CDS-E_fasciculatus_S2_contig970:5984..61361696842615.6671832-CDS-E_fasciculatus_S2_contig970:5984..6136Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig970 5985..6136 -
1696842615.6771774-CDS-E_fasciculatus_S2_contig970:6374..64611696842615.6771774-CDS-E_fasciculatus_S2_contig970:6374..6461Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig970 6375..6461 -
1696842615.687548-CDS-E_fasciculatus_S2_contig970:7512..76801696842615.687548-CDS-E_fasciculatus_S2_contig970:7512..7680Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig970 7513..7680 -
1696842615.6959877-CDS-E_fasciculatus_S2_contig970:8110..81731696842615.6959877-CDS-E_fasciculatus_S2_contig970:8110..8173Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig970 8111..8173 -
1696842615.7042687-CDS-E_fasciculatus_S2_contig970:10860..109411696842615.7042687-CDS-E_fasciculatus_S2_contig970:10860..10941Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig970 10861..10941 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig970.17707.1

>prot_E_fasciculatus_S2_contig970.17707.1 ID=prot_E_fasciculatus_S2_contig970.17707.1|Name=mRNA_E_fasciculatus_S2_contig970.17707.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=225bp
MEGSIEEEELTAQRDAAVSLCKDLQEKIRSQAARYEARTEAAEMGRIQAE
IELEQLQREESGSAMAARNQVRTVTAGWLVGVILGWAAGFVLGCLFSPAL
GFMMVLPFVSGGVIGGLVYSQLRDKMRSLSRRPMPVEQEHQQPRGRSRSE
DKQEFLRQLQGRSDPSATYLHLGTDDGTLPSGSFLRRVALGATHVLVRSA
LGVTADATCAMLGLGRGGGRTQGR*
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mRNA from alignment at E_fasciculatus_S2_contig970:5590..10941-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig970.17707.1 ID=mRNA_E_fasciculatus_S2_contig970.17707.1|Name=mRNA_E_fasciculatus_S2_contig970.17707.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5352bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig970:5590..10941- (Ectocarpus fasciculatus EfasUO2)
ATGGAGGGGTCTATCGAAGAGGAAGAGCTCACCGCCCAGCGTGATGCAGC
AGTATCCCTATGTAAAGACCTACAGGAGAAGGTGCGCGCCTCTTCGTGTG
AATACAAAGAACAACGGAGAGAGTAGCAGGGTCTCACGGGTGGTGCTTTG
GGGGGAGCAAGTTTGGAGATGCAGGGAGCTCCGCATTGTGCGAGGCACAC
AGATGGGAATTGCAACGTGACATGCTGTAGCCATTTCAAACTTCAAACCA
