mRNA_E_fasciculatus_S2_contig970.17706.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig970.17706.1
Unique NamemRNA_E_fasciculatus_S2_contig970.17706.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig970.17706.1 vs.
Match: NB-ARC (and TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG5_ECTSI)

HSP 1 Score: 658 bits (1698), Expect = 4.960e-208
Identity = 321/367 (87.47%), Postives = 337/367 (91.83%), Query Frame = 3 
Query:  177 SGFEIG------GEWEPLAETLQAGENYLSRDGGIRLSVQHGSLSGPGPGPVRLHLATQLLSCKGQDYFTTTIVHCPPNHRFQEPLLLDFFLDDPTVRNGKGALKQVLKRYQILRKSHGEHGWQPLRREDISLVEDRDSTYLRAHVHHFTLFACCMKCDPSCGITWFNHTDKQGVLVHNDTNQQLLLVVLPTKYVAVCDKRHAVQLAVGGSLPGGEGIEVGGSFERNKRTEYVYFPQGEAPSSQDVLPWAQRQRVRLREVDCVERLLICSVSLVRGGALSTQTTPPSQSSPRQMAPVSTVPSGEGQYRVVKFYEDPIVKGSDGLVIHQSRLNVPPRDECYVRAKGVNLKHVAMVLAGLGEGNVEDGK 1259
            SGFE        GEWE L ETLQAGENY SRDGGIRLSVQHGSLSGPGPGPVRLHLATQLLSCKGQDYFTTTIVHCPP+HRFQEPLLLDFFLDDP VRNGKGALK+VLKRYQILR SHGEH WQPLRRED+ LVEDRDSTYLRAH+ HFT+F+CCMKCDP+CGITW NH+DKQGVLVHN++NQQL LVVLPTKYVAVCDKRHAVQLAVGGSLPGGEGIEVGG FERNKRTEYV+ PQGEAPS Q+VLPWAQ QR+RLREV CVERLLICS+S VRGG LSTQ TPPSQSSPRQM PVSTVPSGEGQYRVVKFYEDPIVKG DGLVIHQSRLNVPPRDEC VRAKGVNLKHVAMVLAGLGEG+ E+GK
Sbjct: 1962 SGFESKESAIDWGEWELLTETLQAGENYRSRDGGIRLSVQHGSLSGPGPGPVRLHLATQLLSCKGQDYFTTTIVHCPPDHRFQEPLLLDFFLDDPAVRNGKGALKKVLKRYQILRMSHGEHEWQPLRREDMFLVEDRDSTYLRAHIDHFTVFSCCMKCDPTCGITWLNHSDKQGVLVHNNSNQQLFLVVLPTKYVAVCDKRHAVQLAVGGSLPGGEGIEVGGRFERNKRTEYVWLPQGEAPSGQEVLPWAQEQRLRLREVGCVERLLICSLSPVRGGPLSTQATPPSQSSPRQMTPVSTVPSGEGQYRVVKFYEDPIVKGGDGLVIHQSRLNVPPRDECCVRAKGVNLKHVAMVLAGLGEGSGEEGK 2328
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BLAST of mRNA_E_fasciculatus_S2_contig970.17706.1 vs.
Match: G (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KA06_9PHAE)

HSP 1 Score: 554 bits (1427), Expect = 1.610e-182
Identity = 270/354 (76.27%), Postives = 304/354 (85.88%), Query Frame = 3 
Query:  192 GGEWEPLAETLQAGENYLSRDGGIRLSVQHGSLSGPGPGPVRLHLATQLLSCKGQDYFTTTIVHCPPNHRFQEPLLLDFFLDDPTVRNGKGALKQVLKRYQILRKSHGEHGWQPLRREDISLVEDRDSTYLRAHVHHFTLFACCMKCDPSCGITWFNHTDKQGVLVHNDTNQQLLLVVLPTKYVAVCDKRHAVQLAVGGSLPGGEGIEVGGSFERNKRTEYVYFPQGEAPSSQDVLPWAQRQRVRLREVDCVERLLICSVSLVRGGALSTQTTPPSQSSPRQMAPVSTVPSGEGQYRVVKFYEDPIVKGSDGLVIHQSRLNVPPRDECYVRAKGVNLKHVAMVLAGLGEGNVED 1253
            G EWE LAE LQAGENY S+DG IRLSVQ GSLSGP PGPVRL  +TQLLSCKGQDYFT TIVHCPP++ F+EPLLLDFFLDDP V NGK  LKQVL+RYQILR SHGE+ WQPL R D+++VEDR + YLRA V+HFTLF+CCMKCDP+ G+TWF+HTDKQGVLVHNDTNQQLLLVVLPTKYVAVCDKRHAVQL VGGSLPGGEGI VGGSFE + RTEYV+ PQGEAPSSQ+VLP AQ Q++RLREV+CVERL+ICS   V     STQ TPPS+ SP QMAP+STV SGE +YR+V+FY+DP+VKG DGLVIHQSRL+  PRDEC VRAKGV+LKHVAM LAGLG G+ E+