CACATGACACATGACCAACGCAACGCAGAACTCTCTCACTCTCTCATATG
TACATCACCACACACGTTTTGCGTCTAGCAGTCTAGCAGTAGAATTTCCT
AGAATGTGTAGGCGATGCATGTTTTGCCGCAGGCAGAAGGATACGTACTG
CTGTACTACAGGAGTTGCCCCGTTGACAAAATGAGACGTCAGGACCATTT
CTGGAAAACTGCTGTAGATACATTGAAACAAAGTAGTCTGTGTTTGTAGG
AGTATGTACTGTAGTGCTCTGCTCGCACGTGAACAGACGAAGGGTTGAAA
TGGGGTACCTGAGGATGGACGTTTGCGGTGGTTCCCCATGAAAATAACCT
GCTGTGTACTCAAGGCGAAGTATGTACGATTCAATTTACAAGGAGGTTAC
CTCACGACTTCTCCGGAACCTTTCTGGTTTTTTATGGTGGGCTGCACCGT
TTACCACCGCCGATGACCATCGCATGAAGCACGACTCGCCATGAAACCCA
CCAAAACACCTCACAGGCTGTTCTTTGCGATCCCAAGCAGTTATCATGCC
GTCATTTTGGGTTGAACCGCAGAAAGGTAAGAAATGGCCATCGTATCTCA
AAACACACCATCGCGACCACCTTTTCAGCTCTCGGGCTCGCACTTCAACG
CAGGATTGCGCACTGGGAAGACCCCTATATCGTCTGTACTTTGGGATCTG
CGCTACGGCACTCGAATTGCAGGCAGACTGCAAACGTTGCCTAAAATCAC
CCAATTTTTGCTCTTATTTTCCGGCAGTGCAGCGGGGTGCCCCAAAAGCG
TAGTCGATAATTCGAGTGGCTCAGTTTTGGGTGCTTGGAGTTGAAAGCAG
GTCGGCGATGACGGGCCGTAGATGGGTAAAGATCGTTGTTTTATTCGGGG
CGTGGATGTGTTCGTCAGTTGATCGCGGCACCAAGTCACGCCATCACGCT
CAAACACCCAAAGAATCTCAATGAATCTACACCATTCCGTGTCACTCGCA
AGGAAAATGTACAGAAACTTCTCGTTCCTCCACCCCTCATCACTGCAATC
TCCGTAGACTAGATGTTTATGTTTCCCAAGATACCACCCGTCACACTAAG
CTACGAGTGTATCGAATGGTCTCGCCGCCTTTGCCTTCTCCCGGAGCTGC
TTCCTCTTCCCCTGCGTCGCTTCACTTCCTCATGGCACGTTGTGTCTGCA
GGCGACATTGTTCGGTTTCGAGTCTTCTAGGCATTAGTGAGCGTGTCAGT
GATGAGTGATGTTTGGTTCGCTTTTGTCAGCACAGAATCACAGTTCGCGT
CTTGGCCGACAGAGGCTTTGGCCGACAGCGGCGAGAGTAACACGTTCGTG
AGCAGTAGCGATAACATGTTCAACATTAATCTTGTCCCAGCAGGCAAGGA
GTACACCTCAGCAATCTCCCCTTGCCTGCTGGGCTAAGCGTTGTTGAACA
CGTTGTCGCTACTGCTCACGAACGTGTTACTCAAGCCGCTTTCGGCCCAA
AACCTCTCTCGACCAAGGCGCGAATCGTGATTCTGTGCTGAAAAAGCGAA
ACCACATCACTCACACGCTCACTACTGCCTACATCACAGGAAACCGAACT
AATCTCGCGTGCAGACACAAAACTTGCCGCAAGGAAGTGAAGCGACCCAG
GGGAAGAGGAACCATCTCCGGGAAAAGCGGGCGGCGGCGCTGTGGTGGTT
CCGGGTGGGGTGTAGATGAACGTCCGCGGTTGCGGTGCGGCAGCGGCCGC
AGGTACGGCGGGGGCTGGCGAGGGCGCCGCGTTGACCGAAGAACCCCCCC
CCAATGTCCGGCACCGATGTCCTCTTTTATTCGATAACGGTGCAGGCATA
AGACTACTGCAAAGCTGTCAGTGCTGACTACGTAGTCTAATGGTTTAGCC
GTTGACAAGCAATAGGCACGAATCGGGCACGATTCCCAGTCGGAACTGGA
ACACTTTTGTGGACCTGAATTCTTTACCAATGGCTAGGGGTCCGGCCCCG
GAGATCACTGATCCAGCTTGGAGGCCAAGATCCTTAGAATACATACGTAG