Sbjct:  375 GDEWELLAEKLQAGENYPSKDGRIRLSVQRGSLSGPEPGPVRLRFSTQLLSCKGQDYFTNTIVHCPPDNHFEEPLLLDFFLDDPAVSNGKATLKQVLERYQILRMSHGENEWQPLERHDMTMVEDRGAIYLRAQVYHFTLFSCCMKCDPTGGMTWFSHTDKQGVLVHNDTNQQLLLVVLPTKYVAVCDKRHAVQLTVGGSLPGGEGINVGGSFEPHVRTEYVWLPQGEAPSSQEVLPGAQEQKLRLREVECVERLIICSTCFVPEKPSSTQATPPSRPSPGQMAPLSTVRSGEDEYRLVEFYDDPMVKGGDGLVIHQSRLDARPRDECLVRAKGVDLKHVAMFLAGLGGGSGEE 728
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BLAST of mRNA_E_fasciculatus_S2_contig970.17706.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGG6_ECTSI)

HSP 1 Score: 71.2 bits (173), Expect = 1.730e-10
Identity = 36/40 (90.00%), Postives = 37/40 (92.50%), Query Frame = -1 
Query: 2257 LRRVALGATHVLVRSALGVTADATCAMLGLGRGGGRTQGR 2376
            LRRVALGATH+LVRSAL VTA A CAMLGLGRGGGRTQGR
Sbjct:  142 LRRVALGATHILVRSALDVTAAAACAMLGLGRGGGRTQGR 181
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig970.17706.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
NB-ARC4.960e-20887.47and TPR repeat-containing protein n=1 Tax=Ectocarp... [more]
G1.610e-18276.27domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized1.730e-1090.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig970contigE_fasciculatus_S2_contig970:2350..5880 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score388.7
Seed ortholog evalue1.9e-105
Seed eggNOG ortholog2880.D8LGG5
Model size2544
KEGG koko:K10407
KEGG Pathwayko05132,map05132
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759,KOG4658@1,KOG4658@2759
Cds size666
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03019,ko04812
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842615.579931-UTR-E_fasciculatus_S2_contig970:2349..28431696842615.579931-UTR-E_fasciculatus_S2_contig970:2349..2843Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig970 2350..2843 +
1696842615.592819-UTR-E_fasciculatus_S2_contig970:3830..39591696842615.592819-UTR-E_fasciculatus_S2_contig970:3830..3959Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig970 3831..3959 +
1696842615.6218138-UTR-E_fasciculatus_S2_contig970:4625..58801696842615.6218138-UTR-E_fasciculatus_S2_contig970:4625..5880Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig970 4626..5880 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842615.6110005-CDS-E_fasciculatus_S2_contig970:3959..46251696842615.6110005-CDS-E_fasciculatus_S2_contig970:3959..4625Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig970 3960..4625 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig970.17706.1prot_E_fasciculatus_S2_contig970.17706.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig970 3960..4625 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig970.17706.1

>prot_E_fasciculatus_S2_contig970.17706.1 ID=prot_E_fasciculatus_S2_contig970.17706.1|Name=mRNA_E_fasciculatus_S2_contig970.17706.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=222bp