TTGGTAAAGACGAAGCACTAGACTACTTGCACAGCCAGCACTCATGGTGC
AGTAGTCGAATGGTACACCTTTATCGAATAAATCGTCCTTCATGATGACA
TATCTTCAGCAGTACCTCCAAACGATCAACAACCAAGAGCGTGGCCACAC
CGAGCGATCTTTAGACCCAGGATGCCCACTCGAAAGTTCGCCACAACCGC
TCGAACATTGGAAGACGTTATTTTCTTGGCGAACATCAGCGCCGACGGAG
CAGGGAACACGGTACCACCGGTTGAGCGGGTTCGCCGCTGGTTCCGCCGC
TGATATTGATGGCTTTTAGCTCAACACCGATACACCCTGCCCCGGCACCT
CTGGGGTCATGTCTCATCCTCCCCCCTCTCTCCACTTTGGATTCTGTACT
TCTCTGTTGCTCCTCTTTTGCCTGGGGAATGCGTTTCCGTACGTTTTTTG
CACAACACGACCGACCAGATTCGGTCCCAGGCCGCACGGTACGAGGCTCG
AACGGAAGCGGCAGAGATGGGCCGGATACAGGTAGGTCGCACACAAACAA
AGCAGGGGGGCAGTAGTAGCATCGTGGCGGAAGCGCGGGAAGCTGTGCTA
GATGCACCGCAGTAGGGCGGCCAACCACTTCGAGCCACATGCCCCCCGGC
GTACCTGTACGAGAACGTGCTAGCCTTGCGTCTTTCGCTGCCTTGACTAC
GATACAGCAGCAAACCGCAGTAGCTCACGCGGTTACGCCCATATATACGC
ATGCCACACAAGTAGTCTCCCAATTTGGTCCCGCTGAGATTGGAATTGCC
TGTTGTGTGCCCGTTAGCGCGGTTATGCTAGCCAGTGAAACGCACGTAGT
CTGGAGTTTTTCTGCGGACTGGAAGGCATTGTGTTGTCTCGCAAAGGGTG
ACGCCGTCTCATTGATTAGCCGCGGTCGACCATCCTCACCATGCAATCAC
ATCTGCTGCAGGCCGAGATTGAGTTAGAACAGCTGCAGCGGGAGGAGAGT
GGGAGCGCCATGGCCGCGAGGAACCAAGTCCGCACGGTAACGGCCGGGTG
GTTGGTGGGCGTGATCCTTGGGTGGGCCGCCGGCTTCGTCCTGGGGTGCC
TCTTCTCTCCCGCGCTCGGCTTCATGATGGTAATTTCTCCCTCACATAGT
GGGGACACACCGTATAATATCGCTTGATGGAGAAACTCCACTTCGGACAC
AGCCTTCTCCCCCTCCCCCCCCCAAGAAATCTTGTCGTATCCACGGAAAG
TATTCCTGATCTGGTTGTTAAATGCCAGCAGCACAGGAGAGTAGAGAGTT
CCTCTCGCGGATGTTCTCGCGACCACCCTTCCACAGTCCACTTGCCTCGA
GATTGGGAAGCCCCCTCCCTTCGTCCAAGCCAGTTTCAGGAAGTATCAAT
GCCCTCGTTTCGCGTTGATTGGATCGAGGCGCCGCCGTTGATATCTGCCC
GCCCTTGAAGAGACCTGATGCAAGACGAGTCCCACTTCCTTTATTGAGCA
CTTCCTTCGTTAGGCCCTGATTCAGTAATCCTATGACTGCTCGTTCCAAT
CAGTGTGTTTGGGTGGGGCTCCTGACAATGGGGAGGCGCTCGTTCGCGAA
CCTCGACAGTTGTGACTATTTTTCGGTGCTCCAGGCTGAGTGGATTGCGT
CCTGCACAAGGGCTTTCGAAGGCTTTATTCAACCAACAATTTCCGGCCCA
CAATTTCGCTCCTCTTCGACATGTGAAGCCGTTGCCCGTGCAATATTTGT
CACCCCACGAAAGTGCCGTCGTCCGCCTCACAAGCGTTTTCGTGGGTCAC
AGCTCGCGCTCACTAACGGCTTCCTCACCACCTTGCTGCGGCACTCGGCT
CGATGCACCTACAGTCTGTCTGGTAGATTGTGGAAAGCCCGAGGTACCCC
CATCCGTTCCCAGACTTGTAGATTGGGATGGGACAGGTTATGCCAATGCG
GCAGTGGGATTGGTTGGCCATTTTGAAGAGACAAAGAAACTGCTCAGTTC
ATACGCATACATACCTGTATTATGATGTGCAAATAGAACCGAAGTTCTTT
CTCAGTGTTGATATTTCCTTCCGAACCCAGACTCTCTAACGTAATATCAG
AAGTCAGTTGACACCTGCCCGACAACGAAGACGAGGTATGCATACAACAA
AAACACACGAGTCTCGTGCGGTCACAACAGGTTCTCCCGTTCGTGTCGGG
TGGGGTGATCGGCGGTCTGGTCTACTCGCAGCTCCGGGACAAGATGCGAT
CGCTGAGCCGACGGCCGGTGAGAACGCTACATAGCTATCATCGCGACAGC
GACTGAGAGCGACCTTTTATGTCGTTTACATGGCGGACGGTGGTGTTGAT
GTTAGTTGTCTTCGTCAAAGCCGTCGTCGTCGCTGTTGTTGTGACAGTAC
CACTGACGGTGCCCTGTTCACGCCCACCAAGCCAACTGTCTCCAACCGGT
TTGCTATCTGCACGTTTTGGCCCGTCCCTGACAAATATCAAAAATTTTGA
CACAGATGCCGGTGGAGCAGGAGCATCAGCAACCGAGAGGTCGAAGCAGA
TCTGAAGACAAGCAAGAGTTCTTGCGGCAGCTTCAGGGGCGGTCGGATCC
GTCTGCAACCTATCTACACCTGGGCACGGACGACGGCACCCTGCCCTCCG
GATCTTTGTGAGTATCTTCTGGCCTCGCGCTTGCCTCAACGCTCCTTGTT
CGATATGCACCGCTCTGCTTGCTTGCCATGTTGGCCTAGCGCGCATTCGG
TCACAATAATATCGTTTCGTATGCCCTTGACGCAGTTTGGCTCTGCAAAC
ACAGCGCCTCCGAAGTACCATGTCCCCCCAAAAACTGCTGCGCGAATGCG
ACTATTATAAGTTCTTCTCCGGTGCGACTCCCACTTCGTTTCAAAACGTT
TGCCTTCCATGGACCTTGTCTCGCGCAGCTTGCGAAGAGTCGCGCTGGGG
GCGACGCACGTGCTCGTGAGATCCGCGTTGGGTGTAACGGCCGACGCTAC
CTGCGCGATGCTGGGTCTCGGCAGAGGCGGCGGACGAACTCAAGGCCGAT
GA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig970:5590..10941-

>mRNA_E_fasciculatus_S2_contig970.17707.1 ID=mRNA_E_fasciculatus_S2_contig970.17707.1|Name=mRNA_E_fasciculatus_S2_contig970.17707.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=675bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig970:5590..10941- (Ectocarpus fasciculatus EfasUO2)
ATGGAGGGGTCTATCGAAGAGGAAGAGCTCACCGCCCAGCGTGATGCAGC
AGTATCCCTATGTAAAGACCTACAGGAGAAGATTCGGTCCCAGGCCGCAC
GGTACGAGGCTCGAACGGAAGCGGCAGAGATGGGCCGGATACAGGCCGAG
ATTGAGTTAGAACAGCTGCAGCGGGAGGAGAGTGGGAGCGCCATGGCCGC
GAGGAACCAAGTCCGCACGGTAACGGCCGGGTGGTTGGTGGGCGTGATCC
TTGGGTGGGCCGCCGGCTTCGTCCTGGGGTGCCTCTTCTCTCCCGCGCTC
GGCTTCATGATGGTTCTCCCGTTCGTGTCGGGTGGGGTGATCGGCGGTCT
GGTCTACTCGCAGCTCCGGGACAAGATGCGATCGCTGAGCCGACGGCCGA
TGCCGGTGGAGCAGGAGCATCAGCAACCGAGAGGTCGAAGCAGATCTGAA
GACAAGCAAGAGTTCTTGCGGCAGCTTCAGGGGCGGTCGGATCCGTCTGC
AACCTATCTACACCTGGGCACGGACGACGGCACCCTGCCCTCCGGATCTT
TCTTGCGAAGAGTCGCGCTGGGGGCGACGCACGTGCTCGTGAGATCCGCG
TTGGGTGTAACGGCCGACGCTACCTGCGCGATGCTGGGTCTCGGCAGAGG
CGGCGGACGAACTCAAGGCCGATGA
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