MKCDPSCGITWFNHTDKQGVLVHNDTNQQLLLVVLPTKYVAVCDKRHAVQ
LAVGGSLPGGEGIEVGGSFERNKRTEYVYFPQGEAPSSQDVLPWAQRQRV
RLREVDCVERLLICSVSLVRGGALSTQTTPPSQSSPRQMAPVSTVPSGEG
QYRVVKFYEDPIVKGSDGLVIHQSRLNVPPRDECYVRAKGVNLKHVAMVL
AGLGEGNVEDGKAQRREKARR*
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mRNA from alignment at E_fasciculatus_S2_contig970:2350..5880+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig970.17706.1 ID=mRNA_E_fasciculatus_S2_contig970.17706.1|Name=mRNA_E_fasciculatus_S2_contig970.17706.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3531bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig970:2350..5880+ (Ectocarpus fasciculatus EfasUO2)
GTGCGCCATGTTTGTTGGCTCCTCAAAGTAACTAAATACAAGATGCCCTC
GACTGGTCCGTCAGCTTTTCCACCTTGGCGCCGACGGCTGAGTCGTTTTA
GGACAAGCTGTACACATCAGCCGTTGCCGTCAACATAACTCAACGTGCGA
GATCTGTACCTCTCAATCGCGATTCTTCCGGTTTTGAAATAGGGGGCGAG
TGGGAACCACTGGCGGAAACGTTGCAGGCTGGTGAGAACTACCTGTCAAG
GGATGGCGGTATCCGCCTCAGTGTTCAGCACGGCAGCCTGAGCGGCCCTG
GACCGGGCCCCGTTCGCCTCCACCTTGCGACTCAGCTTTTAAGCTGTAAG
GGTCAAGACTACTTTACCACCACCATCGTGCACTGCCCCCCAAATCATCG
CTTCCAAGAGCCGCTGCTGCTTGACTTTTTTCTTGACGACCCTACCGTCC
GCAACGGAAAAGGGGCCCTGAAGCAAGTTCTCAAACGCTACCAGGTATGT
TTTCTCCAGGCGTCACACACTTGGTCCCTGTGTAAGGCTCCAGAGTCCAT
CGCAAGGGAATGTGTTGGCTCCCTACACAAAATGACACCGCTGCACCAGA
ACAAAAAAAAAATGGACCCCCGAAATTAATTTAATTTCCGTCGTCTTTTC
CAAAAGGTTTATATCGATTTACGTGTGCCCCATCGTACCTTCTTCGTCCG
CGTGTGTCTTGCCCTTGTTTTGCGACGCGTCGGCGTTCGGCCCCCACCAT
GTCTACTCCTCGCCTGCGTACACTACTTTCTTTTATGGGTTGCCATTCGT
TACCTCTCCTGCAGGGTAGTAACAATGATGTGTTTCCGCTGGAATATCCA
TCGGTACGGCTCCCGCCATGTCTACTCGTCGCCTGCGTAGACTACTTTCT
TCTCCTGCAGGGTAGGATAACCTTTGGCTAGAATATCGATATCCATCGAT
GTCCGTCGAGCCAACGTAGCTCATTCCTTTTCATCGTATCCCTTGCCTTT
CGTTTCGGGTTTGTGCAGTTAATTTGTAGAAACCATCGCTCCGCAGACTT
ATGTCGGCACGTTCAACAACGAATTTCCCCCAACAACTTGCTTTCGACAC
CGACCGGCCATTACGCCATCGGGACTGACCTCGGTCTGTGCCTGCCGTTG
CACGGCGGCACTCACTCGCCCTAGTTTGTATTGGCGACTTCCTAGTCCTT
CACCCGAAACCATCCGCTTCGCGGTCACCTCGGGGGTTCCTTCTACATAT
ACTCTCGCTCTCCTAAAAATTTCTCTTTTCATCCTACACAACTATCACAA
CTTCCTCCCCGGAACAAAGAAGGGGGGGGGGGGGGCTTAAGAGGAGGCCG
TGGCTACCCGGGGGCTGTCCTATGAAAATGGACCCAAAATTAGGTTGATT
TCCTTCGTCTTTTCCAAAATGTTTATCAACGAAGTACGTGCTTGTTCGTC
GCGTGGCATGCATCGGCGTTTTCTCTCACAGATTCTGCGCAAGAGTCACG
GTGAACACGGATGGCAGCCATTGAGGCGGGAAGACATTTCCTTGGTGGAG
GACCGCGATTCGACATATCTGAGGGCGCACGTTCACCACTTTACCTTGTT
CGCCTGCTGCATGAAATGCGACCCTTCTTGCGGGATCACGTGGTTCAACC
ATACCGACAAGCAGGGTGTGCTAGTGCACAATGACACCAACCAACAATTA
TTGCTAGTCGTGCTGCCCACGAAGTACGTGGCTGTTTGTGACAAGCGGCA
CGCCGTCCAACTTGCTGTAGGTGGGTCACTACCGGGTGGTGAAGGTATCG
AGGTCGGCGGGAGCTTCGAACGCAATAAGCGAACTGAGTATGTGTATTTT
CCCCAGGGGGAAGCCCCTTCGAGCCAAGACGTCTTGCCATGGGCACAAAG
ACAGAGGGTGAGACTGCGAGAGGTTGATTGCGTAGAGCGTCTACTCATCT
GCTCTGTTAGTCTAGTACGCGGCGGTGCTTTGTCGACCCAAACAACACCC
CCGTCACAATCTAGCCCTCGACAGATGGCCCCGGTATCGACGGTCCCTAG
CGGCGAAGGCCAGTATCGTGTGGTGAAGTTTTATGAAGACCCCATAGTCA
AGGGGAGCGACGGCCTTGTCATCCATCAATCCCGTTTGAACGTTCCGCCG
CGGGATGAGTGCTACGTTCGTGCAAAAGGGGTGAACCTCAAACATGTTGC
CATGGTTCTTGCAGGCTTGGGTGAAGGTAACGTAGAGGATGGGAAGGCGC
AGAGGAGGGAAAAGGCGCGCCGGTGAAAGGCACAGAGGAGGGAAAAGGCG
TGGAAGAGCAAAAACAATCCAGTGCAAATTGGTACTCCAAGCTGATAGGG
TAGGGAGCACGGGTGGCCATGTTTTGCGCGTCGGACCTCGACATCGTTGT
CCAGTTGTTTCGTTGTGGAGACTTTGTGTTTTGTCTTTTTCGAAAGGTTC
GAAACGGAAGGTCGGTACCATTCCCAGGGGGAGGAACACCAGTGTGCACG
GTACGGTGCTTGTGTGCCATGTCTCAACATTAGGTGGCGGTTTTAGTTTC
GTTGGGTACACAAATTTGTTCGACGAACTGGCGGAAGGGTTGGAGATGGG
GGGCTAGGTTGTGCCCTAGATGTGAAATCCCTTTGCAAGGATGCGGAAAT
CCATAGAGGTTTGCTGAGTATCGGGCAAAGCATTTTAACAGTCAAATCCA
ACGTTTTTCGTTGGACGTACCTGCTGTCGTTCTGTGTTGTTGACGCATCT
CTTTACCTGTAGTGCTTCGGACTCTTCTGTTCTGCTGCAATTGTTTTATC
ATAAAAATATATCGTACATGTGTCCCTGCCAGACCGGAGAATATCCTCTG
GTCTCCGTGACGGCGCACGAGGAAAGGACCCGTTGTTTCACCAGATAAAT
GGCGGCGATACCGCATTTGGACGGTTTATCGGGAGAACCCTTCCATGCGG
CGGTTCGGGGTAGCCTCTTTGGCGGGTAAGATAGGCAAGGCCGGGGAAGG
AGTCCCGTTTAGGCGCAGAAAAAAACACTAAACGGCAAACGCAGTTGGAC
ACACCCAAAATGTCTCGTCATTGGCAAATCGTACCAGGGGTTTGTCTAGA
AGACTGCGTACAGCACCTGGTTCAGTGAATCCTCGCGCAAGAAAGCAGCA
CCTCTTCGATCCTCTGCTCTGTGCTACACATAAACGGCGCATCACCTACC
CCAGCAAAAAAAGGGTGCTTTGCATGTACATTCAACGCTGTCATCGGCCT
TGAGTTCGTCCGCCGCCTCTGCCGAGACCCAGCATCGCGCAGGTAGCGTC
GGCCGTTACACCCAACGCGGATCTCACGAGCACGTGCGTCGCCCCCAGCG
CGACTCTTCGCAAGCTGCGCGAGACAAGGTCCATGGAAGGCAAACGTTTT
GAAACGAAGTGGGAGTCGCACCGGAGAAGAACTTATAATAGTCGCATTCG
CGCAGCAGTTTTTGGGGGGACATGGTACTTCGGAGGCGCTGTGTTTGCAG
AGCCAAACTGCGTCAAGGGCATACGAAACGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig970:2350..5880+

>mRNA_E_fasciculatus_S2_contig970.17706.1 ID=mRNA_E_fasciculatus_S2_contig970.17706.1|Name=mRNA_E_fasciculatus_S2_contig970.17706.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=666bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig970:2350..5880+ (Ectocarpus fasciculatus EfasUO2)
ATGAAATGCGACCCTTCTTGCGGGATCACGTGGTTCAACCATACCGACAA
GCAGGGTGTGCTAGTGCACAATGACACCAACCAACAATTATTGCTAGTCG
TGCTGCCCACGAAGTACGTGGCTGTTTGTGACAAGCGGCACGCCGTCCAA
CTTGCTGTAGGTGGGTCACTACCGGGTGGTGAAGGTATCGAGGTCGGCGG
GAGCTTCGAACGCAATAAGCGAACTGAGTATGTGTATTTTCCCCAGGGGG
AAGCCCCTTCGAGCCAAGACGTCTTGCCATGGGCACAAAGACAGAGGGTG
AGACTGCGAGAGGTTGATTGCGTAGAGCGTCTACTCATCTGCTCTGTTAG
TCTAGTACGCGGCGGTGCTTTGTCGACCCAAACAACACCCCCGTCACAAT
CTAGCCCTCGACAGATGGCCCCGGTATCGACGGTCCCTAGCGGCGAAGGC
CAGTATCGTGTGGTGAAGTTTTATGAAGACCCCATAGTCAAGGGGAGCGA
CGGCCTTGTCATCCATCAATCCCGTTTGAACGTTCCGCCGCGGGATGAGT
GCTACGTTCGTGCAAAAGGGGTGAACCTCAAACATGTTGCCATGGTTCTT
GCAGGCTTGGGTGAAGGTAACGTAGAGGATGGGAAGGCGCAGAGGAGGGA
AAAGGCGCGCCGGTGA
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